Wall clock time and date at job start Mon Mar 30 2020 02:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46859 * 2 1 4 4 H 1.09007 * 115.56663 * 29.31204 * 3 2 1 5 5 C 1.53076 * 117.51455 * 243.61018 * 3 2 1 6 6 C 1.53004 * 117.50051 * 174.99993 * 3 2 1 7 7 H 1.08999 * 117.49797 * 215.00132 * 6 3 2 8 8 N 1.46895 * 117.49546 * 359.97438 * 6 3 2 9 9 C 1.46904 * 111.00166 * 204.90984 * 8 6 3 10 10 H 1.08991 * 109.46824 * 325.00377 * 9 8 6 11 11 C 1.53005 * 109.46731 * 85.00166 * 9 8 6 12 12 C 1.50696 * 109.47391 * 204.99942 * 9 8 6 13 13 H 1.08003 * 120.00258 * 356.67981 * 12 9 8 14 14 C 1.37877 * 120.00052 * 176.67468 * 12 9 8 15 15 N 1.31508 * 120.00011 * 352.67645 * 14 12 9 16 16 Si 1.86796 * 119.99934 * 172.67097 * 14 12 9 17 17 H 1.48498 * 109.47529 * 265.07178 * 16 14 12 18 18 H 1.48507 * 109.46905 * 145.07170 * 16 14 12 19 19 H 1.48497 * 109.47479 * 25.07643 * 16 14 12 20 20 H 1.08995 * 109.46862 * 59.99929 * 1 2 3 21 21 H 1.09002 * 109.46494 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46848 * 299.99792 * 1 2 3 23 23 H 1.08992 * 109.47324 * 240.00108 * 2 1 3 24 24 H 1.09002 * 109.47233 * 119.99946 * 2 1 3 25 25 H 1.08994 * 117.49390 * 145.03865 * 5 3 2 26 26 H 1.09000 * 117.53188 * 359.97438 * 5 3 2 27 27 H 1.00906 * 111.00273 * 80.95967 * 8 6 3 28 28 H 1.08998 * 109.47195 * 57.75229 * 11 9 8 29 29 H 1.09000 * 109.46810 * 177.74945 * 11 9 8 30 30 H 1.08999 * 109.47030 * 297.75092 * 11 9 8 31 31 H 0.97001 * 120.00318 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1718 0.4814 5 6 2.8446 1.9081 -1.2161 6 6 3.5502 1.6580 0.1183 7 1 3.8920 2.5288 0.6778 8 7 4.3994 0.4641 0.2237 9 6 5.6660 0.7769 0.8989 10 1 5.9821 1.7846 0.6295 11 6 5.4709 0.6914 2.4140 12 6 6.7204 -0.2114 0.4717 13 1 6.4616 -1.0255 -0.1891 14 6 8.0158 -0.0763 0.9244 15 7 8.3650 0.9906 1.6094 16 14 9.2745 -1.4087 0.5649 17 1 9.3450 -2.3463 1.7142 18 1 10.6061 -0.7870 0.3509 19 1 8.8735 -2.1521 -0.6565 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8934 -0.5138 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 2.7220 2.9434 -1.5342 26 1 3.0112 1.1869 -2.0162 27 1 4.5648 0.0566 -0.6844 28 1 5.1164 -0.3046 2.6791 29 1 6.4201 0.8843 2.9140 30 1 4.7373 1.4338 2.7283 31 1 9.2762 1.0856 1.9282 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227033212.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:30 Heat of formation + Delta-G solvation = 5.858957 kcal Electronic energy + Delta-G solvation = -11156.042798 eV Core-core repulsion = 9244.485085 eV Total energy + Delta-G solvation = -1911.557713 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -37.88074 -34.60233 -32.16115 -30.95258 -27.46638 -25.12109 -23.49462 -21.26631 -20.25378 -19.01205 -16.46750 -15.28471 -14.52625 -14.30306 -13.87925 -13.49597 -12.70065 -12.41627 -11.83632 -11.75474 -11.44623 -11.05115 -10.88790 -10.79563 -10.57832 -10.51885 -10.27800 -10.08061 -9.72847 -9.28127 -8.83755 -8.41698 -7.11636 -6.05237 -4.08498 3.30114 3.36945 3.40035 4.35315 4.41360 5.06320 5.18005 5.29042 5.40483 5.53317 5.61136 5.82374 5.92543 6.11242 6.17230 6.27988 6.42599 6.46754 6.58687 6.84444 6.87026 7.14625 7.21148 7.48270 7.78973 7.87721 8.19047 8.38617 8.67820 9.02588 9.56747 11.03627 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.063681 B = 0.009014 C = 0.008764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.586842 B = 3105.555262 C = 3193.940445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 C -0.154 4.154 4 H 0.093 0.907 5 C -0.214 4.214 6 C 0.045 3.955 7 H 0.099 0.901 8 N -0.654 5.654 9 C 0.211 3.789 10 H 0.008 0.992 11 C -0.119 4.119 12 C -0.521 4.521 13 H 0.060 0.940 14 C 0.063 3.937 15 N -0.889 5.889 16 Si 0.895 3.105 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.274 1.274 20 H 0.047 0.953 21 H 0.048 0.952 22 H 0.049 0.951 23 H 0.057 0.943 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.334 0.666 28 H 0.033 0.967 29 H 0.067 0.933 30 H 0.008 0.992 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.737 0.221 -2.822 10.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.118 4.118 3 C -0.173 4.173 4 H 0.111 0.889 5 C -0.253 4.253 6 C -0.068 4.068 7 H 0.117 0.883 8 N -0.283 5.283 9 C 0.104 3.896 10 H 0.026 0.974 11 C -0.178 4.178 12 C -0.560 4.560 13 H 0.078 0.922 14 C -0.139 4.139 15 N -0.528 5.528 16 Si 0.723 3.277 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.199 1.199 20 H 0.067 0.933 21 H 0.067 0.933 22 H 0.068 0.932 23 H 0.076 0.924 24 H 0.091 0.909 25 H 0.101 0.899 26 H 0.107 0.893 27 H 0.153 0.847 28 H 0.052 0.948 29 H 0.086 0.914 30 H 0.027 0.973 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.840 0.058 -2.146 10.071 hybrid contribution 1.170 -0.089 -0.837 1.441 sum -8.670 -0.032 -2.983 9.168 Atomic orbital electron populations 1.21792 0.96898 1.00816 1.01078 1.20862 0.93802 0.94520 1.02580 1.22586 0.95258 0.97643 1.01849 0.88905 1.23530 1.07902 1.01250 0.92635 1.22574 0.92014 0.94964 0.97202 0.88348 1.60405 1.19173 1.24088 1.24664 1.19151 0.83684 0.95651 0.91145 0.97416 1.21649 0.99617 0.97920 0.98604 1.21252 0.93193 1.11942 1.29578 0.92198 1.24914 0.98225 0.95482 0.95245 1.69957 1.18744 1.26459 1.37609 0.86541 0.80593 0.81969 0.78642 1.20624 1.21320 1.19881 0.93340 0.93289 0.93197 0.92402 0.90905 0.89874 0.89251 0.84748 0.94820 0.91427 0.97286 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.87 37.16 0.37 -1.44 16 2 C -0.08 -1.19 5.67 -26.73 -0.15 -1.35 16 3 C -0.15 -2.41 5.74 -90.58 -0.52 -2.93 16 4 H 0.09 1.34 8.08 -51.93 -0.42 0.92 16 5 C -0.21 -3.37 9.88 -26.69 -0.26 -3.63 16 6 C 0.04 0.84 6.02 -67.71 -0.41 0.43 16 7 H 0.10 1.93 7.77 -51.93 -0.40 1.52 16 8 N -0.65 -14.15 5.95 -100.95 -0.60 -14.75 16 9 C 0.21 5.40 2.39 -68.86 -0.16 5.24 16 10 H 0.01 0.23 7.73 -51.93 -0.40 -0.17 16 11 C -0.12 -2.99 9.25 37.16 0.34 -2.64 16 12 C -0.52 -14.42 8.53 -34.44 -0.29 -14.71 16 13 H 0.06 1.63 7.66 -52.48 -0.40 1.23 16 14 C 0.06 1.77 5.21 -17.82 -0.09 1.68 16 15 N -0.89 -25.72 11.91 55.43 0.66 -25.06 16 16 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 21 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.88 7.88 -51.93 -0.41 0.47 16 24 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.09 1.38 7.98 -51.93 -0.41 0.97 16 27 H 0.33 7.13 8.03 -39.29 -0.32 6.81 16 28 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 1.82 6.58 -51.93 -0.34 1.48 16 30 H 0.01 0.19 8.10 -51.93 -0.42 -0.23 16 31 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 258.25 15.07 3.89 3.89 Total: -1.00 -27.99 258.25 -7.45 -35.45 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -5.20 Total: 3.46 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: -1.18 Total: -19.36 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.06 Total: -39.82 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -27.99 -7.45 -35.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227033212.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.307 kcal (2) G-P(sol) polarization free energy of solvation -27.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds