Wall clock time and date at job start Mon Mar 30 2020 02:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46859 * 2 1 4 4 H 1.09007 * 115.56663 * 29.31204 * 3 2 1 5 5 C 1.53076 * 117.51455 * 243.61018 * 3 2 1 6 6 C 1.53004 * 117.50051 * 174.99993 * 3 2 1 7 7 H 1.08999 * 117.49797 * 215.00132 * 6 3 2 8 8 N 1.46895 * 117.49546 * 359.97438 * 6 3 2 9 9 C 1.46904 * 111.00166 * 204.90984 * 8 6 3 10 10 H 1.08991 * 109.46824 * 325.00377 * 9 8 6 11 11 C 1.53005 * 109.46731 * 85.00166 * 9 8 6 12 12 C 1.50696 * 109.47391 * 204.99942 * 9 8 6 13 13 H 1.08003 * 120.00258 * 356.67981 * 12 9 8 14 14 C 1.37877 * 120.00052 * 176.67468 * 12 9 8 15 15 N 1.31508 * 120.00011 * 352.67645 * 14 12 9 16 16 Si 1.86796 * 119.99934 * 172.67097 * 14 12 9 17 17 H 1.48498 * 109.47529 * 265.07178 * 16 14 12 18 18 H 1.48507 * 109.46905 * 145.07170 * 16 14 12 19 19 H 1.48497 * 109.47479 * 25.07643 * 16 14 12 20 20 H 1.08995 * 109.46862 * 59.99929 * 1 2 3 21 21 H 1.09002 * 109.46494 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46848 * 299.99792 * 1 2 3 23 23 H 1.08992 * 109.47324 * 240.00108 * 2 1 3 24 24 H 1.09002 * 109.47233 * 119.99946 * 2 1 3 25 25 H 1.08994 * 117.49390 * 145.03865 * 5 3 2 26 26 H 1.09000 * 117.53188 * 359.97438 * 5 3 2 27 27 H 1.00906 * 111.00273 * 80.95967 * 8 6 3 28 28 H 1.08998 * 109.47195 * 57.75229 * 11 9 8 29 29 H 1.09000 * 109.46810 * 177.74945 * 11 9 8 30 30 H 1.08999 * 109.47030 * 297.75092 * 11 9 8 31 31 H 0.97001 * 120.00318 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1718 0.4814 5 6 2.8446 1.9081 -1.2161 6 6 3.5502 1.6580 0.1183 7 1 3.8920 2.5288 0.6778 8 7 4.3994 0.4641 0.2237 9 6 5.6660 0.7769 0.8989 10 1 5.9821 1.7846 0.6295 11 6 5.4709 0.6914 2.4140 12 6 6.7204 -0.2114 0.4717 13 1 6.4616 -1.0255 -0.1891 14 6 8.0158 -0.0763 0.9244 15 7 8.3650 0.9906 1.6094 16 14 9.2745 -1.4087 0.5649 17 1 9.3450 -2.3463 1.7142 18 1 10.6061 -0.7870 0.3509 19 1 8.8735 -2.1521 -0.6565 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8934 -0.5138 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 2.7220 2.9434 -1.5342 26 1 3.0112 1.1869 -2.0162 27 1 4.5648 0.0566 -0.6844 28 1 5.1164 -0.3046 2.6791 29 1 6.4201 0.8843 2.9140 30 1 4.7373 1.4338 2.7283 31 1 9.2762 1.0856 1.9282 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227033212.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:30 Heat of formation + Delta-G solvation = -10.959178 kcal Electronic energy + Delta-G solvation = -11156.772087 eV Core-core repulsion = 9244.485085 eV Total energy + Delta-G solvation = -1912.287002 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.33434 -36.46023 -33.90240 -32.41902 -29.32345 -27.25481 -24.60772 -22.81442 -22.00863 -20.48285 -18.48769 -17.04316 -16.19239 -15.86221 -15.34857 -15.02155 -14.41419 -13.99360 -13.54547 -13.03488 -12.94031 -12.82623 -12.61689 -12.50592 -12.32855 -12.15989 -11.89218 -11.72679 -11.31306 -10.96628 -10.64731 -10.47164 -8.82295 -8.17846 -6.28867 1.41104 1.42857 1.53049 2.40640 2.98990 3.13572 3.54906 3.90986 4.08864 4.34112 4.45297 4.60666 4.74233 4.79952 4.88555 4.91327 5.03274 5.09801 5.18236 5.28782 5.30574 5.41950 5.46298 5.64960 5.68399 5.82174 6.14696 6.46582 6.78478 6.99147 7.41212 8.90926 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.063681 B = 0.009014 C = 0.008764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.586842 B = 3105.555262 C = 3193.940445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.081 4.081 3 C -0.134 4.134 4 H 0.111 0.889 5 C -0.194 4.194 6 C 0.005 3.995 7 H 0.084 0.916 8 N -0.649 5.649 9 C 0.217 3.783 10 H -0.027 1.027 11 C -0.107 4.107 12 C -0.540 4.540 13 H 0.059 0.941 14 C 0.015 3.985 15 N -0.920 5.920 16 Si 0.962 3.038 17 H -0.275 1.275 18 H -0.283 1.283 19 H -0.266 1.266 20 H 0.059 0.941 21 H 0.058 0.942 22 H 0.056 0.944 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.102 0.898 26 H 0.093 0.907 27 H 0.332 0.668 28 H 0.032 0.968 29 H 0.043 0.957 30 H 0.023 0.977 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.845 -0.345 -3.580 11.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.118 4.118 3 C -0.153 4.153 4 H 0.129 0.871 5 C -0.233 4.233 6 C -0.107 4.107 7 H 0.102 0.898 8 N -0.278 5.278 9 C 0.108 3.892 10 H -0.010 1.010 11 C -0.165 4.165 12 C -0.579 4.579 13 H 0.078 0.922 14 C -0.185 4.185 15 N -0.559 5.559 16 Si 0.787 3.213 17 H -0.201 1.201 18 H -0.209 1.209 19 H -0.190 1.190 20 H 0.078 0.922 21 H 0.077 0.923 22 H 0.075 0.925 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.120 0.880 26 H 0.112 0.888 27 H 0.151 0.849 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.042 0.958 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.975 -0.504 -2.911 11.366 hybrid contribution 1.467 0.138 -0.615 1.597 sum -9.508 -0.366 -3.526 10.147 Atomic orbital electron populations 1.21731 0.94377 1.01861 1.01951 1.20861 0.95990 0.93578 1.01399 1.22700 0.92901 0.98662 1.01067 0.87087 1.23573 1.05561 1.02549 0.91617 1.22588 0.93700 0.93872 1.00511 0.89816 1.60348 1.17289 1.25688 1.24507 1.18927 0.85182 0.93309 0.91745 1.00982 1.21468 0.98670 0.98228 0.98165 1.21582 0.94160 1.12312 1.29803 0.92235 1.25739 1.00237 0.97494 0.95021 1.70077 1.19288 1.28097 1.38432 0.85491 0.77961 0.79145 0.78722 1.20111 1.20879 1.19048 0.92218 0.92266 0.92537 0.92821 0.92930 0.87968 0.88820 0.84933 0.94835 0.93803 0.95804 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 9.87 71.98 0.71 -2.31 16 2 C -0.08 -2.25 5.67 30.60 0.17 -2.08 16 3 C -0.13 -3.92 5.74 -10.77 -0.06 -3.98 16 4 H 0.11 2.87 8.08 -2.38 -0.02 2.85 16 5 C -0.19 -5.71 9.88 30.62 0.30 -5.41 16 6 C 0.00 0.17 6.02 44.92 0.27 0.44 16 7 H 0.08 3.33 7.77 -2.39 -0.02 3.31 16 8 N -0.65 -28.27 5.95 -473.31 -2.82 -31.08 16 9 C 0.22 11.35 2.39 44.17 0.11 11.45 16 10 H -0.03 -1.60 7.73 -2.39 -0.02 -1.62 16 11 C -0.11 -5.43 9.25 71.98 0.67 -4.77 16 12 C -0.54 -30.21 8.53 25.60 0.22 -29.99 16 13 H 0.06 3.26 7.66 -2.91 -0.02 3.23 16 14 C 0.01 0.81 5.21 84.66 0.44 1.25 16 15 N -0.92 -54.03 11.91 21.45 0.26 -53.78 16 16 Si 0.96 43.86 29.54 68.60 2.03 45.89 16 17 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 18 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 19 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 20 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 21 H 0.06 1.14 8.14 -2.39 -0.02 1.13 16 22 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.05 1.53 7.88 -2.39 -0.02 1.51 16 24 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 26 H 0.09 2.70 7.98 -2.39 -0.02 2.68 16 27 H 0.33 14.24 8.03 -89.69 -0.72 13.52 16 28 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.04 2.41 6.58 -2.39 -0.02 2.39 16 30 H 0.02 1.08 8.10 -2.39 -0.02 1.06 16 31 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -59.48 258.25 2.65 -56.83 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 0.36 Total: 17.53 kcal Atomic # 6 Polarization: -38.21 SS G_CDS: 2.83 Total: -35.39 kcal Atomic # 7 Polarization: -82.30 SS G_CDS: -2.56 Total: -84.86 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -59.48 2.65 -56.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227033212.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.870 kcal (2) G-P(sol) polarization free energy of solvation -59.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds