Wall clock time and date at job start Mon Mar 30 2020 01:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46899 * 112.85060 * 2 1 4 4 C 1.46893 * 111.00194 * 311.20009 * 3 2 1 5 5 C 1.52999 * 109.47347 * 179.97438 * 4 3 2 6 6 C 1.50705 * 109.47361 * 179.97438 * 5 4 3 7 7 H 1.07997 * 119.99937 * 359.97438 * 6 5 4 8 8 C 1.37871 * 119.99847 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99950 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 120.00191 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.46971 * 90.00400 * 10 8 6 12 12 H 1.48501 * 109.46904 * 210.00011 * 10 8 6 13 13 H 1.48498 * 109.47198 * 330.00020 * 10 8 6 14 14 C 1.53782 * 113.61446 * 131.20170 * 2 1 3 15 15 C 1.53781 * 87.08260 * 89.11378 * 14 2 1 16 16 C 1.53786 * 87.17350 * 25.39213 * 15 14 2 17 17 H 1.08998 * 109.47320 * 288.80453 * 1 2 3 18 18 H 1.08999 * 109.47324 * 48.80044 * 1 2 3 19 19 H 1.09006 * 109.47299 * 168.80067 * 1 2 3 20 20 H 1.00896 * 110.99524 * 75.15208 * 3 2 1 21 21 H 1.09006 * 109.47332 * 299.99826 * 4 3 2 22 22 H 1.09002 * 109.47593 * 59.99657 * 4 3 2 23 23 H 1.08997 * 109.47121 * 300.00115 * 5 4 3 24 24 H 1.09003 * 109.46817 * 59.99996 * 5 4 3 25 25 H 0.96999 * 120.00184 * 180.02562 * 9 8 6 26 26 H 1.09001 * 113.61250 * 334.56196 * 14 2 1 27 27 H 1.08997 * 113.61225 * 203.66037 * 14 2 1 28 28 H 1.09002 * 113.61445 * 139.98212 * 15 14 2 29 29 H 1.09002 * 113.61408 * 270.79943 * 15 14 2 30 30 H 1.08993 * 113.61491 * 89.15923 * 16 15 14 31 31 H 1.09000 * 113.61138 * 220.06261 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.1004 1.3537 0.0000 4 6 1.4725 2.1896 -1.0318 5 6 2.0907 3.5888 -1.0007 6 6 1.4469 4.4462 -2.0597 7 1 0.6743 4.0343 -2.6920 8 6 1.8449 5.7562 -2.2220 9 7 1.2827 6.5046 -3.1458 10 14 3.1817 6.4686 -1.1288 11 1 4.5075 6.2481 -1.7605 12 1 2.9533 7.9253 -0.9530 13 1 3.1469 5.7986 0.1961 14 6 2.1460 -0.9282 1.0602 15 6 2.0929 -2.0426 0.0018 16 6 2.1448 -0.9317 -1.0604 17 1 -0.3634 0.3312 0.9728 18 1 -0.3634 0.6769 -0.7732 19 1 -0.3634 -1.0081 -0.1996 20 1 2.0184 1.7806 0.9105 21 1 1.6362 1.7414 -2.0119 22 1 0.4020 2.2615 -0.8395 23 1 1.9266 4.0368 -0.0207 24 1 3.1613 3.5173 -1.1929 25 1 1.5630 7.4262 -3.2603 26 1 1.4945 -1.1069 1.9156 27 1 3.1590 -0.6487 1.3494 28 1 2.9716 -2.6875 0.0024 29 1 1.1573 -2.6019 0.0033 30 1 3.1574 -0.6533 -1.3518 31 1 1.4923 -1.1134 -1.9144 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228848377.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:02 Heat of formation + Delta-G solvation = -14.386025 kcal Electronic energy + Delta-G solvation = -11162.467706 eV Core-core repulsion = 9250.032104 eV Total energy + Delta-G solvation = -1912.435602 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.47377 -36.37697 -34.52508 -31.51751 -29.26217 -26.79307 -26.07219 -23.55075 -22.09382 -19.34009 -18.84838 -17.12582 -16.29103 -16.19321 -15.75211 -15.21795 -14.64688 -14.29865 -13.84655 -13.52482 -13.18836 -12.97649 -12.83339 -12.24063 -12.14778 -11.91534 -11.74423 -11.46411 -11.42976 -11.15476 -10.92376 -10.78286 -9.29760 -8.31439 -6.36229 1.36274 1.37483 1.50461 2.35633 3.03982 3.35820 3.64230 3.81592 3.99677 4.03854 4.41587 4.47295 4.61221 4.66271 4.78471 4.92422 4.95386 4.99208 5.07493 5.12147 5.14691 5.31605 5.45444 5.48902 5.60435 5.63310 6.20957 6.29019 6.58222 6.73105 7.28798 8.85366 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.073885 B = 0.008566 C = 0.008175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.874858 B = 3268.097359 C = 3424.351428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.066 3.934 3 N -0.678 5.678 4 C 0.087 3.913 5 C -0.004 4.004 6 C -0.535 4.535 7 H 0.030 0.970 8 C 0.005 3.995 9 N -0.951 5.951 10 Si 0.956 3.044 11 H -0.268 1.268 12 H -0.282 1.282 13 H -0.247 1.247 14 C -0.120 4.120 15 C -0.126 4.126 16 C -0.131 4.131 17 H 0.061 0.939 18 H 0.044 0.956 19 H 0.078 0.922 20 H 0.339 0.661 21 H 0.048 0.952 22 H 0.021 0.979 23 H 0.019 0.981 24 H 0.019 0.981 25 H 0.267 0.733 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.996 -14.943 9.671 17.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.025 4.025 3 N -0.308 5.308 4 C -0.042 4.042 5 C -0.042 4.042 6 C -0.574 4.574 7 H 0.048 0.952 8 C -0.192 4.192 9 N -0.591 5.591 10 Si 0.779 3.221 11 H -0.193 1.193 12 H -0.208 1.208 13 H -0.171 1.171 14 C -0.157 4.157 15 C -0.164 4.164 16 C -0.169 4.169 17 H 0.080 0.920 18 H 0.063 0.937 19 H 0.097 0.903 20 H 0.157 0.843 21 H 0.067 0.933 22 H 0.040 0.960 23 H 0.038 0.962 24 H 0.037 0.963 25 H 0.076 0.924 26 H 0.096 0.904 27 H 0.103 0.897 28 H 0.098 0.902 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.529 -14.951 9.201 17.737 hybrid contribution -0.641 1.069 0.130 1.254 sum 1.888 -13.882 9.331 16.832 Atomic orbital electron populations 1.22144 0.95220 1.02822 1.01852 1.22618 0.92649 0.88069 0.99190 1.60894 1.58480 1.02814 1.08596 1.21599 0.95218 0.92749 0.94622 1.19444 0.96246 0.92980 0.95523 1.21422 1.21179 0.96856 1.17937 0.95161 1.26020 0.99099 0.97368 0.96711 1.70067 1.44833 1.08785 1.35456 0.85575 0.78933 0.77270 0.80320 1.19301 1.20754 1.17051 1.23001 1.01427 0.94964 0.96339 1.22696 1.02983 0.95592 0.95114 1.23054 1.00885 0.96237 0.96772 0.91979 0.93678 0.90326 0.84299 0.93344 0.96041 0.96247 0.96278 0.92393 0.90427 0.89699 0.90191 0.89063 0.90757 0.92384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.14 8.78 71.98 0.63 -3.51 16 2 C 0.07 1.78 1.20 4.11 0.00 1.79 16 3 N -0.68 -22.77 6.39 -467.29 -2.99 -25.76 16 4 C 0.09 3.63 4.97 86.30 0.43 4.06 16 5 C 0.00 -0.20 4.30 29.85 0.13 -0.07 16 6 C -0.54 -32.03 9.66 25.60 0.25 -31.78 16 7 H 0.03 1.98 7.99 -2.91 -0.02 1.96 16 8 C 0.00 0.29 5.47 84.65 0.46 0.75 16 9 N -0.95 -60.86 13.96 21.45 0.30 -60.56 16 10 Si 0.96 45.53 27.47 68.60 1.88 47.41 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 13 H -0.25 -10.95 6.54 99.48 0.65 -10.30 16 14 C -0.12 -2.51 7.46 31.12 0.23 -2.28 16 15 C -0.13 -2.39 7.72 31.12 0.24 -2.15 16 16 C -0.13 -3.38 7.36 31.18 0.23 -3.15 16 17 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 18 H 0.04 1.37 6.02 -2.39 -0.01 1.35 16 19 H 0.08 1.66 7.34 -2.38 -0.02 1.65 16 20 H 0.34 10.65 8.80 -89.70 -0.79 9.86 16 21 H 0.05 2.13 8.10 -2.38 -0.02 2.11 16 22 H 0.02 0.91 6.24 -2.39 -0.01 0.89 16 23 H 0.02 0.92 7.20 -2.39 -0.02 0.90 16 24 H 0.02 0.93 7.57 -2.39 -0.02 0.91 16 25 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 26 H 0.08 1.40 8.10 -2.39 -0.02 1.38 16 27 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.09 1.48 7.66 -2.39 -0.02 1.46 16 30 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.06 1.50 8.10 -2.39 -0.02 1.48 16 Total: -1.00 -65.82 249.49 2.05 -63.77 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: 0.25 Total: 11.49 kcal Atomic # 6 Polarization: -38.95 SS G_CDS: 2.61 Total: -36.34 kcal Atomic # 7 Polarization: -83.64 SS G_CDS: -2.69 Total: -86.32 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.88 Total: 47.41 kcal Total: -65.82 2.05 -63.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228848377.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.380 kcal (2) G-P(sol) polarization free energy of solvation -65.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds