Wall clock time and date at job start Mon Mar 30 2020 02:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 110.43521 * 2 1 4 4 C 1.54266 * 110.60017 * 237.37798 * 2 1 3 5 5 C 1.53871 * 106.60107 * 217.65810 * 4 2 1 6 6 C 1.54262 * 106.59727 * 0.02562 * 5 4 2 7 7 H 1.08998 * 110.60092 * 264.87259 * 6 5 4 8 8 C 1.53005 * 110.49048 * 142.28773 * 6 5 4 9 9 N 1.46505 * 109.46904 * 70.22367 * 8 6 5 10 10 C 1.36931 * 119.99788 * 180.02562 * 9 8 6 11 11 H 1.08002 * 120.00438 * 0.02562 * 10 9 8 12 12 C 1.38817 * 119.99680 * 179.72358 * 10 9 8 13 13 N 1.31617 * 119.99873 * 180.27450 * 12 10 9 14 14 Si 1.86800 * 120.00209 * 0.27770 * 12 10 9 15 15 H 1.48498 * 109.47118 * 89.99559 * 14 12 10 16 16 H 1.48499 * 109.47134 * 210.00079 * 14 12 10 17 17 H 1.48507 * 109.46904 * 329.99901 * 14 12 10 18 18 C 1.54889 * 104.19845 * 23.61166 * 6 5 4 19 19 H 1.08994 * 109.46960 * 297.46202 * 1 2 3 20 20 H 1.09004 * 109.46646 * 57.46113 * 1 2 3 21 21 H 1.09005 * 109.47128 * 177.45479 * 1 2 3 22 22 H 1.09005 * 110.03560 * 336.94281 * 4 2 1 23 23 H 1.08998 * 110.03397 * 98.32401 * 4 2 1 24 24 H 1.08997 * 110.03315 * 240.72052 * 5 4 2 25 25 H 1.09003 * 110.03459 * 119.28631 * 5 4 2 26 26 H 1.09003 * 109.46946 * 310.23126 * 8 6 5 27 27 H 1.08993 * 109.47679 * 190.22669 * 8 6 5 28 28 H 0.97000 * 119.99792 * 0.02562 * 9 8 6 29 29 H 0.97000 * 120.00553 * 180.02562 * 13 12 10 30 30 H 1.08999 * 110.75901 * 80.37087 * 18 6 5 31 31 H 1.08996 * 110.75701 * 203.74712 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0213 0.0000 4 6 2.0728 -0.7785 -1.2162 5 6 3.3202 -1.5377 -0.7312 6 6 3.4916 -1.1946 0.7630 7 1 4.1894 -0.3668 0.8888 8 6 3.9714 -2.4207 1.5424 9 7 5.3581 -2.7200 1.1766 10 6 6.0035 -3.7824 1.7507 11 1 5.4902 -4.4001 2.4729 12 6 7.3156 -4.0695 1.3998 13 7 7.9342 -5.0939 1.9476 14 14 8.2032 -3.0017 0.1502 15 1 8.8955 -1.8907 0.8514 16 1 9.2004 -3.8224 -0.5827 17 1 7.2190 -2.4431 -0.8115 18 6 2.0716 -0.7814 1.2232 19 1 -0.3633 0.4739 0.9118 20 1 -0.3633 0.5528 -0.8664 21 1 -0.3633 -1.0267 -0.0456 22 1 1.3222 -1.4835 -1.5737 23 1 2.3430 -0.0854 -2.0129 24 1 4.1966 -1.2128 -1.2921 25 1 3.1750 -2.6111 -0.8532 26 1 3.3393 -3.2752 1.3005 27 1 3.9135 -2.2171 2.6116 28 1 5.8189 -2.1655 0.5277 29 1 8.8511 -5.2944 1.7027 30 1 1.4589 -1.6606 1.4225 31 1 2.1221 -0.1373 2.1011 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230418143.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:54 Heat of formation + Delta-G solvation = -15.475310 kcal Electronic energy + Delta-G solvation = -11188.339198 eV Core-core repulsion = 9275.856362 eV Total energy + Delta-G solvation = -1912.482836 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.49556 -34.69160 -31.95034 -30.36795 -28.84856 -25.89397 -23.71110 -21.76702 -19.99044 -19.22131 -17.44507 -15.91312 -14.58126 -14.33330 -13.84159 -13.29795 -13.27045 -13.01180 -12.54129 -12.29027 -11.63192 -11.53037 -10.89358 -10.75603 -10.67842 -10.44388 -10.35063 -10.22264 -10.09396 -9.94091 -9.53302 -8.83490 -7.16036 -5.72203 -3.06514 3.40702 3.43891 3.48013 4.63590 4.70063 4.82385 4.86610 5.39309 5.47920 5.48748 5.58826 5.61324 5.71048 5.81577 5.88072 5.94666 6.03528 6.05835 6.17054 6.24956 6.32589 6.45100 6.55573 6.60793 6.81109 6.94096 8.05490 8.47512 9.27495 10.00198 10.21249 11.46571 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.075204 B = 0.009168 C = 0.008546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 372.232656 B = 3053.385184 C = 3275.503167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 H 0.070 0.930 4 C -0.120 4.120 5 C -0.118 4.118 6 C -0.103 4.103 7 H 0.071 0.929 8 C 0.164 3.836 9 N -0.756 5.756 10 C -0.242 4.242 11 H 0.089 0.911 12 C 0.002 3.998 13 N -0.937 5.937 14 Si 0.884 3.116 15 H -0.285 1.285 16 H -0.291 1.291 17 H -0.277 1.277 18 C -0.111 4.111 19 H 0.052 0.948 20 H 0.050 0.950 21 H 0.055 0.945 22 H 0.061 0.939 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.026 0.974 27 H 0.025 0.975 28 H 0.360 0.640 29 H 0.259 0.741 30 H 0.069 0.931 31 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.711 10.561 -5.121 17.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 H 0.088 0.912 4 C -0.157 4.157 5 C -0.155 4.155 6 C -0.121 4.121 7 H 0.089 0.911 8 C 0.037 3.963 9 N -0.402 5.402 10 C -0.372 4.372 11 H 0.107 0.893 12 C -0.194 4.194 13 N -0.585 5.585 14 Si 0.715 3.285 15 H -0.211 1.211 16 H -0.218 1.218 17 H -0.203 1.203 18 C -0.149 4.149 19 H 0.071 0.929 20 H 0.069 0.931 21 H 0.074 0.926 22 H 0.079 0.921 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.087 0.913 26 H 0.044 0.956 27 H 0.043 0.957 28 H 0.193 0.807 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.671 10.350 -4.984 17.103 hybrid contribution 0.834 0.651 -0.901 1.390 sum -11.837 11.001 -5.885 17.198 Atomic orbital electron populations 1.21800 0.95397 1.01664 1.01134 1.21974 0.95041 0.99154 0.95570 0.91197 1.22231 0.97675 0.98611 0.97207 1.22167 0.96950 1.00676 0.95745 1.22210 0.96206 0.98713 0.95012 0.91091 1.20685 0.86112 0.93418 0.96079 1.42733 1.10513 1.35415 1.51512 1.19101 0.95167 1.03991 1.18895 0.89285 1.24672 0.96832 0.97976 0.99874 1.69703 1.12452 1.29624 1.46713 0.86536 0.79677 0.80296 0.82015 1.21133 1.21756 1.20305 1.22552 0.95947 0.99527 0.96880 0.92886 0.93131 0.92638 0.92069 0.92524 0.92363 0.91278 0.95612 0.95727 0.80711 0.93135 0.91262 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.14 37.16 0.34 -1.05 16 2 C -0.10 -1.14 3.45 -88.94 -0.31 -1.45 16 3 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 4 C -0.12 -1.48 6.38 -25.61 -0.16 -1.65 16 5 C -0.12 -1.82 6.23 -25.62 -0.16 -1.97 16 6 C -0.10 -1.66 2.89 -88.96 -0.26 -1.92 16 7 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 8 C 0.16 3.33 5.59 -4.04 -0.02 3.31 16 9 N -0.76 -18.80 5.30 -59.90 -0.32 -19.11 16 10 C -0.24 -7.10 10.47 -15.06 -0.16 -7.26 16 11 H 0.09 2.79 8.06 -52.49 -0.42 2.36 16 12 C 0.00 0.06 5.50 -17.43 -0.10 -0.04 16 13 N -0.94 -30.13 13.97 55.49 0.78 -29.36 16 14 Si 0.88 22.73 27.74 -169.99 -4.72 18.01 16 15 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 16 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 17 H -0.28 -6.71 6.51 56.52 0.37 -6.34 16 18 C -0.11 -1.46 5.75 -24.72 -0.14 -1.60 16 19 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 20 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 21 H 0.05 0.54 8.08 -51.93 -0.42 0.12 16 22 H 0.06 0.72 7.80 -51.93 -0.41 0.31 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.07 1.15 7.71 -51.93 -0.40 0.75 16 26 H 0.03 0.54 7.95 -51.93 -0.41 0.12 16 27 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.36 8.73 5.49 -40.82 -0.22 8.51 16 29 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 30 H 0.07 0.91 7.98 -51.93 -0.41 0.49 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 249.65 15.07 3.76 3.76 Total: -1.00 -31.34 249.65 -6.71 -38.05 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -5.25 Total: 2.27 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: -0.97 Total: -13.63 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: 0.46 Total: -48.47 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -4.72 Total: 18.01 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -31.34 -6.71 -38.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230418143.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.577 kcal (2) G-P(sol) polarization free energy of solvation -31.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds