Wall clock time and date at job start Mon Mar 30 2020 02:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 110.43521 * 2 1 4 4 C 1.54266 * 110.60017 * 237.37798 * 2 1 3 5 5 C 1.53871 * 106.60107 * 217.65810 * 4 2 1 6 6 C 1.54262 * 106.59727 * 0.02562 * 5 4 2 7 7 H 1.08998 * 110.60092 * 264.87259 * 6 5 4 8 8 C 1.53005 * 110.49048 * 142.28773 * 6 5 4 9 9 N 1.46505 * 109.46904 * 70.22367 * 8 6 5 10 10 C 1.36931 * 119.99788 * 180.02562 * 9 8 6 11 11 H 1.08002 * 120.00438 * 0.02562 * 10 9 8 12 12 C 1.38817 * 119.99680 * 179.72358 * 10 9 8 13 13 N 1.31617 * 119.99873 * 180.27450 * 12 10 9 14 14 Si 1.86800 * 120.00209 * 0.27770 * 12 10 9 15 15 H 1.48498 * 109.47118 * 89.99559 * 14 12 10 16 16 H 1.48499 * 109.47134 * 210.00079 * 14 12 10 17 17 H 1.48507 * 109.46904 * 329.99901 * 14 12 10 18 18 C 1.54889 * 104.19845 * 23.61166 * 6 5 4 19 19 H 1.08994 * 109.46960 * 297.46202 * 1 2 3 20 20 H 1.09004 * 109.46646 * 57.46113 * 1 2 3 21 21 H 1.09005 * 109.47128 * 177.45479 * 1 2 3 22 22 H 1.09005 * 110.03560 * 336.94281 * 4 2 1 23 23 H 1.08998 * 110.03397 * 98.32401 * 4 2 1 24 24 H 1.08997 * 110.03315 * 240.72052 * 5 4 2 25 25 H 1.09003 * 110.03459 * 119.28631 * 5 4 2 26 26 H 1.09003 * 109.46946 * 310.23126 * 8 6 5 27 27 H 1.08993 * 109.47679 * 190.22669 * 8 6 5 28 28 H 0.97000 * 119.99792 * 0.02562 * 9 8 6 29 29 H 0.97000 * 120.00553 * 180.02562 * 13 12 10 30 30 H 1.08999 * 110.75901 * 80.37087 * 18 6 5 31 31 H 1.08996 * 110.75701 * 203.74712 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0213 0.0000 4 6 2.0728 -0.7785 -1.2162 5 6 3.3202 -1.5377 -0.7312 6 6 3.4916 -1.1946 0.7630 7 1 4.1894 -0.3668 0.8888 8 6 3.9714 -2.4207 1.5424 9 7 5.3581 -2.7200 1.1766 10 6 6.0035 -3.7824 1.7507 11 1 5.4902 -4.4001 2.4729 12 6 7.3156 -4.0695 1.3998 13 7 7.9342 -5.0939 1.9476 14 14 8.2032 -3.0017 0.1502 15 1 8.8955 -1.8907 0.8514 16 1 9.2004 -3.8224 -0.5827 17 1 7.2190 -2.4431 -0.8115 18 6 2.0716 -0.7814 1.2232 19 1 -0.3633 0.4739 0.9118 20 1 -0.3633 0.5528 -0.8664 21 1 -0.3633 -1.0267 -0.0456 22 1 1.3222 -1.4835 -1.5737 23 1 2.3430 -0.0854 -2.0129 24 1 4.1966 -1.2128 -1.2921 25 1 3.1750 -2.6111 -0.8532 26 1 3.3393 -3.2752 1.3005 27 1 3.9135 -2.2171 2.6116 28 1 5.8189 -2.1655 0.5277 29 1 8.8511 -5.2944 1.7027 30 1 1.4589 -1.6606 1.4225 31 1 2.1221 -0.1373 2.1011 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230418143.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:54 Heat of formation + Delta-G solvation = -35.188001 kcal Electronic energy + Delta-G solvation = -11189.194005 eV Core-core repulsion = 9275.856362 eV Total energy + Delta-G solvation = -1913.337643 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.66439 -36.53923 -33.83303 -31.89499 -30.08565 -27.33807 -25.10772 -23.65296 -21.19339 -20.40523 -19.53447 -17.04234 -16.58783 -15.96124 -15.19448 -14.87770 -14.56061 -14.35616 -14.02844 -13.50099 -13.46151 -12.89482 -12.68932 -12.15227 -11.91715 -11.79322 -11.76734 -11.56487 -11.40613 -11.36425 -11.17943 -10.97535 -9.31404 -8.05323 -5.38658 1.35225 1.39131 1.46746 2.46310 3.25454 3.52194 3.72860 3.78980 4.00713 4.34824 4.48804 4.54796 4.61020 4.72873 4.79357 4.87781 4.90680 4.98868 5.09683 5.16816 5.22800 5.26960 5.40038 5.42493 5.55638 5.63904 5.73030 6.19248 7.05555 7.82351 8.02771 9.16482 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.075204 B = 0.009168 C = 0.008546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 372.232656 B = 3053.385184 C = 3275.503167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.093 4.093 3 H 0.079 0.921 4 C -0.114 4.114 5 C -0.120 4.120 6 C -0.098 4.098 7 H 0.072 0.928 8 C 0.161 3.839 9 N -0.758 5.758 10 C -0.239 4.239 11 H 0.054 0.946 12 C -0.065 4.065 13 N -0.984 5.984 14 Si 0.957 3.043 15 H -0.276 1.276 16 H -0.292 1.292 17 H -0.253 1.253 18 C -0.107 4.107 19 H 0.060 0.940 20 H 0.062 0.938 21 H 0.052 0.948 22 H 0.067 0.933 23 H 0.070 0.930 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.019 0.981 27 H 0.021 0.979 28 H 0.366 0.634 29 H 0.259 0.741 30 H 0.067 0.933 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.715 12.781 -6.512 19.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.112 4.112 3 H 0.097 0.903 4 C -0.152 4.152 5 C -0.158 4.158 6 C -0.117 4.117 7 H 0.090 0.910 8 C 0.035 3.965 9 N -0.404 5.404 10 C -0.370 4.370 11 H 0.072 0.928 12 C -0.256 4.256 13 N -0.635 5.635 14 Si 0.784 3.216 15 H -0.202 1.202 16 H -0.219 1.219 17 H -0.177 1.177 18 C -0.145 4.145 19 H 0.079 0.921 20 H 0.081 0.919 21 H 0.072 0.928 22 H 0.086 0.914 23 H 0.089 0.911 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.037 0.963 27 H 0.039 0.961 28 H 0.199 0.801 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.724 12.598 -6.380 19.692 hybrid contribution 1.089 -0.105 -0.385 1.160 sum -12.635 12.493 -6.764 19.013 Atomic orbital electron populations 1.21774 0.93824 1.01920 1.02208 1.21960 0.96312 0.99046 0.93877 0.90295 1.22206 0.96265 0.98774 0.97947 1.22166 0.98453 0.99997 0.95168 1.22155 0.97999 0.96436 0.95131 0.90987 1.20864 0.83821 0.95290 0.96558 1.42741 1.12087 1.34225 1.51303 1.19087 0.95401 1.04533 1.18024 0.92802 1.25548 0.97798 0.99711 1.02566 1.69888 1.12895 1.31901 1.48797 0.85371 0.78443 0.78311 0.79471 1.20218 1.21890 1.17714 1.22548 0.93784 0.99982 0.98206 0.92058 0.91862 0.92847 0.91399 0.91148 0.92891 0.93149 0.96261 0.96135 0.80102 0.93236 0.91398 0.90838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.14 71.98 0.66 -1.59 16 2 C -0.09 -1.85 3.45 -9.71 -0.03 -1.88 16 3 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 4 C -0.11 -2.50 6.38 31.32 0.20 -2.30 16 5 C -0.12 -3.49 6.23 31.32 0.20 -3.29 16 6 C -0.10 -3.02 2.89 -9.72 -0.03 -3.05 16 7 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 8 C 0.16 6.48 5.59 86.38 0.48 6.96 16 9 N -0.76 -37.41 5.30 -343.44 -1.82 -39.23 16 10 C -0.24 -14.33 10.47 84.04 0.88 -13.45 16 11 H 0.05 3.52 8.06 -2.91 -0.02 3.50 16 12 C -0.06 -3.95 5.50 84.86 0.47 -3.49 16 13 N -0.98 -64.72 13.97 21.65 0.30 -64.42 16 14 Si 0.96 46.72 27.74 68.60 1.90 48.62 16 15 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 16 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 17 H -0.25 -11.18 6.51 99.48 0.65 -10.53 16 18 C -0.11 -2.56 5.75 31.90 0.18 -2.38 16 19 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 20 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 21 H 0.05 0.88 8.08 -2.38 -0.02 0.86 16 22 H 0.07 1.40 7.80 -2.38 -0.02 1.38 16 23 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.05 1.63 7.71 -2.39 -0.02 1.61 16 26 H 0.02 0.81 7.95 -2.39 -0.02 0.79 16 27 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.37 17.14 5.49 -92.71 -0.51 16.63 16 29 H 0.26 16.11 8.31 -92.71 -0.77 15.34 16 30 H 0.07 1.64 7.98 -2.39 -0.02 1.63 16 31 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -67.43 249.65 3.90 -63.53 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: 0.51 Total: 15.97 kcal Atomic # 6 Polarization: -27.47 SS G_CDS: 3.00 Total: -24.47 kcal Atomic # 7 Polarization: -102.13 SS G_CDS: -1.52 Total: -103.65 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 1.90 Total: 48.62 kcal Total: -67.43 3.90 -63.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230418143.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.340 kcal (2) G-P(sol) polarization free energy of solvation -67.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds