Wall clock time and date at job start Mon Mar 30 2020 02:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.43627 * 2 1 4 4 C 1.54890 * 110.48490 * 122.54169 * 2 1 3 5 5 C 1.54886 * 102.75126 * 156.74784 * 4 2 1 6 6 C 1.54269 * 104.19544 * 322.06034 * 5 4 2 7 7 H 1.09002 * 110.03049 * 264.32131 * 6 5 4 8 8 C 1.53000 * 110.03227 * 142.93793 * 6 5 4 9 9 N 1.46496 * 109.46965 * 67.09457 * 8 6 5 10 10 C 1.36940 * 120.00202 * 179.97438 * 9 8 6 11 11 H 1.08001 * 119.99893 * 359.97438 * 10 9 8 12 12 C 1.38806 * 120.00509 * 179.97438 * 10 9 8 13 13 N 1.31624 * 119.99685 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00362 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.46912 * 59.99950 * 14 12 10 16 16 H 1.48498 * 109.47170 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.46880 * 300.00035 * 14 12 10 18 18 C 1.53879 * 106.59574 * 23.60569 * 6 5 4 19 19 H 1.09004 * 109.47079 * 298.91403 * 1 2 3 20 20 H 1.08993 * 109.47287 * 58.90877 * 1 2 3 21 21 H 1.08999 * 109.47306 * 178.91627 * 1 2 3 22 22 H 1.09003 * 110.75715 * 38.43748 * 4 2 1 23 23 H 1.08996 * 110.91807 * 275.14117 * 4 2 1 24 24 H 1.08994 * 110.49258 * 203.37966 * 5 4 2 25 25 H 1.09000 * 110.48246 * 80.73408 * 5 4 2 26 26 H 1.09001 * 109.46702 * 187.09126 * 8 6 5 27 27 H 1.08994 * 109.47550 * 307.08915 * 8 6 5 28 28 H 0.96998 * 120.00322 * 359.97438 * 9 8 6 29 29 H 0.97004 * 119.99334 * 179.97438 * 13 12 10 30 30 H 1.09002 * 110.02843 * 119.29065 * 18 6 5 31 31 H 1.09003 * 110.02660 * 240.70908 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0721 -0.7805 1.2232 5 6 3.4919 -1.1942 0.7629 6 6 3.3201 -1.5377 -0.7313 7 1 3.1748 -2.6111 -0.8533 8 6 4.5507 -1.0829 -1.5185 9 7 5.7098 -1.8846 -1.1186 10 6 6.9315 -1.6564 -1.6937 11 1 7.0404 -0.8856 -2.4424 12 6 8.0299 -2.4156 -1.3146 13 7 7.8972 -3.3553 -0.4025 14 14 9.6962 -2.1047 -2.0996 15 1 10.1168 -0.7060 -1.8307 16 1 10.6961 -3.0407 -1.5258 17 1 9.6004 -2.3197 -3.5658 18 6 2.0727 -0.7784 -1.2162 19 1 -0.3633 0.4969 0.8996 20 1 -0.3633 0.5306 -0.8800 21 1 -0.3634 -1.0275 -0.0194 22 1 1.4594 -1.6596 1.4229 23 1 2.1228 -0.1389 2.1028 24 1 3.8337 -2.0676 1.3182 25 1 4.1894 -0.3657 0.8860 26 1 4.3686 -1.2143 -2.5851 27 1 4.7471 -0.0312 -1.3102 28 1 5.6121 -2.5772 -0.4466 29 1 8.6647 -3.8861 -0.1379 30 1 2.3437 -0.0853 -2.0126 31 1 1.3221 -1.4834 -1.5737 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230418145.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:56 Heat of formation + Delta-G solvation = -37.820263 kcal Electronic energy + Delta-G solvation = -11152.045625 eV Core-core repulsion = 9238.593838 eV Total energy + Delta-G solvation = -1913.451786 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.66650 -36.36459 -33.66207 -31.55419 -29.99066 -27.16142 -25.23080 -23.84418 -21.12499 -20.42173 -19.04803 -17.00578 -16.23325 -16.05630 -15.34667 -14.89326 -14.47436 -14.37386 -13.71667 -13.42898 -13.06078 -12.81793 -12.62515 -12.22203 -12.07920 -11.75958 -11.68146 -11.54468 -11.37046 -11.31540 -11.22205 -10.90623 -9.01219 -7.96450 -5.25728 1.45560 1.49574 1.55856 2.55286 3.36310 3.65945 3.77218 3.85698 4.17430 4.37604 4.49621 4.62155 4.64630 4.74747 4.78550 4.85307 4.96983 5.01078 5.12381 5.18585 5.22662 5.28826 5.41118 5.43267 5.49042 5.60436 5.63063 6.26082 7.31656 8.08634 8.32942 9.27272 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.098000 B = 0.008000 C = 0.007685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 285.645733 B = 3499.131068 C = 3642.543565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.095 4.095 3 H 0.071 0.929 4 C -0.112 4.112 5 C -0.114 4.114 6 C -0.095 4.095 7 H 0.058 0.942 8 C 0.159 3.841 9 N -0.746 5.746 10 C -0.252 4.252 11 H 0.074 0.926 12 C -0.077 4.077 13 N -0.971 5.971 14 Si 0.978 3.022 15 H -0.277 1.277 16 H -0.293 1.293 17 H -0.277 1.277 18 C -0.107 4.107 19 H 0.062 0.938 20 H 0.060 0.940 21 H 0.057 0.943 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.047 0.953 25 H 0.049 0.951 26 H 0.015 0.985 27 H 0.016 0.984 28 H 0.374 0.626 29 H 0.252 0.748 30 H 0.064 0.936 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.655 6.206 0.963 15.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.113 4.113 3 H 0.089 0.911 4 C -0.150 4.150 5 C -0.152 4.152 6 C -0.114 4.114 7 H 0.077 0.923 8 C 0.032 3.968 9 N -0.388 5.388 10 C -0.383 4.383 11 H 0.092 0.908 12 C -0.269 4.269 13 N -0.622 5.622 14 Si 0.806 3.194 15 H -0.203 1.203 16 H -0.219 1.219 17 H -0.203 1.203 18 C -0.145 4.145 19 H 0.081 0.919 20 H 0.079 0.921 21 H 0.076 0.924 22 H 0.091 0.909 23 H 0.091 0.909 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.032 0.968 27 H 0.034 0.966 28 H 0.205 0.795 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.549 6.299 0.835 14.965 hybrid contribution 1.283 -0.384 -0.116 1.345 sum -12.266 5.914 0.720 13.636 Atomic orbital electron populations 1.21760 0.93424 1.02116 1.02191 1.21956 0.96496 0.98826 0.94035 0.91079 1.22554 0.94532 1.00073 0.97797 1.22297 0.97787 1.00120 0.94987 1.21883 0.94520 0.99600 0.95410 0.92328 1.20955 0.86522 0.93485 0.95810 1.42596 1.05457 1.42145 1.48609 1.19650 0.87570 1.14389 1.16731 0.90834 1.25623 1.01931 0.98835 1.00483 1.69828 1.30861 1.25639 1.35858 0.85154 0.79077 0.77249 0.77934 1.20313 1.21866 1.20281 1.22193 0.95411 0.98765 0.98111 0.91878 0.92093 0.92421 0.90873 0.90946 0.93419 0.93259 0.96752 0.96582 0.79464 0.93903 0.91767 0.90709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.13 71.98 0.66 -1.73 16 2 C -0.09 -2.15 3.45 -9.72 -0.03 -2.18 16 3 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 4 C -0.11 -2.77 6.33 31.88 0.20 -2.57 16 5 C -0.11 -3.81 6.05 31.67 0.19 -3.62 16 6 C -0.10 -3.29 2.97 -10.07 -0.03 -3.32 16 7 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 8 C 0.16 6.84 5.32 86.38 0.46 7.30 16 9 N -0.75 -40.35 5.44 -343.47 -1.87 -42.21 16 10 C -0.25 -14.78 9.99 84.03 0.84 -13.94 16 11 H 0.07 4.14 7.83 -2.91 -0.02 4.12 16 12 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 13 N -0.97 -61.33 13.06 21.65 0.28 -61.05 16 14 Si 0.98 47.31 29.55 68.60 2.03 49.34 16 15 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 16 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 17 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 18 C -0.11 -2.82 6.03 31.32 0.19 -2.63 16 19 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 20 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 21 H 0.06 0.97 8.11 -2.39 -0.02 0.95 16 22 H 0.07 1.67 8.06 -2.39 -0.02 1.65 16 23 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.05 1.81 7.77 -2.39 -0.02 1.79 16 26 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.02 0.70 8.02 -2.39 -0.02 0.69 16 28 H 0.37 21.36 7.53 -92.71 -0.70 20.66 16 29 H 0.25 15.35 8.31 -92.71 -0.77 14.58 16 30 H 0.06 1.68 7.67 -2.39 -0.02 1.67 16 31 H 0.07 1.76 7.82 -2.39 -0.02 1.75 16 Total: -1.00 -64.87 252.26 3.76 -61.11 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: 0.38 Total: 19.60 kcal Atomic # 6 Polarization: -29.73 SS G_CDS: 2.94 Total: -26.79 kcal Atomic # 7 Polarization: -101.68 SS G_CDS: -1.59 Total: -103.26 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Total: -64.87 3.76 -61.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230418145.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.289 kcal (2) G-P(sol) polarization free energy of solvation -64.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds