Wall clock time and date at job start Mon Mar 30 2020 01:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47175 * 2 1 4 4 C 1.52995 * 109.47382 * 175.06919 * 3 2 1 5 5 C 1.53001 * 115.54757 * 278.02952 * 4 3 2 6 6 N 1.46500 * 109.47249 * 303.89928 * 5 4 3 7 7 C 1.36943 * 120.00015 * 175.58951 * 6 5 4 8 8 H 1.08000 * 120.00056 * 359.97438 * 7 6 5 9 9 C 1.38813 * 119.99906 * 180.02562 * 7 6 5 10 10 N 1.31624 * 120.00030 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 119.99857 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47181 * 0.02562 * 11 9 7 13 13 H 1.48509 * 109.47062 * 120.00029 * 11 9 7 14 14 H 1.48498 * 109.47309 * 239.99530 * 11 9 7 15 15 C 1.52997 * 117.50314 * 132.32627 * 4 3 2 16 16 C 1.52996 * 117.50386 * 63.70018 * 4 3 2 17 17 H 1.08997 * 109.46650 * 60.00092 * 1 2 3 18 18 H 1.08995 * 109.46459 * 180.02562 * 1 2 3 19 19 H 1.08995 * 109.46889 * 300.00149 * 1 2 3 20 20 H 1.08989 * 109.47538 * 239.99653 * 2 1 3 21 21 H 1.08998 * 109.47075 * 119.99584 * 2 1 3 22 22 H 1.09008 * 109.46646 * 295.06733 * 3 2 1 23 23 H 1.09003 * 109.47328 * 55.06000 * 3 2 1 24 24 H 1.09005 * 109.47256 * 63.89659 * 5 4 3 25 25 H 1.08997 * 109.47586 * 183.90064 * 5 4 3 26 26 H 0.96997 * 119.99983 * 355.59439 * 6 5 4 27 27 H 0.96998 * 119.99855 * 179.97438 * 10 9 7 28 28 H 1.09000 * 117.49658 * 359.97438 * 15 4 3 29 29 H 1.08996 * 117.50159 * 145.01707 * 15 4 3 30 30 H 1.08997 * 117.50283 * 214.98417 * 16 4 3 31 31 H 1.09001 * 117.49300 * 0.02562 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5650 1.4443 0.1240 5 6 4.1117 1.2915 1.5448 6 7 3.5550 2.3443 2.3981 7 6 3.8316 2.3564 3.7392 8 1 4.4598 1.5896 4.1680 9 6 3.3038 3.3536 4.5478 10 7 2.5369 4.2872 4.0255 11 14 3.6805 3.3697 6.3773 12 1 4.5587 2.2199 6.7120 13 1 4.3695 4.6372 6.7297 14 1 2.4134 3.2653 7.1446 15 6 4.3515 2.3298 -0.8445 16 6 4.3671 0.8093 -1.0136 17 1 -0.3632 0.5138 -0.8900 18 1 -0.3632 -1.0277 0.0005 19 1 -0.3633 0.5138 0.8899 20 1 1.8934 -0.5138 -0.8898 21 1 1.8934 -0.5138 0.8900 22 1 1.7506 1.9302 -0.9310 23 1 1.6063 1.9813 0.8424 24 1 3.8286 0.3159 1.9401 25 1 5.1983 1.3750 1.5270 26 1 2.9905 3.0327 2.0131 27 1 2.1677 4.9838 4.5906 28 1 3.7826 2.9108 -1.5704 29 1 5.2586 2.8039 -0.4696 30 1 5.2844 0.2829 -0.7499 31 1 3.8084 0.3906 -1.8506 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232936663.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:04 Heat of formation + Delta-G solvation = 13.866570 kcal Electronic energy + Delta-G solvation = -11216.129573 eV Core-core repulsion = 9304.919096 eV Total energy + Delta-G solvation = -1911.210477 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.24133 -33.93512 -33.34636 -30.70976 -27.06136 -25.58343 -22.66803 -22.20375 -21.04733 -18.33664 -17.01492 -15.31549 -14.76304 -14.40188 -13.77035 -13.23375 -13.01124 -12.74814 -12.28712 -11.98233 -11.53772 -11.16136 -11.02095 -10.87072 -10.79971 -10.43307 -10.11117 -10.00934 -9.83297 -9.51033 -9.16343 -8.78317 -6.83898 -5.71151 -2.98658 3.46236 3.51717 3.54090 4.19090 4.65727 5.09378 5.24956 5.30676 5.39294 5.55927 5.59279 5.65476 5.85857 5.96184 6.09141 6.17880 6.22328 6.28966 6.32367 6.40376 6.52210 6.56414 6.67226 6.85371 6.89281 6.98093 7.75204 8.48278 9.59486 10.19486 10.55190 11.51988 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.042833 B = 0.010565 C = 0.009384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.548538 B = 2649.689019 C = 2983.150020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.081 4.081 4 C -0.119 4.119 5 C 0.189 3.811 6 N -0.728 5.728 7 C -0.236 4.236 8 H 0.070 0.930 9 C -0.016 4.016 10 N -0.933 5.933 11 Si 0.906 3.094 12 H -0.281 1.281 13 H -0.292 1.292 14 H -0.292 1.292 15 C -0.172 4.172 16 C -0.179 4.179 17 H 0.048 0.952 18 H 0.047 0.953 19 H 0.057 0.943 20 H 0.053 0.947 21 H 0.064 0.936 22 H 0.052 0.948 23 H 0.081 0.919 24 H 0.024 0.976 25 H 0.014 0.986 26 H 0.385 0.615 27 H 0.254 0.746 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.410 -6.720 -9.231 11.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.119 4.119 4 C -0.119 4.119 5 C 0.062 3.938 6 N -0.372 5.372 7 C -0.367 4.367 8 H 0.088 0.912 9 C -0.211 4.211 10 N -0.583 5.583 11 Si 0.737 3.263 12 H -0.206 1.206 13 H -0.219 1.219 14 H -0.219 1.219 15 C -0.210 4.210 16 C -0.217 4.217 17 H 0.067 0.933 18 H 0.067 0.933 19 H 0.076 0.924 20 H 0.071 0.929 21 H 0.082 0.918 22 H 0.070 0.930 23 H 0.100 0.900 24 H 0.042 0.958 25 H 0.032 0.968 26 H 0.219 0.781 27 H 0.063 0.937 28 H 0.105 0.895 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.342 -6.772 -9.061 11.317 hybrid contribution 0.050 0.340 0.887 0.951 sum -0.293 -6.432 -8.174 10.405 Atomic orbital electron populations 1.21774 0.96437 1.00906 1.01756 1.21431 0.95089 0.97259 1.01601 1.21111 0.92196 0.96606 1.01950 1.21756 0.93878 1.03751 0.92557 1.20145 0.94765 0.92554 0.86369 1.42336 1.59884 1.30047 1.04944 1.19294 1.24661 1.08363 0.84385 0.91242 1.24725 1.00499 0.97895 0.98020 1.69678 1.37863 1.16276 1.34435 0.86129 0.77363 0.77184 0.85622 1.20605 1.21944 1.21923 1.22989 1.02748 0.92653 1.02563 1.22912 1.02184 0.95910 1.00672 0.93286 0.93346 0.92405 0.92862 0.91759 0.92975 0.90000 0.95808 0.96803 0.78080 0.93653 0.89484 0.88980 0.89296 0.89425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.91 37.16 0.37 -1.65 16 2 C -0.12 -1.72 5.75 -26.73 -0.15 -1.87 16 3 C -0.08 -1.36 5.08 -26.73 -0.14 -1.50 16 4 C -0.12 -2.09 1.65 -154.51 -0.25 -2.34 16 5 C 0.19 4.05 6.15 -4.04 -0.02 4.02 16 6 N -0.73 -19.05 5.23 -59.91 -0.31 -19.37 16 7 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.53 16 9 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 10 N -0.93 -28.74 13.06 55.49 0.72 -28.02 16 11 Si 0.91 22.83 29.55 -169.99 -5.02 17.81 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 13 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 14 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 15 C -0.17 -2.76 9.87 -26.73 -0.26 -3.02 16 16 C -0.18 -2.59 9.57 -26.73 -0.26 -2.85 16 17 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 18 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 19 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 20 H 0.05 0.70 7.72 -51.94 -0.40 0.30 16 21 H 0.06 1.03 7.96 -51.93 -0.41 0.62 16 22 H 0.05 0.80 7.93 -51.92 -0.41 0.39 16 23 H 0.08 1.63 6.94 -51.93 -0.36 1.27 16 24 H 0.02 0.52 7.96 -51.93 -0.41 0.11 16 25 H 0.01 0.31 8.10 -51.93 -0.42 -0.11 16 26 H 0.39 10.58 6.80 -40.82 -0.28 10.30 16 27 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.09 1.28 8.07 -51.93 -0.42 0.86 16 29 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 30 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 31 H 0.09 1.12 7.90 -51.93 -0.41 0.71 16 LS Contribution 258.87 15.07 3.90 3.90 Total: -1.00 -30.11 258.87 -6.86 -36.97 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -5.19 Total: 5.39 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: -0.97 Total: -16.69 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: 0.41 Total: -47.38 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -30.11 -6.86 -36.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232936663.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.837 kcal (2) G-P(sol) polarization free energy of solvation -30.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds