Wall clock time and date at job start Mon Mar 30 2020 01:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47175 * 2 1 4 4 C 1.52995 * 109.47382 * 175.06919 * 3 2 1 5 5 C 1.53001 * 115.54757 * 278.02952 * 4 3 2 6 6 N 1.46500 * 109.47249 * 303.89928 * 5 4 3 7 7 C 1.36943 * 120.00015 * 175.58951 * 6 5 4 8 8 H 1.08000 * 120.00056 * 359.97438 * 7 6 5 9 9 C 1.38813 * 119.99906 * 180.02562 * 7 6 5 10 10 N 1.31624 * 120.00030 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 119.99857 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47181 * 0.02562 * 11 9 7 13 13 H 1.48509 * 109.47062 * 120.00029 * 11 9 7 14 14 H 1.48498 * 109.47309 * 239.99530 * 11 9 7 15 15 C 1.52997 * 117.50314 * 132.32627 * 4 3 2 16 16 C 1.52996 * 117.50386 * 63.70018 * 4 3 2 17 17 H 1.08997 * 109.46650 * 60.00092 * 1 2 3 18 18 H 1.08995 * 109.46459 * 180.02562 * 1 2 3 19 19 H 1.08995 * 109.46889 * 300.00149 * 1 2 3 20 20 H 1.08989 * 109.47538 * 239.99653 * 2 1 3 21 21 H 1.08998 * 109.47075 * 119.99584 * 2 1 3 22 22 H 1.09008 * 109.46646 * 295.06733 * 3 2 1 23 23 H 1.09003 * 109.47328 * 55.06000 * 3 2 1 24 24 H 1.09005 * 109.47256 * 63.89659 * 5 4 3 25 25 H 1.08997 * 109.47586 * 183.90064 * 5 4 3 26 26 H 0.96997 * 119.99983 * 355.59439 * 6 5 4 27 27 H 0.96998 * 119.99855 * 179.97438 * 10 9 7 28 28 H 1.09000 * 117.49658 * 359.97438 * 15 4 3 29 29 H 1.08996 * 117.50159 * 145.01707 * 15 4 3 30 30 H 1.08997 * 117.50283 * 214.98417 * 16 4 3 31 31 H 1.09001 * 117.49300 * 0.02562 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5650 1.4443 0.1240 5 6 4.1117 1.2915 1.5448 6 7 3.5550 2.3443 2.3981 7 6 3.8316 2.3564 3.7392 8 1 4.4598 1.5896 4.1680 9 6 3.3038 3.3536 4.5478 10 7 2.5369 4.2872 4.0255 11 14 3.6805 3.3697 6.3773 12 1 4.5587 2.2199 6.7120 13 1 4.3695 4.6372 6.7297 14 1 2.4134 3.2653 7.1446 15 6 4.3515 2.3298 -0.8445 16 6 4.3671 0.8093 -1.0136 17 1 -0.3632 0.5138 -0.8900 18 1 -0.3632 -1.0277 0.0005 19 1 -0.3633 0.5138 0.8899 20 1 1.8934 -0.5138 -0.8898 21 1 1.8934 -0.5138 0.8900 22 1 1.7506 1.9302 -0.9310 23 1 1.6063 1.9813 0.8424 24 1 3.8286 0.3159 1.9401 25 1 5.1983 1.3750 1.5270 26 1 2.9905 3.0327 2.0131 27 1 2.1677 4.9838 4.5906 28 1 3.7826 2.9108 -1.5704 29 1 5.2586 2.8039 -0.4696 30 1 5.2844 0.2829 -0.7499 31 1 3.8084 0.3906 -1.8506 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232936663.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:03 Heat of formation + Delta-G solvation = -3.981778 kcal Electronic energy + Delta-G solvation = -11216.903535 eV Core-core repulsion = 9304.919096 eV Total energy + Delta-G solvation = -1911.984440 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.61806 -35.94331 -34.54448 -32.79669 -28.46037 -27.36303 -24.61825 -23.48041 -22.26539 -19.88024 -19.02566 -16.86138 -16.37644 -16.04797 -15.32776 -15.01955 -14.48806 -14.28981 -13.83243 -13.45474 -12.93082 -12.85366 -12.74165 -12.30464 -12.14969 -12.09851 -11.91566 -11.66331 -11.36241 -11.07696 -10.87706 -10.42672 -8.98312 -7.95312 -5.23628 1.45715 1.46890 1.57119 2.54170 2.93452 3.37694 3.82300 3.90084 4.05038 4.09290 4.32331 4.37603 4.50016 4.63576 4.81600 4.85356 4.96032 5.03187 5.06708 5.11108 5.16287 5.23994 5.33952 5.44213 5.48214 5.52150 5.57117 6.27079 7.33329 8.10476 8.35548 9.28628 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.042833 B = 0.010565 C = 0.009384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.548538 B = 2649.689019 C = 2983.150020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C -0.075 4.075 4 C -0.143 4.143 5 C 0.189 3.811 6 N -0.739 5.739 7 C -0.246 4.246 8 H 0.073 0.927 9 C -0.076 4.076 10 N -0.969 5.969 11 Si 0.974 3.026 12 H -0.267 1.267 13 H -0.292 1.292 14 H -0.292 1.292 15 C -0.177 4.177 16 C -0.145 4.145 17 H 0.063 0.937 18 H 0.066 0.934 19 H 0.035 0.965 20 H 0.078 0.922 21 H 0.044 0.956 22 H 0.070 0.930 23 H 0.040 0.960 24 H 0.020 0.980 25 H 0.012 0.988 26 H 0.375 0.625 27 H 0.251 0.749 28 H 0.102 0.898 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.043 -7.881 -10.239 12.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.149 4.149 3 C -0.113 4.113 4 C -0.144 4.144 5 C 0.062 3.938 6 N -0.381 5.381 7 C -0.377 4.377 8 H 0.091 0.909 9 C -0.268 4.268 10 N -0.620 5.620 11 Si 0.803 3.197 12 H -0.191 1.191 13 H -0.219 1.219 14 H -0.219 1.219 15 C -0.214 4.214 16 C -0.183 4.183 17 H 0.082 0.918 18 H 0.085 0.915 19 H 0.055 0.945 20 H 0.097 0.903 21 H 0.063 0.937 22 H 0.088 0.912 23 H 0.059 0.941 24 H 0.038 0.962 25 H 0.029 0.971 26 H 0.207 0.793 27 H 0.060 0.940 28 H 0.120 0.880 29 H 0.098 0.902 30 H 0.116 0.884 31 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.048 -7.969 -10.084 12.853 hybrid contribution -0.034 0.670 1.154 1.335 sum 0.014 -7.299 -8.930 11.533 Atomic orbital electron populations 1.21758 0.95488 1.02001 1.01429 1.21405 0.95939 0.95800 1.01785 1.21028 0.91628 0.97652 1.00984 1.21613 0.94536 1.07114 0.91106 1.20227 0.94370 0.90825 0.88332 1.42522 1.59879 1.30905 1.04824 1.19687 1.24087 1.08168 0.85796 0.90902 1.25572 1.00862 0.97826 1.02554 1.69837 1.39224 1.17030 1.35909 0.85060 0.77144 0.77387 0.80096 1.19102 1.21921 1.21895 1.23053 1.02047 0.94131 1.02145 1.23015 1.01596 0.94644 0.99010 0.91835 0.91541 0.94534 0.90337 0.93742 0.91177 0.94130 0.96233 0.97062 0.79261 0.94003 0.88001 0.90191 0.88428 0.86675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.77 9.91 71.98 0.71 -3.05 16 2 C -0.11 -3.12 5.75 30.60 0.18 -2.94 16 3 C -0.08 -2.47 5.08 30.59 0.16 -2.32 16 4 C -0.14 -4.86 1.65 -52.19 -0.09 -4.95 16 5 C 0.19 8.11 6.15 86.38 0.53 8.64 16 6 N -0.74 -39.52 5.23 -343.44 -1.80 -41.32 16 7 C -0.25 -14.29 9.99 84.03 0.84 -13.45 16 8 H 0.07 4.09 7.83 -2.91 -0.02 4.07 16 9 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 10 N -0.97 -60.89 13.06 21.65 0.28 -60.61 16 11 Si 0.97 47.31 29.55 68.60 2.03 49.34 16 12 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 13 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 14 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 15 C -0.18 -5.32 9.87 30.59 0.30 -5.02 16 16 C -0.15 -3.72 9.57 30.59 0.29 -3.43 16 17 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 18 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 19 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 20 H 0.08 1.80 7.72 -2.39 -0.02 1.78 16 21 H 0.04 1.40 7.96 -2.39 -0.02 1.38 16 22 H 0.07 2.01 7.93 -2.38 -0.02 1.99 16 23 H 0.04 1.65 6.94 -2.39 -0.02 1.64 16 24 H 0.02 0.86 7.96 -2.38 -0.02 0.84 16 25 H 0.01 0.50 8.10 -2.39 -0.02 0.48 16 26 H 0.38 21.31 6.80 -92.71 -0.63 20.68 16 27 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 28 H 0.10 2.75 8.07 -2.39 -0.02 2.73 16 29 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 30 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.12 2.38 7.90 -2.39 -0.02 2.36 16 Total: -1.00 -64.62 258.87 4.36 -60.27 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 0.45 Total: 22.86 kcal Atomic # 6 Polarization: -33.94 SS G_CDS: 3.39 Total: -30.55 kcal Atomic # 7 Polarization: -100.41 SS G_CDS: -1.51 Total: -101.93 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Total: -64.62 4.36 -60.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232936663.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.284 kcal (2) G-P(sol) polarization free energy of solvation -64.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds