Wall clock time and date at job start Mon Mar 30 2020 02:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47033 * 2 1 4 4 H 1.09001 * 115.56398 * 330.68287 * 3 2 1 5 5 C 1.53002 * 117.49743 * 116.37607 * 3 2 1 6 6 C 1.52998 * 60.00103 * 107.48729 * 5 3 2 7 7 H 1.09001 * 117.49945 * 252.48790 * 6 5 3 8 8 N 1.46903 * 117.50130 * 107.48679 * 6 5 3 9 9 C 1.46896 * 111.00106 * 136.38926 * 8 6 5 10 10 C 1.52996 * 109.47256 * 180.02562 * 9 8 6 11 11 C 1.50702 * 109.47159 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48504 * 109.47196 * 60.00645 * 15 13 11 17 17 H 1.48504 * 109.46887 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47679 * 300.00280 * 15 13 11 19 19 H 1.09008 * 109.46808 * 60.00195 * 1 2 3 20 20 H 1.09001 * 109.47335 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47682 * 300.00360 * 1 2 3 22 22 H 1.08996 * 109.47337 * 239.99343 * 2 1 3 23 23 H 1.09008 * 109.46808 * 119.99805 * 2 1 3 24 24 H 1.09001 * 117.50185 * 359.97438 * 5 3 2 25 25 H 1.09001 * 117.50038 * 214.97197 * 5 3 2 26 26 H 1.00900 * 110.99721 * 12.44227 * 8 6 5 27 27 H 1.09004 * 109.46774 * 60.00282 * 9 8 6 28 28 H 1.09000 * 109.47723 * 300.00671 * 9 8 6 29 29 H 1.09004 * 109.47066 * 60.00378 * 10 9 8 30 30 H 1.08994 * 109.47405 * 300.00209 * 10 9 8 31 31 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3884 2.1717 -0.4815 5 6 2.8439 1.9075 1.2159 6 6 3.5501 1.6578 -0.1182 7 1 4.1806 0.7721 -0.1958 8 7 4.0109 2.8316 -0.8719 9 6 5.3629 2.6174 -1.4049 10 6 5.8076 3.8585 -2.1813 11 6 7.1944 3.6385 -2.7287 12 1 7.7071 2.7064 -2.5419 13 6 7.8061 4.6247 -3.4732 14 7 7.1816 5.7594 -3.7010 15 14 9.5219 4.3489 -4.1582 16 1 9.5104 3.1714 -5.0631 17 1 9.9516 5.5517 -4.9158 18 1 10.4681 4.1046 -3.0400 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 1.8933 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 3.0091 1.1860 2.0160 25 1 2.7213 2.9428 1.5344 26 1 3.9744 3.6639 -0.3027 27 1 5.3584 1.7542 -2.0706 28 1 6.0540 2.4374 -0.5815 29 1 5.8122 4.7213 -1.5152 30 1 5.1167 4.0388 -3.0048 31 1 7.6121 6.4534 -4.2245 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234098227.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:27 Heat of formation + Delta-G solvation = -0.763957 kcal Electronic energy + Delta-G solvation = -10625.413729 eV Core-core repulsion = 8713.568825 eV Total energy + Delta-G solvation = -1911.844904 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.13329 -34.64587 -32.75561 -31.36466 -28.37288 -24.18787 -23.60778 -21.10225 -20.69254 -19.99092 -16.35821 -15.25843 -15.06265 -14.41975 -14.35295 -14.00791 -12.92645 -12.55258 -12.21629 -12.10248 -11.92967 -11.29928 -11.17148 -10.94601 -10.91388 -10.64562 -10.41821 -9.91509 -9.80931 -9.26738 -9.13744 -8.33745 -7.63126 -5.98625 -4.01372 3.34545 3.38715 3.41169 4.00682 4.40414 4.55397 4.98733 5.10327 5.24331 5.28571 5.37235 5.39467 5.60305 5.80560 5.89091 5.95911 6.04187 6.15266 6.17048 6.34733 6.43171 6.51616 6.97809 7.51780 7.73489 7.83391 7.95856 8.09165 8.44234 9.05522 9.62261 11.12873 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.094481 B = 0.006154 C = 0.006098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 296.285156 B = 4549.156972 C = 4590.720255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.147 4.147 4 H 0.105 0.895 5 C -0.208 4.208 6 C 0.034 3.966 7 H 0.103 0.897 8 N -0.661 5.661 9 C 0.067 3.933 10 C 0.024 3.976 11 C -0.522 4.522 12 H 0.054 0.946 13 C 0.058 3.942 14 N -0.894 5.894 15 Si 0.894 3.106 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.277 1.277 19 H 0.055 0.945 20 H 0.050 0.950 21 H 0.052 0.948 22 H 0.064 0.936 23 H 0.058 0.942 24 H 0.088 0.912 25 H 0.091 0.909 26 H 0.338 0.662 27 H 0.059 0.941 28 H 0.017 0.983 29 H 0.014 0.986 30 H 0.025 0.975 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.986 -8.609 7.774 14.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.130 4.130 3 C -0.167 4.167 4 H 0.123 0.877 5 C -0.247 4.247 6 C -0.077 4.077 7 H 0.121 0.879 8 N -0.291 5.291 9 C -0.061 4.061 10 C -0.013 4.013 11 C -0.561 4.561 12 H 0.072 0.928 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.722 3.278 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.203 1.203 19 H 0.074 0.926 20 H 0.069 0.931 21 H 0.071 0.929 22 H 0.083 0.917 23 H 0.077 0.923 24 H 0.107 0.893 25 H 0.110 0.890 26 H 0.157 0.843 27 H 0.078 0.922 28 H 0.036 0.964 29 H 0.032 0.968 30 H 0.044 0.956 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.250 -8.607 7.077 14.482 hybrid contribution 1.459 0.062 0.429 1.522 sum -7.791 -8.545 7.507 13.786 Atomic orbital electron populations 1.21737 0.95768 1.01128 1.01858 1.21086 0.95692 0.94576 1.01620 1.22616 0.95168 0.97461 1.01463 0.87683 1.23578 1.06937 1.02039 0.92184 1.22567 0.94107 0.96295 0.94775 0.87921 1.60326 1.27628 1.02945 1.38156 1.22213 0.85055 1.01696 0.97132 1.19079 0.95829 0.91201 0.95221 1.21136 1.00761 1.01276 1.32959 0.92774 1.25004 0.97925 0.95180 0.96227 1.69967 1.37798 1.05742 1.39779 0.86633 0.84540 0.77539 0.79126 1.20204 1.21250 1.20284 0.92605 0.93075 0.92856 0.91694 0.92304 0.89318 0.89036 0.84302 0.92213 0.96420 0.96790 0.95620 0.92922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.87 37.16 0.37 -1.06 16 2 C -0.09 -1.03 6.22 -26.73 -0.17 -1.20 16 3 C -0.15 -1.97 5.66 -90.62 -0.51 -2.48 16 4 H 0.11 1.49 8.08 -51.93 -0.42 1.07 16 5 C -0.21 -2.69 9.88 -26.73 -0.26 -2.96 16 6 C 0.03 0.53 6.03 -67.71 -0.41 0.12 16 7 H 0.10 1.58 7.90 -51.93 -0.41 1.17 16 8 N -0.66 -12.42 6.78 -106.73 -0.72 -13.15 16 9 C 0.07 1.46 5.48 -3.83 -0.02 1.44 16 10 C 0.02 0.64 5.23 -27.88 -0.15 0.50 16 11 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 12 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -27.25 13.29 55.43 0.74 -26.52 16 15 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 20 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 21 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 23 H 0.06 0.61 7.88 -51.92 -0.41 0.20 16 24 H 0.09 1.02 8.03 -51.93 -0.42 0.60 16 25 H 0.09 1.16 8.09 -51.93 -0.42 0.74 16 26 H 0.34 6.11 8.52 -39.29 -0.33 5.78 16 27 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 LS Contribution 263.53 15.07 3.97 3.97 Total: -1.00 -29.89 263.53 -7.93 -37.82 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -5.33 Total: 0.46 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: -1.56 Total: -19.43 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.01 Total: -39.66 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.89 -7.93 -37.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234098227.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.056 kcal (2) G-P(sol) polarization free energy of solvation -29.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds