Wall clock time and date at job start Mon Mar 30 2020 02:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47033 * 2 1 4 4 H 1.09001 * 115.56398 * 330.68287 * 3 2 1 5 5 C 1.53002 * 117.49743 * 116.37607 * 3 2 1 6 6 C 1.52998 * 60.00103 * 107.48729 * 5 3 2 7 7 H 1.09001 * 117.49945 * 252.48790 * 6 5 3 8 8 N 1.46903 * 117.50130 * 107.48679 * 6 5 3 9 9 C 1.46896 * 111.00106 * 136.38926 * 8 6 5 10 10 C 1.52996 * 109.47256 * 180.02562 * 9 8 6 11 11 C 1.50702 * 109.47159 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48504 * 109.47196 * 60.00645 * 15 13 11 17 17 H 1.48504 * 109.46887 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47679 * 300.00280 * 15 13 11 19 19 H 1.09008 * 109.46808 * 60.00195 * 1 2 3 20 20 H 1.09001 * 109.47335 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47682 * 300.00360 * 1 2 3 22 22 H 1.08996 * 109.47337 * 239.99343 * 2 1 3 23 23 H 1.09008 * 109.46808 * 119.99805 * 2 1 3 24 24 H 1.09001 * 117.50185 * 359.97438 * 5 3 2 25 25 H 1.09001 * 117.50038 * 214.97197 * 5 3 2 26 26 H 1.00900 * 110.99721 * 12.44227 * 8 6 5 27 27 H 1.09004 * 109.46774 * 60.00282 * 9 8 6 28 28 H 1.09000 * 109.47723 * 300.00671 * 9 8 6 29 29 H 1.09004 * 109.47066 * 60.00378 * 10 9 8 30 30 H 1.08994 * 109.47405 * 300.00209 * 10 9 8 31 31 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3884 2.1717 -0.4815 5 6 2.8439 1.9075 1.2159 6 6 3.5501 1.6578 -0.1182 7 1 4.1806 0.7721 -0.1958 8 7 4.0109 2.8316 -0.8719 9 6 5.3629 2.6174 -1.4049 10 6 5.8076 3.8585 -2.1813 11 6 7.1944 3.6385 -2.7287 12 1 7.7071 2.7064 -2.5419 13 6 7.8061 4.6247 -3.4732 14 7 7.1816 5.7594 -3.7010 15 14 9.5219 4.3489 -4.1582 16 1 9.5104 3.1714 -5.0631 17 1 9.9516 5.5517 -4.9158 18 1 10.4681 4.1046 -3.0400 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 1.8933 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 3.0091 1.1860 2.0160 25 1 2.7213 2.9428 1.5344 26 1 3.9744 3.6639 -0.3027 27 1 5.3584 1.7542 -2.0706 28 1 6.0540 2.4374 -0.5815 29 1 5.8122 4.7213 -1.5152 30 1 5.1167 4.0388 -3.0048 31 1 7.6121 6.4534 -4.2245 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234098227.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:27 Heat of formation + Delta-G solvation = -19.633424 kcal Electronic energy + Delta-G solvation = -10626.231970 eV Core-core repulsion = 8713.568825 eV Total energy + Delta-G solvation = -1912.663146 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.32749 -36.33948 -34.60269 -32.62416 -30.22255 -26.11127 -24.60748 -22.54019 -22.30109 -21.14557 -18.53254 -16.76515 -16.41396 -16.28617 -15.54736 -15.20388 -14.56071 -14.21488 -13.58927 -13.34706 -13.14014 -12.92188 -12.83662 -12.52803 -12.23689 -12.06602 -11.86879 -11.54517 -11.36081 -11.29913 -10.69897 -10.56452 -9.06336 -8.21134 -6.33278 1.40498 1.44148 1.52159 2.40295 2.87455 3.12246 3.23017 3.93937 4.06661 4.09461 4.34453 4.46251 4.53121 4.57995 4.68019 4.84714 4.90026 4.98379 5.02864 5.18221 5.28328 5.32390 5.43083 5.53933 5.64506 5.77718 6.13578 6.27613 6.49088 6.83383 7.36169 8.91054 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.094481 B = 0.006154 C = 0.006098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 296.285156 B = 4549.156972 C = 4590.720255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 C -0.139 4.139 4 H 0.094 0.906 5 C -0.188 4.188 6 C 0.005 3.995 7 H 0.105 0.895 8 N -0.670 5.670 9 C 0.087 3.913 10 C 0.030 3.970 11 C -0.547 4.547 12 H 0.061 0.939 13 C 0.001 3.999 14 N -0.933 5.933 15 Si 0.970 3.030 16 H -0.266 1.266 17 H -0.282 1.282 18 H -0.266 1.266 19 H 0.049 0.951 20 H 0.065 0.935 21 H 0.058 0.942 22 H 0.060 0.940 23 H 0.072 0.928 24 H 0.110 0.890 25 H 0.093 0.907 26 H 0.339 0.661 27 H 0.058 0.942 28 H 0.022 0.978 29 H -0.008 1.008 30 H -0.007 1.007 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.736 -9.948 8.515 15.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 C -0.159 4.159 4 H 0.113 0.887 5 C -0.227 4.227 6 C -0.106 4.106 7 H 0.123 0.877 8 N -0.300 5.300 9 C -0.042 4.042 10 C -0.007 4.007 11 C -0.586 4.586 12 H 0.080 0.920 13 C -0.197 4.197 14 N -0.572 5.572 15 Si 0.793 3.207 16 H -0.191 1.191 17 H -0.207 1.207 18 H -0.190 1.190 19 H 0.068 0.932 20 H 0.084 0.916 21 H 0.077 0.923 22 H 0.078 0.922 23 H 0.090 0.910 24 H 0.128 0.872 25 H 0.112 0.888 26 H 0.158 0.842 27 H 0.076 0.924 28 H 0.040 0.960 29 H 0.010 0.990 30 H 0.012 0.988 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.018 -9.965 7.835 15.557 hybrid contribution 1.311 0.491 0.226 1.418 sum -7.707 -9.474 8.061 14.633 Atomic orbital electron populations 1.21720 0.94573 1.02133 1.01851 1.21111 0.96713 0.92941 1.02056 1.22676 0.93275 0.98725 1.01204 0.88737 1.23631 1.04554 1.02815 0.91665 1.22638 0.95656 0.95131 0.97139 0.87721 1.60250 1.25641 1.04490 1.39625 1.21808 0.86843 0.98854 0.96697 1.18936 0.94826 0.92734 0.94224 1.21580 1.01797 1.01770 1.33426 0.92033 1.26004 1.02651 0.94699 0.96378 1.70108 1.39898 1.06753 1.40474 0.85438 0.78789 0.77776 0.78649 1.19121 1.20719 1.19034 0.93182 0.91590 0.92336 0.92174 0.90970 0.87183 0.88813 0.84220 0.92381 0.95967 0.98977 0.98842 0.92677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.87 71.98 0.71 -1.78 16 2 C -0.09 -1.83 6.22 30.59 0.19 -1.64 16 3 C -0.14 -3.49 5.66 -10.79 -0.06 -3.55 16 4 H 0.09 2.58 8.08 -2.39 -0.02 2.57 16 5 C -0.19 -4.44 9.88 30.59 0.30 -4.14 16 6 C 0.00 0.15 6.03 44.92 0.27 0.42 16 7 H 0.10 3.08 7.90 -2.39 -0.02 3.06 16 8 N -0.67 -25.28 6.78 -491.57 -3.33 -28.62 16 9 C 0.09 3.81 5.48 86.30 0.47 4.28 16 10 C 0.03 1.67 5.23 29.85 0.16 1.82 16 11 C -0.55 -31.89 9.11 25.60 0.23 -31.66 16 12 H 0.06 3.41 7.74 -2.91 -0.02 3.38 16 13 C 0.00 0.04 5.46 84.66 0.46 0.50 16 14 N -0.93 -57.79 13.29 21.45 0.28 -57.50 16 15 Si 0.97 44.64 29.54 68.60 2.03 46.66 16 16 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 17 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 18 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 19 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 20 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 21 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 22 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.07 1.27 7.88 -2.38 -0.02 1.26 16 24 H 0.11 2.16 8.03 -2.39 -0.02 2.14 16 25 H 0.09 2.19 8.09 -2.39 -0.02 2.17 16 26 H 0.34 12.38 8.52 -89.69 -0.76 11.62 16 27 H 0.06 2.54 8.14 -2.38 -0.02 2.53 16 28 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 29 H -0.01 -0.48 8.14 -2.38 -0.02 -0.49 16 30 H -0.01 -0.42 8.14 -2.39 -0.02 -0.43 16 31 H 0.26 15.36 8.31 -92.70 -0.77 14.59 16 Total: -1.00 -63.89 263.53 2.03 -61.86 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 0.31 Total: 13.33 kcal Atomic # 6 Polarization: -38.47 SS G_CDS: 2.74 Total: -35.74 kcal Atomic # 7 Polarization: -83.07 SS G_CDS: -3.05 Total: -86.12 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -63.89 2.03 -61.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234098227.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.225 kcal (2) G-P(sol) polarization free energy of solvation -63.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds