Wall clock time and date at job start Mon Mar 30 2020 01:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46628 * 2 1 4 4 C 1.50698 * 109.52380 * 295.28187 * 3 2 1 5 5 H 1.07994 * 120.00148 * 93.20451 * 4 3 2 6 6 C 1.37883 * 119.99927 * 273.20592 * 4 3 2 7 7 N 1.31510 * 120.00013 * 194.59980 * 6 4 3 8 8 Si 1.86799 * 119.99775 * 14.59891 * 6 4 3 9 9 H 1.48503 * 109.47169 * 263.69785 * 8 6 4 10 10 H 1.48494 * 109.47566 * 23.70164 * 8 6 4 11 11 H 1.48501 * 109.47035 * 143.70050 * 8 6 4 12 12 C 1.53119 * 109.52565 * 55.41226 * 3 2 1 13 13 C 1.53167 * 109.20773 * 177.56374 * 12 3 2 14 14 N 1.46852 * 109.55458 * 300.85200 * 13 12 3 15 15 C 1.46857 * 111.19490 * 61.74672 * 14 13 12 16 16 C 1.53037 * 109.52146 * 298.25699 * 15 14 13 17 17 H 1.08999 * 109.47595 * 304.58815 * 1 2 3 18 18 H 1.09002 * 109.46937 * 64.58901 * 1 2 3 19 19 H 1.09005 * 109.46675 * 184.58435 * 1 2 3 20 20 H 1.08994 * 109.47427 * 239.99587 * 2 1 3 21 21 H 1.09001 * 109.46468 * 119.99508 * 2 1 3 22 22 H 0.97002 * 120.00355 * 179.97438 * 7 6 4 23 23 H 1.09008 * 109.49931 * 297.56024 * 12 3 2 24 24 H 1.08996 * 109.50591 * 57.67562 * 12 3 2 25 25 H 1.08998 * 109.44689 * 180.83580 * 13 12 3 26 26 H 1.09001 * 109.44389 * 60.87480 * 13 12 3 27 27 H 1.00898 * 111.00415 * 185.84171 * 14 13 12 28 28 H 1.08994 * 109.46230 * 178.24194 * 15 14 13 29 29 H 1.09003 * 109.45028 * 58.26779 * 15 14 13 30 30 H 1.08998 * 109.50475 * 299.23669 * 16 15 14 31 31 H 1.08995 * 109.50162 * 179.11901 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6358 2.1195 -1.2843 5 1 0.7184 2.6875 -1.3299 6 6 2.4374 2.0138 -2.4012 7 7 2.2509 2.8201 -3.4232 8 14 3.7885 0.7253 -2.4625 9 1 5.0793 1.3421 -2.0643 10 1 3.4598 -0.3815 -1.5287 11 1 3.9005 0.1908 -3.8435 12 6 1.4381 2.1981 1.1881 13 6 2.0001 3.6226 1.2163 14 7 3.4630 3.5716 1.3346 15 6 4.0655 2.8911 0.1810 16 6 3.5663 1.4457 0.1219 17 1 -0.3634 0.5834 0.8460 18 1 -0.3633 0.4410 -0.9283 19 1 -0.3633 -1.0245 0.0821 20 1 1.8934 -0.5139 -0.8899 21 1 1.8933 -0.5138 0.8901 22 1 2.8150 2.7460 -4.2088 23 1 0.3536 2.2351 1.0841 24 1 1.6981 1.6860 2.1145 25 1 1.5855 4.1595 2.0695 26 1 1.7280 4.1384 0.2955 27 1 3.8489 4.4966 1.4508 28 1 5.1507 2.8967 0.2822 29 1 3.7834 3.4106 -0.7348 30 1 3.8598 0.9218 1.0315 31 1 4.0014 0.9455 -0.7433 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238222767.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:53 Heat of formation + Delta-G solvation = -10.447965 kcal Electronic energy + Delta-G solvation = -12253.578530 eV Core-core repulsion = 10341.313696 eV Total energy + Delta-G solvation = -1912.264834 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.26236 -35.66168 -34.06313 -31.89309 -30.54568 -27.15650 -25.08299 -23.98564 -21.79677 -20.40801 -17.98551 -17.71860 -16.64454 -15.42329 -15.36062 -15.06587 -14.76829 -14.33476 -14.14424 -13.67501 -13.22113 -12.88748 -12.39191 -12.30630 -12.17539 -11.91937 -11.56569 -11.50958 -11.00626 -10.71590 -10.44765 -10.15155 -9.26821 -8.25616 -6.17679 1.28564 1.37456 1.46369 2.34384 3.11697 3.43253 4.05191 4.20715 4.26261 4.48565 4.57753 4.61827 4.71236 4.77643 4.92141 4.92365 5.06876 5.15102 5.23863 5.27688 5.34047 5.44002 5.49621 5.68833 5.77803 5.88896 6.16984 6.42734 6.66230 6.83327 7.43119 8.91673 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.032902 B = 0.024699 C = 0.019453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.814335 B = 1133.370744 C = 1438.994807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.120 4.120 3 C 0.034 3.966 4 C -0.479 4.479 5 H 0.031 0.969 6 C 0.019 3.981 7 N -0.948 5.948 8 Si 0.942 3.058 9 H -0.284 1.284 10 H -0.231 1.231 11 H -0.324 1.324 12 C -0.089 4.089 13 C 0.066 3.934 14 N -0.678 5.678 15 C 0.065 3.935 16 C -0.116 4.116 17 H 0.059 0.941 18 H 0.034 0.966 19 H 0.055 0.945 20 H 0.040 0.960 21 H 0.055 0.945 22 H 0.259 0.741 23 H 0.059 0.941 24 H 0.063 0.937 25 H 0.083 0.917 26 H 0.009 0.991 27 H 0.344 0.656 28 H 0.068 0.932 29 H 0.015 0.985 30 H 0.072 0.928 31 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.704 -2.803 9.367 9.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.158 4.158 3 C 0.033 3.967 4 C -0.517 4.517 5 H 0.049 0.951 6 C -0.177 4.177 7 N -0.589 5.589 8 Si 0.776 3.224 9 H -0.212 1.212 10 H -0.157 1.157 11 H -0.255 1.255 12 C -0.127 4.127 13 C -0.063 4.063 14 N -0.309 5.309 15 C -0.065 4.065 16 C -0.153 4.153 17 H 0.078 0.922 18 H 0.053 0.947 19 H 0.074 0.926 20 H 0.059 0.941 21 H 0.073 0.927 22 H 0.068 0.932 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.101 0.899 26 H 0.028 0.972 27 H 0.161 0.839 28 H 0.087 0.913 29 H 0.033 0.967 30 H 0.091 0.909 31 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 1.734 -3.311 9.607 10.308 hybrid contribution 0.494 0.452 -1.630 1.762 sum 2.228 -2.859 7.976 8.762 Atomic orbital electron populations 1.21625 0.95656 1.00513 1.01209 1.21874 0.96770 0.97483 0.99643 1.18654 0.91173 0.93021 0.93886 1.20956 1.06295 1.29718 0.94691 0.95112 1.25687 0.99541 0.96832 0.95635 1.70099 1.42268 1.38578 1.07995 0.86132 0.79975 0.82374 0.73966 1.21203 1.15663 1.25461 1.21515 0.98983 0.94929 0.97243 1.21840 0.87803 0.97737 0.98921 1.60409 1.05563 1.23785 1.41123 1.21751 0.97529 0.95284 0.91885 1.21983 0.98215 0.96039 0.99065 0.92210 0.94694 0.92564 0.94147 0.92664 0.93208 0.92272 0.91796 0.89874 0.97243 0.83897 0.91316 0.96665 0.90946 0.95213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.82 9.32 71.98 0.67 -4.15 16 2 C -0.12 -4.78 4.66 30.60 0.14 -4.64 16 3 C 0.03 1.46 0.28 -52.85 -0.01 1.45 16 4 C -0.48 -25.81 5.76 25.60 0.15 -25.67 16 5 H 0.03 1.87 8.06 -2.91 -0.02 1.85 16 6 C 0.02 1.09 4.41 84.66 0.37 1.47 16 7 N -0.95 -58.92 13.96 21.45 0.30 -58.62 16 8 Si 0.94 45.76 22.78 68.60 1.56 47.32 16 9 H -0.28 -13.36 7.04 99.48 0.70 -12.66 16 10 H -0.23 -10.19 4.72 99.48 0.47 -9.72 16 11 H -0.32 -16.29 7.11 99.48 0.71 -15.58 16 12 C -0.09 -3.39 4.33 30.69 0.13 -3.26 16 13 C 0.07 2.47 6.35 86.37 0.55 3.01 16 14 N -0.68 -24.12 6.85 -513.74 -3.52 -27.64 16 15 C 0.07 2.67 5.92 86.32 0.51 3.19 16 16 C -0.12 -4.92 4.07 30.65 0.12 -4.79 16 17 H 0.06 1.98 6.15 -2.39 -0.01 1.97 16 18 H 0.03 1.44 7.52 -2.39 -0.02 1.42 16 19 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 20 H 0.04 1.73 5.20 -2.39 -0.01 1.72 16 21 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 22 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 23 H 0.06 2.22 6.40 -2.38 -0.02 2.21 16 24 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 25 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 26 H 0.01 0.41 7.31 -2.39 -0.02 0.40 16 27 H 0.34 10.48 8.90 -89.70 -0.80 9.68 16 28 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 29 H 0.02 0.74 6.47 -2.39 -0.02 0.73 16 30 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 31 H 0.03 1.35 1.38 -2.39 0.00 1.35 16 Total: -1.00 -61.90 222.09 1.05 -60.84 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 0.07 Total: 11.48 kcal Atomic # 6 Polarization: -36.03 SS G_CDS: 2.64 Total: -33.39 kcal Atomic # 7 Polarization: -83.04 SS G_CDS: -3.22 Total: -86.26 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.56 Total: 47.32 kcal Total: -61.90 1.05 -60.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238222767.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.396 kcal (2) G-P(sol) polarization free energy of solvation -61.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds