Wall clock time and date at job start Mon Mar 30 2020 02:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46938 * 2 1 4 4 H 1.08999 * 109.50616 * 304.91867 * 3 2 1 5 5 C 1.53042 * 109.50602 * 65.00260 * 3 2 1 6 6 N 1.46843 * 109.52278 * 179.15660 * 5 3 2 7 7 C 1.46847 * 111.20124 * 298.25596 * 6 5 3 8 8 C 1.53034 * 109.51345 * 61.74903 * 7 6 5 9 9 C 1.53123 * 109.27992 * 300.80438 * 8 7 6 10 10 H 1.08998 * 109.52498 * 177.57076 * 9 8 7 11 11 C 1.50702 * 109.58353 * 297.73637 * 9 8 7 12 12 H 1.07998 * 119.99937 * 119.70656 * 11 9 8 13 13 C 1.37868 * 120.00088 * 299.70515 * 11 9 8 14 14 N 1.31519 * 120.00014 * 0.02562 * 13 11 9 15 15 Si 1.86802 * 120.00170 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47029 * 90.00247 * 15 13 11 17 17 H 1.48498 * 109.47329 * 209.99881 * 15 13 11 18 18 H 1.48498 * 109.47133 * 330.00623 * 15 13 11 19 19 H 1.09005 * 109.47106 * 300.00305 * 1 2 3 20 20 H 1.08999 * 109.47181 * 59.99975 * 1 2 3 21 21 H 1.08998 * 109.47435 * 180.02562 * 1 2 3 22 22 H 1.08993 * 109.47063 * 240.00111 * 2 1 3 23 23 H 1.09000 * 109.46727 * 119.99749 * 2 1 3 24 24 H 1.08993 * 109.46299 * 59.13996 * 5 3 2 25 25 H 1.09000 * 109.45057 * 299.16766 * 5 3 2 26 26 H 1.00902 * 110.99874 * 174.15812 * 6 5 3 27 27 H 1.09002 * 109.46481 * 181.76055 * 7 6 5 28 28 H 1.08994 * 109.46283 * 301.73908 * 7 6 5 29 29 H 1.08997 * 109.50952 * 60.75924 * 8 7 6 30 30 H 1.08998 * 109.50459 * 180.87821 * 8 7 6 31 31 H 0.97002 * 119.99539 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6068 1.9816 -0.8425 5 6 1.6355 2.1275 1.3075 6 7 2.1421 3.5057 1.3165 7 6 3.6088 3.5329 1.2486 8 6 4.0719 2.8900 -0.0606 9 6 3.5664 1.4459 -0.1213 10 1 3.8573 0.9977 -1.0714 11 6 4.1635 0.6536 1.0131 12 1 3.5197 0.1932 1.7478 13 6 5.5317 0.5165 1.1129 14 7 6.3159 1.0776 0.2184 15 14 6.2720 -0.4650 2.5194 16 1 6.4087 -1.8867 2.1128 17 1 7.6099 0.0843 2.8560 18 1 5.3858 -0.3730 3.7074 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 1.8933 -0.5138 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 2.0576 1.5798 2.1500 25 1 0.5487 2.1394 1.3899 26 1 1.8082 4.0084 2.1252 27 1 3.9552 4.5656 1.2886 28 1 4.0217 2.9785 2.0913 29 1 3.6706 3.4519 -0.9040 30 1 5.1610 2.8962 -0.1038 31 1 7.2785 0.9814 0.2890 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238313331.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:55 Heat of formation + Delta-G solvation = -22.144190 kcal Electronic energy + Delta-G solvation = -11904.704995 eV Core-core repulsion = 9991.932975 eV Total energy + Delta-G solvation = -1912.772021 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.08520 -33.40570 -32.87006 -29.97980 -28.19496 -25.03603 -23.18040 -22.05014 -19.86903 -18.52519 -15.64162 -15.53992 -14.60375 -14.12222 -13.27085 -13.11790 -12.95137 -12.44446 -12.16439 -11.69931 -11.16963 -10.96685 -10.89719 -10.70225 -10.52429 -10.14295 -9.89433 -9.75304 -9.15898 -8.78203 -8.62447 -8.25910 -7.49947 -5.94257 -3.98279 3.29899 3.37280 3.39377 4.45547 5.13473 5.35517 5.69897 5.77156 5.89059 6.13222 6.19504 6.32385 6.47020 6.51296 6.54335 6.71325 6.80676 6.84394 7.01419 7.16299 7.27455 7.32507 7.56660 7.71700 7.81625 7.99942 8.24199 8.28681 8.53180 9.04038 9.64514 11.11634 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.037187 B = 0.016889 C = 0.014065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.776697 B = 1657.502174 C = 1990.307600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.109 4.109 3 C -0.074 4.074 4 H 0.047 0.953 5 C 0.074 3.926 6 N -0.695 5.695 7 C 0.071 3.929 8 C -0.107 4.107 9 C 0.049 3.951 10 H 0.024 0.976 11 C -0.500 4.500 12 H 0.054 0.946 13 C 0.060 3.940 14 N -0.891 5.891 15 Si 0.883 3.117 16 H -0.282 1.282 17 H -0.288 1.288 18 H -0.277 1.277 19 H 0.048 0.952 20 H 0.045 0.955 21 H 0.042 0.958 22 H 0.055 0.945 23 H 0.066 0.934 24 H 0.034 0.966 25 H 0.049 0.951 26 H 0.321 0.679 27 H 0.043 0.957 28 H 0.037 0.963 29 H 0.021 0.979 30 H 0.092 0.908 31 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.726 1.038 1.686 7.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.147 4.147 3 C -0.093 4.093 4 H 0.066 0.934 5 C -0.055 4.055 6 N -0.325 5.325 7 C -0.057 4.057 8 C -0.145 4.145 9 C 0.030 3.970 10 H 0.042 0.958 11 C -0.538 4.538 12 H 0.073 0.927 13 C -0.140 4.140 14 N -0.530 5.530 15 Si 0.711 3.289 16 H -0.208 1.208 17 H -0.214 1.214 18 H -0.202 1.202 19 H 0.068 0.932 20 H 0.065 0.935 21 H 0.061 0.939 22 H 0.074 0.926 23 H 0.085 0.915 24 H 0.052 0.948 25 H 0.067 0.933 26 H 0.136 0.864 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.040 0.960 30 H 0.110 0.890 31 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.599 1.138 0.964 6.765 hybrid contribution 0.768 -0.821 1.717 2.052 sum -5.830 0.317 2.681 6.425 Atomic orbital electron populations 1.21878 0.97896 1.00149 1.00981 1.21455 0.93112 0.97865 1.02290 1.21162 0.99119 0.93403 0.95590 0.93422 1.21863 0.96780 0.88472 0.98414 1.60424 1.11246 1.15397 1.45389 1.21824 0.85980 0.97807 1.00125 1.21563 1.03018 0.96768 0.93142 1.18745 0.88391 0.92738 0.97106 0.95798 1.21183 0.91140 1.31128 1.10345 0.92738 1.24945 0.97410 0.95784 0.95905 1.69876 1.03775 1.44411 1.34964 0.86743 0.78617 0.80509 0.83003 1.20788 1.21366 1.20194 0.93249 0.93536 0.93923 0.92649 0.91522 0.94818 0.93312 0.86357 0.93882 0.94456 0.96000 0.88977 0.93182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.67 37.16 0.36 -2.00 16 2 C -0.11 -2.09 5.02 -26.73 -0.13 -2.23 16 3 C -0.07 -1.57 2.11 -90.53 -0.19 -1.76 16 4 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 5 C 0.07 1.46 5.36 -3.83 -0.02 1.44 16 6 N -0.70 -13.63 6.84 -113.82 -0.78 -14.41 16 7 C 0.07 1.55 6.34 -3.84 -0.02 1.53 16 8 C -0.11 -2.59 5.41 -26.65 -0.14 -2.74 16 9 C 0.05 1.22 2.16 -91.64 -0.20 1.02 16 10 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 11 C -0.50 -13.26 6.07 -34.44 -0.21 -13.47 16 12 H 0.05 1.44 5.69 -52.49 -0.30 1.15 16 13 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 14 N -0.89 -25.31 11.33 55.43 0.63 -24.68 16 15 Si 0.88 21.22 29.54 -169.99 -5.02 16.19 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H 0.05 0.74 6.59 -51.93 -0.34 0.39 16 20 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 21 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 23 H 0.07 1.36 6.66 -51.93 -0.35 1.01 16 24 H 0.03 0.72 6.78 -51.93 -0.35 0.37 16 25 H 0.05 0.86 6.61 -51.93 -0.34 0.51 16 26 H 0.32 5.41 8.90 -39.29 -0.35 5.06 16 27 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.04 0.89 7.31 -51.93 -0.38 0.51 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.09 2.47 6.05 -51.93 -0.31 2.16 16 31 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 236.38 15.07 3.56 3.56 Total: -1.00 -27.66 236.38 -7.09 -34.75 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -4.82 Total: 1.25 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: -0.66 Total: -16.67 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: -0.15 Total: -39.09 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -27.66 -7.09 -34.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238313331.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.603 kcal (2) G-P(sol) polarization free energy of solvation -27.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds