Wall clock time and date at job start Mon Mar 30 2020 02:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46938 * 2 1 4 4 H 1.08999 * 109.50616 * 304.91867 * 3 2 1 5 5 C 1.53042 * 109.50602 * 65.00260 * 3 2 1 6 6 N 1.46843 * 109.52278 * 179.15660 * 5 3 2 7 7 C 1.46847 * 111.20124 * 298.25596 * 6 5 3 8 8 C 1.53034 * 109.51345 * 61.74903 * 7 6 5 9 9 C 1.53123 * 109.27992 * 300.80438 * 8 7 6 10 10 H 1.08998 * 109.52498 * 177.57076 * 9 8 7 11 11 C 1.50702 * 109.58353 * 297.73637 * 9 8 7 12 12 H 1.07998 * 119.99937 * 119.70656 * 11 9 8 13 13 C 1.37868 * 120.00088 * 299.70515 * 11 9 8 14 14 N 1.31519 * 120.00014 * 0.02562 * 13 11 9 15 15 Si 1.86802 * 120.00170 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47029 * 90.00247 * 15 13 11 17 17 H 1.48498 * 109.47329 * 209.99881 * 15 13 11 18 18 H 1.48498 * 109.47133 * 330.00623 * 15 13 11 19 19 H 1.09005 * 109.47106 * 300.00305 * 1 2 3 20 20 H 1.08999 * 109.47181 * 59.99975 * 1 2 3 21 21 H 1.08998 * 109.47435 * 180.02562 * 1 2 3 22 22 H 1.08993 * 109.47063 * 240.00111 * 2 1 3 23 23 H 1.09000 * 109.46727 * 119.99749 * 2 1 3 24 24 H 1.08993 * 109.46299 * 59.13996 * 5 3 2 25 25 H 1.09000 * 109.45057 * 299.16766 * 5 3 2 26 26 H 1.00902 * 110.99874 * 174.15812 * 6 5 3 27 27 H 1.09002 * 109.46481 * 181.76055 * 7 6 5 28 28 H 1.08994 * 109.46283 * 301.73908 * 7 6 5 29 29 H 1.08997 * 109.50952 * 60.75924 * 8 7 6 30 30 H 1.08998 * 109.50459 * 180.87821 * 8 7 6 31 31 H 0.97002 * 119.99539 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6068 1.9816 -0.8425 5 6 1.6355 2.1275 1.3075 6 7 2.1421 3.5057 1.3165 7 6 3.6088 3.5329 1.2486 8 6 4.0719 2.8900 -0.0606 9 6 3.5664 1.4459 -0.1213 10 1 3.8573 0.9977 -1.0714 11 6 4.1635 0.6536 1.0131 12 1 3.5197 0.1932 1.7478 13 6 5.5317 0.5165 1.1129 14 7 6.3159 1.0776 0.2184 15 14 6.2720 -0.4650 2.5194 16 1 6.4087 -1.8867 2.1128 17 1 7.6099 0.0843 2.8560 18 1 5.3858 -0.3730 3.7074 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 1.8933 -0.5138 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 2.0576 1.5798 2.1500 25 1 0.5487 2.1394 1.3899 26 1 1.8082 4.0084 2.1252 27 1 3.9552 4.5656 1.2886 28 1 4.0217 2.9785 2.0913 29 1 3.6706 3.4519 -0.9040 30 1 5.1610 2.8962 -0.1038 31 1 7.2785 0.9814 0.2890 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238313331.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:55 Heat of formation + Delta-G solvation = -40.069579 kcal Electronic energy + Delta-G solvation = -11905.482299 eV Core-core repulsion = 9991.932975 eV Total energy + Delta-G solvation = -1913.549324 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.84227 -34.99034 -34.84989 -31.88639 -29.79347 -27.06475 -24.74012 -23.85268 -21.54629 -20.42706 -17.59967 -17.29133 -16.53625 -15.76868 -15.09911 -14.80623 -14.47343 -14.27352 -13.69935 -13.51135 -12.89818 -12.84744 -12.58905 -12.45741 -12.26066 -11.90623 -11.72236 -11.48059 -10.96956 -10.69842 -10.48783 -10.30336 -9.17370 -8.03809 -6.13521 1.38397 1.40349 1.48375 2.43954 3.23883 3.54832 4.17074 4.29491 4.38223 4.59118 4.60835 4.71335 4.81031 4.90055 4.95712 5.14620 5.21244 5.26103 5.34713 5.44322 5.51873 5.59381 5.67428 5.70343 5.88313 6.03932 6.37547 6.45842 6.78252 6.96224 7.51941 9.01408 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.037187 B = 0.016889 C = 0.014065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.776697 B = 1657.502174 C = 1990.307600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.106 4.106 3 C -0.072 4.072 4 H 0.048 0.952 5 C 0.079 3.921 6 N -0.690 5.690 7 C 0.081 3.919 8 C -0.105 4.105 9 C 0.044 3.956 10 H -0.016 1.016 11 C -0.500 4.500 12 H 0.054 0.946 13 C 0.011 3.989 14 N -0.920 5.920 15 Si 0.942 3.058 16 H -0.279 1.279 17 H -0.287 1.287 18 H -0.270 1.270 19 H 0.060 0.940 20 H 0.055 0.945 21 H 0.060 0.940 22 H 0.042 0.958 23 H 0.050 0.950 24 H 0.017 0.983 25 H 0.082 0.918 26 H 0.343 0.657 27 H 0.063 0.937 28 H 0.014 0.986 29 H 0.024 0.976 30 H 0.062 0.938 31 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.361 1.133 2.759 8.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.144 4.144 3 C -0.090 4.090 4 H 0.067 0.933 5 C -0.050 4.050 6 N -0.321 5.321 7 C -0.048 4.048 8 C -0.144 4.144 9 C 0.025 3.975 10 H 0.002 0.998 11 C -0.538 4.538 12 H 0.072 0.928 13 C -0.187 4.187 14 N -0.561 5.561 15 Si 0.769 3.231 16 H -0.205 1.205 17 H -0.213 1.213 18 H -0.194 1.194 19 H 0.079 0.921 20 H 0.074 0.926 21 H 0.079 0.921 22 H 0.061 0.939 23 H 0.069 0.931 24 H 0.035 0.965 25 H 0.100 0.900 26 H 0.161 0.839 27 H 0.081 0.919 28 H 0.033 0.967 29 H 0.043 0.957 30 H 0.080 0.920 31 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.255 1.237 2.050 8.596 hybrid contribution 1.271 -0.840 1.328 2.020 sum -6.985 0.397 3.378 7.769 Atomic orbital electron populations 1.21786 0.94458 1.01760 1.01957 1.21384 0.96085 0.96080 1.00899 1.21102 0.96170 0.95107 0.96660 0.93333 1.21831 0.98563 0.88079 0.96557 1.60353 1.09503 1.15514 1.46695 1.21615 0.87480 0.98251 0.97450 1.21449 1.01203 0.96812 0.94890 1.18741 0.91429 0.92647 0.94665 0.99767 1.21376 0.91252 1.30771 1.10402 0.92797 1.25654 0.98033 0.96892 0.98100 1.70021 1.03807 1.45694 1.36565 0.85802 0.77777 0.79102 0.80461 1.20480 1.21320 1.19448 0.92128 0.92602 0.92122 0.93942 0.93078 0.96473 0.89996 0.83945 0.91863 0.96721 0.95736 0.91983 0.93378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.98 9.67 71.98 0.70 -3.29 16 2 C -0.11 -3.96 5.02 30.59 0.15 -3.81 16 3 C -0.07 -2.96 2.11 -10.74 -0.02 -2.98 16 4 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 5 C 0.08 2.93 5.36 86.33 0.46 3.39 16 6 N -0.69 -25.28 6.84 -514.02 -3.52 -28.79 16 7 C 0.08 3.46 6.34 86.32 0.55 4.01 16 8 C -0.11 -5.17 5.41 30.65 0.17 -5.01 16 9 C 0.04 2.22 2.16 -11.46 -0.02 2.19 16 10 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 11 C -0.50 -26.80 6.07 25.60 0.16 -26.64 16 12 H 0.05 2.85 5.69 -2.91 -0.02 2.84 16 13 C 0.01 0.60 5.30 84.65 0.45 1.04 16 14 N -0.92 -53.58 11.33 21.44 0.24 -53.33 16 15 Si 0.94 43.76 29.54 68.60 2.03 45.78 16 16 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 17 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 18 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 19 H 0.06 1.56 6.59 -2.38 -0.02 1.55 16 20 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 21 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 22 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 23 H 0.05 2.04 6.66 -2.39 -0.02 2.02 16 24 H 0.02 0.70 6.78 -2.39 -0.02 0.68 16 25 H 0.08 2.55 6.61 -2.39 -0.02 2.53 16 26 H 0.34 10.37 8.90 -89.69 -0.80 9.57 16 27 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.01 0.68 7.31 -2.39 -0.02 0.67 16 29 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.06 3.43 6.05 -2.39 -0.01 3.41 16 31 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -59.13 236.38 1.64 -57.49 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: 0.30 Total: 9.95 kcal Atomic # 6 Polarization: -33.68 SS G_CDS: 2.58 Total: -31.09 kcal Atomic # 7 Polarization: -78.85 SS G_CDS: -3.28 Total: -82.13 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Total: -59.13 1.64 -57.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238313331.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.418 kcal (2) G-P(sol) polarization free energy of solvation -59.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds