Wall clock time and date at job start Mon Mar 30 2020 01:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48541 * 110.99805 * 2 1 4 4 C 1.54938 * 103.22605 * 200.28158 * 3 2 1 5 5 H 1.08997 * 110.72310 * 279.05350 * 4 3 2 6 6 C 1.50693 * 110.72474 * 155.94901 * 4 3 2 7 7 H 1.08002 * 120.00484 * 241.45411 * 6 4 3 8 8 C 1.37881 * 120.00127 * 61.45321 * 6 4 3 9 9 N 1.31518 * 119.99424 * 359.97438 * 8 6 4 10 10 Si 1.86799 * 120.00318 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47142 * 90.00145 * 10 8 6 12 12 H 1.48504 * 109.47058 * 209.99734 * 10 8 6 13 13 H 1.48500 * 109.47296 * 330.00147 * 10 8 6 14 14 C 1.54595 * 102.92210 * 37.41378 * 4 3 2 15 15 C 1.47902 * 110.99844 * 242.60590 * 2 1 3 16 16 C 1.53000 * 109.91609 * 265.19345 * 15 2 1 17 17 C 1.52999 * 109.92077 * 26.48952 * 15 2 1 18 18 H 1.09002 * 109.47401 * 59.87334 * 1 2 3 19 19 H 1.09001 * 109.46874 * 299.87347 * 1 2 3 20 20 H 1.09004 * 109.46970 * 179.87480 * 1 2 3 21 21 H 1.09005 * 110.66282 * 318.71281 * 3 2 1 22 22 H 1.08998 * 110.66710 * 81.84805 * 3 2 1 23 23 H 0.97000 * 119.99789 * 179.97438 * 9 8 6 24 24 H 1.09000 * 110.30970 * 96.95903 * 14 4 3 25 25 H 1.09001 * 110.30582 * 219.12738 * 14 4 3 26 26 H 1.08994 * 109.47260 * 61.45533 * 16 15 2 27 27 H 1.09001 * 109.47012 * 181.45618 * 16 15 2 28 28 H 1.09004 * 109.47141 * 301.45223 * 16 15 2 29 29 H 1.09006 * 109.46905 * 58.54345 * 17 15 2 30 30 H 1.08999 * 109.47549 * 178.54779 * 17 15 2 31 31 H 1.09002 * 109.47020 * 298.55202 * 17 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3868 0.0000 4 6 3.4491 1.2107 -0.5228 5 1 4.1115 0.8838 0.2786 6 6 3.9527 2.4902 -1.1395 7 1 4.2307 2.5140 -2.1828 8 6 4.0585 3.6306 -0.3717 9 7 3.7195 3.6017 0.8987 10 14 4.6833 5.2165 -1.1359 11 1 3.5376 5.9886 -1.6803 12 1 5.3778 6.0244 -0.1014 13 1 5.6313 4.8972 -2.2335 14 6 3.2982 0.1055 -1.5931 15 6 1.9990 -0.6353 -1.2260 16 6 2.2983 -2.1120 -0.9601 17 6 0.9839 -0.5019 -2.3629 18 1 -0.3634 0.5158 -0.8888 19 1 -0.3633 0.5119 0.8911 20 1 -0.3633 -1.0277 -0.0022 21 1 1.4236 2.0205 -0.6730 22 1 2.0041 1.7977 1.0095 23 1 3.7943 4.4039 1.4389 24 1 3.2135 0.5487 -2.5853 25 1 4.1470 -0.5773 -1.5541 26 1 1.3773 -2.6255 -0.6845 27 1 2.7124 -2.5666 -1.8601 28 1 3.0186 -2.1960 -0.1463 29 1 0.7745 0.5530 -2.5410 30 1 1.3922 -0.9494 -3.2690 31 1 0.0616 -1.0139 -2.0884 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259269158.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:16 Heat of formation + Delta-G solvation = -5.182774 kcal Electronic energy + Delta-G solvation = -11800.742259 eV Core-core repulsion = 9888.705740 eV Total energy + Delta-G solvation = -1912.036519 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.82144 -33.32804 -31.54224 -30.52475 -26.94121 -25.55455 -24.58429 -23.02124 -19.62134 -17.98899 -16.30697 -15.05216 -14.43587 -14.11576 -13.76841 -13.13986 -12.77038 -12.15707 -12.07452 -11.94352 -11.24268 -11.04829 -10.99029 -10.90471 -10.59798 -10.48636 -10.36942 -9.95485 -9.54069 -9.05789 -8.86302 -8.38166 -7.48751 -6.00570 -4.03779 3.30645 3.37600 3.40792 4.43527 4.88985 5.31468 5.43819 5.56913 5.77934 5.85076 6.01635 6.08348 6.20631 6.22847 6.34896 6.39623 6.47629 6.52643 6.58198 6.79224 7.01422 7.11282 7.23929 7.65932 7.75604 7.88746 8.02297 8.12235 8.48164 8.99514 9.60359 11.08937 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.060874 B = 0.012380 C = 0.011675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.858255 B = 2261.087699 C = 2397.612419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.523 5.523 3 C 0.059 3.941 4 C 0.051 3.949 5 H 0.035 0.965 6 C -0.515 4.515 7 H 0.056 0.944 8 C 0.063 3.937 9 N -0.888 5.888 10 Si 0.890 3.110 11 H -0.282 1.282 12 H -0.286 1.286 13 H -0.274 1.274 14 C -0.116 4.116 15 C 0.083 3.917 16 C -0.123 4.123 17 C -0.162 4.162 18 H 0.025 0.975 19 H 0.057 0.943 20 H 0.053 0.947 21 H 0.026 0.974 22 H 0.083 0.917 23 H 0.260 0.740 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.043 0.957 27 H 0.047 0.953 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.469 -6.356 -3.467 8.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.247 5.247 3 C -0.068 4.068 4 C 0.032 3.968 5 H 0.053 0.947 6 C -0.553 4.553 7 H 0.074 0.926 8 C -0.139 4.139 9 N -0.527 5.527 10 Si 0.718 3.282 11 H -0.208 1.208 12 H -0.212 1.212 13 H -0.199 1.199 14 C -0.154 4.154 15 C -0.007 4.007 16 C -0.181 4.181 17 C -0.221 4.221 18 H 0.044 0.956 19 H 0.076 0.924 20 H 0.071 0.929 21 H 0.044 0.956 22 H 0.102 0.898 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.324 -6.524 -2.825 8.322 hybrid contribution -0.104 1.429 -1.068 1.787 sum -4.429 -5.095 -3.893 7.793 Atomic orbital electron populations 1.22460 0.90450 1.00178 1.00067 1.64932 1.06135 1.18621 1.35060 1.23303 0.97043 0.85020 1.01455 1.19516 0.92288 0.92120 0.92843 0.94689 1.21167 1.43621 0.94315 0.96243 0.92602 1.25003 0.95252 0.98854 0.94819 1.69961 1.48080 1.28634 1.05979 0.86625 0.78982 0.83586 0.78999 1.20783 1.21203 1.19913 1.22622 0.94196 0.98008 1.00590 1.21796 0.95272 0.94748 0.88841 1.21711 1.00783 0.94825 1.00732 1.22387 0.99283 1.01535 0.98869 0.95625 0.92425 0.92865 0.95593 0.89820 0.92996 0.92521 0.93133 0.93785 0.93368 0.92238 0.92607 0.92962 0.93065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 8.32 60.07 0.50 0.81 16 2 N -0.52 -10.93 5.17 -223.14 -1.15 -12.08 16 3 C 0.06 1.43 5.26 -1.89 -0.01 1.42 16 4 C 0.05 1.32 2.98 -89.91 -0.27 1.06 16 5 H 0.03 0.98 8.14 -51.93 -0.42 0.56 16 6 C -0.51 -14.31 8.52 -34.44 -0.29 -14.60 16 7 H 0.06 1.53 7.60 -52.49 -0.40 1.13 16 8 C 0.06 1.75 5.33 -17.82 -0.10 1.65 16 9 N -0.89 -25.70 12.04 55.43 0.67 -25.03 16 10 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 14 C -0.12 -2.50 5.78 -25.37 -0.15 -2.65 16 15 C 0.08 1.58 0.89 -130.53 -0.12 1.47 16 16 C -0.12 -2.01 8.63 37.16 0.32 -1.69 16 17 C -0.16 -2.72 6.97 37.16 0.26 -2.46 16 18 H 0.03 0.44 6.16 -51.93 -0.32 0.12 16 19 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 20 H 0.05 0.82 7.86 -51.93 -0.41 0.42 16 21 H 0.03 0.66 7.90 -51.93 -0.41 0.25 16 22 H 0.08 2.24 7.41 -51.93 -0.38 1.86 16 23 H 0.26 7.17 8.31 -40.82 -0.34 6.84 16 24 H 0.06 1.22 7.25 -51.93 -0.38 0.84 16 25 H 0.05 1.03 7.69 -51.93 -0.40 0.63 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.05 1.01 7.63 -51.93 -0.40 0.61 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.77 6.66 -51.93 -0.35 0.42 16 LS Contribution 244.07 15.07 3.68 3.68 Total: -1.00 -28.38 244.07 -6.79 -35.17 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -5.11 Total: -3.12 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: 0.15 Total: -14.99 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: -0.49 Total: -37.11 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -28.38 -6.79 -35.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259269158.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.991 kcal (2) G-P(sol) polarization free energy of solvation -28.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds