Wall clock time and date at job start Mon Mar 30 2020 01:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48541 * 110.99805 * 2 1 4 4 C 1.54938 * 103.22605 * 200.28158 * 3 2 1 5 5 H 1.08997 * 110.72310 * 279.05350 * 4 3 2 6 6 C 1.50693 * 110.72474 * 155.94901 * 4 3 2 7 7 H 1.08002 * 120.00484 * 241.45411 * 6 4 3 8 8 C 1.37881 * 120.00127 * 61.45321 * 6 4 3 9 9 N 1.31518 * 119.99424 * 359.97438 * 8 6 4 10 10 Si 1.86799 * 120.00318 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47142 * 90.00145 * 10 8 6 12 12 H 1.48504 * 109.47058 * 209.99734 * 10 8 6 13 13 H 1.48500 * 109.47296 * 330.00147 * 10 8 6 14 14 C 1.54595 * 102.92210 * 37.41378 * 4 3 2 15 15 C 1.47902 * 110.99844 * 242.60590 * 2 1 3 16 16 C 1.53000 * 109.91609 * 265.19345 * 15 2 1 17 17 C 1.52999 * 109.92077 * 26.48952 * 15 2 1 18 18 H 1.09002 * 109.47401 * 59.87334 * 1 2 3 19 19 H 1.09001 * 109.46874 * 299.87347 * 1 2 3 20 20 H 1.09004 * 109.46970 * 179.87480 * 1 2 3 21 21 H 1.09005 * 110.66282 * 318.71281 * 3 2 1 22 22 H 1.08998 * 110.66710 * 81.84805 * 3 2 1 23 23 H 0.97000 * 119.99789 * 179.97438 * 9 8 6 24 24 H 1.09000 * 110.30970 * 96.95903 * 14 4 3 25 25 H 1.09001 * 110.30582 * 219.12738 * 14 4 3 26 26 H 1.08994 * 109.47260 * 61.45533 * 16 15 2 27 27 H 1.09001 * 109.47012 * 181.45618 * 16 15 2 28 28 H 1.09004 * 109.47141 * 301.45223 * 16 15 2 29 29 H 1.09006 * 109.46905 * 58.54345 * 17 15 2 30 30 H 1.08999 * 109.47549 * 178.54779 * 17 15 2 31 31 H 1.09002 * 109.47020 * 298.55202 * 17 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3868 0.0000 4 6 3.4491 1.2107 -0.5228 5 1 4.1115 0.8838 0.2786 6 6 3.9527 2.4902 -1.1395 7 1 4.2307 2.5140 -2.1828 8 6 4.0585 3.6306 -0.3717 9 7 3.7195 3.6017 0.8987 10 14 4.6833 5.2165 -1.1359 11 1 3.5376 5.9886 -1.6803 12 1 5.3778 6.0244 -0.1014 13 1 5.6313 4.8972 -2.2335 14 6 3.2982 0.1055 -1.5931 15 6 1.9990 -0.6353 -1.2260 16 6 2.2983 -2.1120 -0.9601 17 6 0.9839 -0.5019 -2.3629 18 1 -0.3634 0.5158 -0.8888 19 1 -0.3633 0.5119 0.8911 20 1 -0.3633 -1.0277 -0.0022 21 1 1.4236 2.0205 -0.6730 22 1 2.0041 1.7977 1.0095 23 1 3.7943 4.4039 1.4389 24 1 3.2135 0.5487 -2.5853 25 1 4.1470 -0.5773 -1.5541 26 1 1.3773 -2.6255 -0.6845 27 1 2.7124 -2.5666 -1.8601 28 1 3.0186 -2.1960 -0.1463 29 1 0.7745 0.5530 -2.5410 30 1 1.3922 -0.9494 -3.2690 31 1 0.0616 -1.0139 -2.0884 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259269158.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:16 Heat of formation + Delta-G solvation = -23.573352 kcal Electronic energy + Delta-G solvation = -11801.539734 eV Core-core repulsion = 9888.705740 eV Total energy + Delta-G solvation = -1912.833994 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.47097 -35.34499 -33.09469 -32.44520 -28.32829 -27.40062 -26.28333 -24.77691 -21.57345 -19.55196 -18.40346 -16.79228 -16.33903 -15.81542 -15.32129 -14.70979 -14.36349 -13.90119 -13.79778 -13.40199 -12.90215 -12.86006 -12.58944 -12.47067 -12.39295 -12.18846 -11.96500 -11.64824 -11.37766 -10.91737 -10.88812 -10.51996 -9.14362 -8.14638 -6.25905 1.40068 1.40634 1.51442 2.41301 3.13818 3.33170 3.94455 4.10529 4.27352 4.43373 4.62382 4.68896 4.72058 4.77662 4.83200 4.96223 4.98291 5.00879 5.09033 5.20867 5.23213 5.39024 5.57709 5.58867 5.76299 5.89289 6.14153 6.40349 6.43698 6.86178 7.42140 8.94410 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.060874 B = 0.012380 C = 0.011675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.858255 B = 2261.087699 C = 2397.612419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.534 5.534 3 C 0.077 3.923 4 C 0.041 3.959 5 H -0.002 1.002 6 C -0.535 4.535 7 H 0.055 0.945 8 C 0.012 3.988 9 N -0.918 5.918 10 Si 0.957 3.043 11 H -0.275 1.275 12 H -0.282 1.282 13 H -0.266 1.266 14 C -0.111 4.111 15 C 0.079 3.921 16 C -0.117 4.117 17 C -0.156 4.156 18 H 0.030 0.970 19 H 0.055 0.945 20 H 0.083 0.917 21 H 0.009 0.991 22 H 0.050 0.950 23 H 0.262 0.738 24 H 0.054 0.946 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.045 0.955 29 H 0.035 0.965 30 H 0.072 0.928 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.156 -7.251 -4.768 10.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.258 5.258 3 C -0.051 4.051 4 C 0.022 3.978 5 H 0.016 0.984 6 C -0.573 4.573 7 H 0.073 0.927 8 C -0.187 4.187 9 N -0.557 5.557 10 Si 0.782 3.218 11 H -0.201 1.201 12 H -0.208 1.208 13 H -0.191 1.191 14 C -0.149 4.149 15 C -0.010 4.010 16 C -0.174 4.174 17 C -0.214 4.214 18 H 0.049 0.951 19 H 0.074 0.926 20 H 0.102 0.898 21 H 0.027 0.973 22 H 0.069 0.931 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.091 0.909 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.017 -7.439 -4.137 9.880 hybrid contribution 0.113 1.669 -0.637 1.790 sum -4.905 -5.769 -4.775 8.952 Atomic orbital electron populations 1.22546 0.88192 1.02156 1.00284 1.64881 1.08381 1.15861 1.36703 1.22836 0.96464 0.87010 0.98753 1.19468 0.92179 0.93038 0.93143 0.98411 1.21506 1.43936 0.95534 0.96361 0.92680 1.25821 0.95378 1.02235 0.95233 1.70100 1.48859 1.29521 1.07248 0.85576 0.78591 0.79353 0.78281 1.20094 1.20801 1.19080 1.22557 0.96395 0.97045 0.98913 1.21932 0.94358 0.95854 0.88897 1.21664 1.01542 0.92768 1.01467 1.22318 0.99619 1.00803 0.98699 0.95148 0.92579 0.89842 0.97302 0.93145 0.92947 0.92682 0.92269 0.91888 0.91023 0.93579 0.94562 0.90935 0.90773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 8.32 127.69 1.06 1.62 16 2 N -0.53 -21.89 5.17 -859.89 -4.45 -26.34 16 3 C 0.08 3.88 5.26 86.65 0.46 4.34 16 4 C 0.04 2.16 2.98 -10.34 -0.03 2.13 16 5 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 6 C -0.54 -30.33 8.52 25.60 0.22 -30.11 16 7 H 0.05 3.05 7.60 -2.91 -0.02 3.02 16 8 C 0.01 0.71 5.33 84.66 0.45 1.16 16 9 N -0.92 -54.60 12.04 21.45 0.26 -54.34 16 10 Si 0.96 44.20 29.54 68.60 2.03 46.22 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 13 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 14 C -0.11 -4.73 5.78 31.47 0.18 -4.55 16 15 C 0.08 2.84 0.89 3.67 0.00 2.85 16 16 C -0.12 -3.44 8.63 71.98 0.62 -2.82 16 17 C -0.16 -4.74 6.97 71.98 0.50 -4.24 16 18 H 0.03 0.98 6.16 -2.39 -0.01 0.97 16 19 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 20 H 0.08 2.28 7.86 -2.38 -0.02 2.26 16 21 H 0.01 0.46 7.90 -2.38 -0.02 0.44 16 22 H 0.05 2.83 7.41 -2.39 -0.02 2.81 16 23 H 0.26 14.74 8.31 -92.71 -0.77 13.96 16 24 H 0.05 2.33 7.25 -2.39 -0.02 2.31 16 25 H 0.06 2.36 7.69 -2.39 -0.02 2.34 16 26 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.05 1.47 8.14 -2.39 -0.02 1.46 16 29 H 0.04 1.23 7.63 -2.38 -0.02 1.21 16 30 H 0.07 1.91 8.14 -2.39 -0.02 1.90 16 31 H 0.07 1.92 6.66 -2.39 -0.02 1.90 16 Total: -1.00 -61.74 244.07 2.37 -59.37 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: 1.07 Total: 4.72 kcal Atomic # 6 Polarization: -33.10 SS G_CDS: 3.47 Total: -29.64 kcal Atomic # 7 Polarization: -76.48 SS G_CDS: -4.19 Total: -80.67 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -61.74 2.37 -59.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259269158.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.794 kcal (2) G-P(sol) polarization free energy of solvation -61.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds