Wall clock time and date at job start Mon Mar 30 2020 01:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48537 * 111.00377 * 2 1 4 4 C 1.54935 * 103.22865 * 159.71990 * 3 2 1 5 5 H 1.09004 * 110.87383 * 81.01962 * 4 3 2 6 6 C 1.50698 * 110.72022 * 204.22597 * 4 3 2 7 7 H 1.08009 * 119.99594 * 113.50260 * 6 4 3 8 8 C 1.37875 * 120.00663 * 293.50091 * 6 4 3 9 9 N 1.31514 * 119.99510 * 0.02562 * 8 6 4 10 10 Si 1.86795 * 120.00520 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46979 * 90.00167 * 10 8 6 12 12 H 1.48499 * 109.47313 * 210.00108 * 10 8 6 13 13 H 1.48503 * 109.47102 * 330.00581 * 10 8 6 14 14 C 1.54592 * 102.92273 * 322.58632 * 4 3 2 15 15 C 1.48127 * 110.95322 * 117.37030 * 2 1 3 16 16 C 1.52997 * 109.95260 * 94.79508 * 15 2 1 17 17 C 1.53000 * 109.99450 * 333.43005 * 15 2 1 18 18 H 1.08994 * 109.46846 * 60.12453 * 1 2 3 19 19 H 1.09001 * 109.47064 * 180.12616 * 1 2 3 20 20 H 1.08998 * 109.46811 * 300.12786 * 1 2 3 21 21 H 1.09004 * 110.66449 * 41.28334 * 3 2 1 22 22 H 1.09005 * 110.66727 * 278.16119 * 3 2 1 23 23 H 0.97006 * 120.00258 * 179.97438 * 9 8 6 24 24 H 1.09002 * 110.30862 * 140.87501 * 14 4 3 25 25 H 1.09000 * 110.30885 * 262.94400 * 14 4 3 26 26 H 1.09003 * 109.47463 * 177.47197 * 16 15 2 27 27 H 1.08998 * 109.47222 * 297.47457 * 16 15 2 28 28 H 1.09006 * 109.46747 * 57.47001 * 16 15 2 29 29 H 1.08998 * 109.47451 * 302.50690 * 17 15 2 30 30 H 1.09007 * 109.46910 * 62.50449 * 17 15 2 31 31 H 1.08998 * 109.47145 * 182.49997 * 17 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3867 0.0000 4 6 3.4492 1.2106 0.5228 5 1 4.1141 0.8847 -0.2772 6 6 3.9512 2.4889 1.1432 7 1 4.1514 2.5321 2.2037 8 6 4.1551 3.6032 0.3573 9 7 3.9109 3.5506 -0.9339 10 14 4.7766 5.1878 1.1265 11 1 6.2613 5.2027 1.0983 12 1 4.2554 6.3480 0.3600 13 1 4.3075 5.2726 2.5330 14 6 3.2983 0.1053 1.5931 15 6 1.9987 -0.6360 1.2285 16 6 2.2977 -2.1130 0.9644 17 6 0.9849 -0.5009 2.3664 18 1 -0.3633 0.5119 -0.8911 19 1 -0.3633 -1.0277 0.0023 20 1 -0.3633 0.5158 0.8888 21 1 1.4238 2.0205 0.6729 22 1 2.0041 1.7977 -1.0096 23 1 4.0539 4.3347 -1.4869 24 1 4.1471 -0.5775 1.5540 25 1 3.2154 0.5485 2.5854 26 1 2.7286 -2.5622 1.8592 27 1 1.3735 -2.6305 0.7072 28 1 3.0040 -2.1987 0.1386 29 1 0.7628 0.5533 2.5319 30 1 0.0684 -1.0279 2.1009 31 1 1.4011 -0.9319 3.2769 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259269163.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:18 Heat of formation + Delta-G solvation = -5.821539 kcal Electronic energy + Delta-G solvation = -11786.353337 eV Core-core repulsion = 9874.289120 eV Total energy + Delta-G solvation = -1912.064218 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.81166 -33.31169 -31.56008 -30.54488 -26.94444 -25.55067 -24.60412 -23.02076 -19.62329 -17.99791 -16.32978 -15.06783 -14.41825 -14.12850 -13.76875 -13.14251 -12.77988 -12.16267 -12.08643 -11.94854 -11.26237 -11.05837 -10.97535 -10.92526 -10.59681 -10.48944 -10.36688 -9.96351 -9.55936 -9.05190 -8.88196 -8.37779 -7.50790 -6.00591 -4.03756 3.30928 3.37707 3.40626 4.43650 4.87209 5.30915 5.43199 5.56249 5.77558 5.84029 6.00824 6.07138 6.19898 6.22346 6.33709 6.39129 6.47081 6.51898 6.57896 6.77385 7.00393 7.09853 7.22459 7.63256 7.73822 7.87871 8.00354 8.10795 8.48343 9.00076 9.60445 11.09192 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.060924 B = 0.012260 C = 0.011612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.475193 B = 2283.393456 C = 2410.755669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.522 5.522 3 C 0.056 3.944 4 C 0.052 3.948 5 H 0.038 0.962 6 C -0.515 4.515 7 H 0.056 0.944 8 C 0.063 3.937 9 N -0.888 5.888 10 Si 0.890 3.110 11 H -0.280 1.280 12 H -0.287 1.287 13 H -0.275 1.275 14 C -0.116 4.116 15 C 0.083 3.917 16 C -0.123 4.123 17 C -0.162 4.162 18 H 0.057 0.943 19 H 0.053 0.947 20 H 0.025 0.975 21 H 0.026 0.974 22 H 0.080 0.920 23 H 0.260 0.740 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.048 0.952 27 H 0.043 0.957 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.718 -6.312 3.539 8.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.246 5.246 3 C -0.071 4.071 4 C 0.033 3.967 5 H 0.057 0.943 6 C -0.553 4.553 7 H 0.074 0.926 8 C -0.139 4.139 9 N -0.526 5.526 10 Si 0.718 3.282 11 H -0.206 1.206 12 H -0.213 1.213 13 H -0.200 1.200 14 C -0.154 4.154 15 C -0.007 4.007 16 C -0.181 4.181 17 C -0.220 4.220 18 H 0.076 0.924 19 H 0.072 0.928 20 H 0.044 0.956 21 H 0.044 0.956 22 H 0.098 0.902 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.566 -6.483 2.895 8.441 hybrid contribution -0.080 1.424 1.058 1.776 sum -4.646 -5.058 3.953 7.925 Atomic orbital electron populations 1.22463 0.90456 1.00227 1.00063 1.64990 1.06134 1.18491 1.35020 1.23326 0.97333 0.85242 1.01158 1.19517 0.92135 0.92131 0.92931 0.94343 1.21170 1.44213 0.95600 0.94354 0.92627 1.25006 0.95284 0.98790 0.94827 1.69965 1.48555 1.29709 1.04384 0.86634 0.79090 0.83231 0.79288 1.20646 1.21257 1.19983 1.22626 0.94176 0.98043 1.00591 1.21838 0.95294 0.94762 0.88788 1.21709 1.00749 0.94783 1.00813 1.22376 0.99266 1.01509 0.98870 0.92429 0.92833 0.95614 0.95555 0.90176 0.92989 0.93109 0.92556 0.93332 0.93804 0.92201 0.92613 0.93097 0.92927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 8.34 60.07 0.50 0.80 16 2 N -0.52 -10.85 5.18 -222.98 -1.16 -12.00 16 3 C 0.06 1.37 5.45 -1.90 -0.01 1.36 16 4 C 0.05 1.34 2.89 -89.91 -0.26 1.07 16 5 H 0.04 1.09 8.14 -51.93 -0.42 0.66 16 6 C -0.51 -14.30 8.48 -34.44 -0.29 -14.59 16 7 H 0.06 1.52 7.55 -52.48 -0.40 1.13 16 8 C 0.06 1.76 5.36 -17.82 -0.10 1.66 16 9 N -0.89 -25.77 12.42 55.43 0.69 -25.08 16 10 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 14 C -0.12 -2.50 5.77 -25.38 -0.15 -2.65 16 15 C 0.08 1.57 0.89 -130.41 -0.12 1.45 16 16 C -0.12 -2.00 8.64 37.16 0.32 -1.68 16 17 C -0.16 -2.69 6.96 37.16 0.26 -2.43 16 18 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 19 H 0.05 0.82 7.87 -51.93 -0.41 0.42 16 20 H 0.03 0.44 6.15 -51.93 -0.32 0.12 16 21 H 0.03 0.66 7.90 -51.93 -0.41 0.25 16 22 H 0.08 2.13 7.66 -51.93 -0.40 1.73 16 23 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 24 H 0.05 1.03 7.69 -51.93 -0.40 0.63 16 25 H 0.06 1.21 7.21 -51.93 -0.37 0.84 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.05 1.00 7.59 -51.93 -0.39 0.61 16 30 H 0.05 0.76 6.75 -51.93 -0.35 0.41 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 244.76 15.07 3.69 3.69 Total: -1.00 -28.43 244.76 -6.76 -35.19 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: -5.12 Total: -3.17 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: 0.16 Total: -15.00 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: -0.47 Total: -37.08 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -28.43 -6.76 -35.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259269163.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.371 kcal (2) G-P(sol) polarization free energy of solvation -28.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds