Wall clock time and date at job start Mon Mar 30 2020 01:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48537 * 111.00377 * 2 1 4 4 C 1.54935 * 103.22865 * 159.71990 * 3 2 1 5 5 H 1.09004 * 110.87383 * 81.01962 * 4 3 2 6 6 C 1.50698 * 110.72022 * 204.22597 * 4 3 2 7 7 H 1.08009 * 119.99594 * 113.50260 * 6 4 3 8 8 C 1.37875 * 120.00663 * 293.50091 * 6 4 3 9 9 N 1.31514 * 119.99510 * 0.02562 * 8 6 4 10 10 Si 1.86795 * 120.00520 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46979 * 90.00167 * 10 8 6 12 12 H 1.48499 * 109.47313 * 210.00108 * 10 8 6 13 13 H 1.48503 * 109.47102 * 330.00581 * 10 8 6 14 14 C 1.54592 * 102.92273 * 322.58632 * 4 3 2 15 15 C 1.48127 * 110.95322 * 117.37030 * 2 1 3 16 16 C 1.52997 * 109.95260 * 94.79508 * 15 2 1 17 17 C 1.53000 * 109.99450 * 333.43005 * 15 2 1 18 18 H 1.08994 * 109.46846 * 60.12453 * 1 2 3 19 19 H 1.09001 * 109.47064 * 180.12616 * 1 2 3 20 20 H 1.08998 * 109.46811 * 300.12786 * 1 2 3 21 21 H 1.09004 * 110.66449 * 41.28334 * 3 2 1 22 22 H 1.09005 * 110.66727 * 278.16119 * 3 2 1 23 23 H 0.97006 * 120.00258 * 179.97438 * 9 8 6 24 24 H 1.09002 * 110.30862 * 140.87501 * 14 4 3 25 25 H 1.09000 * 110.30885 * 262.94400 * 14 4 3 26 26 H 1.09003 * 109.47463 * 177.47197 * 16 15 2 27 27 H 1.08998 * 109.47222 * 297.47457 * 16 15 2 28 28 H 1.09006 * 109.46747 * 57.47001 * 16 15 2 29 29 H 1.08998 * 109.47451 * 302.50690 * 17 15 2 30 30 H 1.09007 * 109.46910 * 62.50449 * 17 15 2 31 31 H 1.08998 * 109.47145 * 182.49997 * 17 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3867 0.0000 4 6 3.4492 1.2106 0.5228 5 1 4.1141 0.8847 -0.2772 6 6 3.9512 2.4889 1.1432 7 1 4.1514 2.5321 2.2037 8 6 4.1551 3.6032 0.3573 9 7 3.9109 3.5506 -0.9339 10 14 4.7766 5.1878 1.1265 11 1 6.2613 5.2027 1.0983 12 1 4.2554 6.3480 0.3600 13 1 4.3075 5.2726 2.5330 14 6 3.2983 0.1053 1.5931 15 6 1.9987 -0.6360 1.2285 16 6 2.2977 -2.1130 0.9644 17 6 0.9849 -0.5009 2.3664 18 1 -0.3633 0.5119 -0.8911 19 1 -0.3633 -1.0277 0.0023 20 1 -0.3633 0.5158 0.8888 21 1 1.4238 2.0205 0.6729 22 1 2.0041 1.7977 -1.0096 23 1 4.0539 4.3347 -1.4869 24 1 4.1471 -0.5775 1.5540 25 1 3.2154 0.5485 2.5854 26 1 2.7286 -2.5622 1.8592 27 1 1.3735 -2.6305 0.7072 28 1 3.0040 -2.1987 0.1386 29 1 0.7628 0.5533 2.5319 30 1 0.0684 -1.0279 2.1009 31 1 1.4011 -0.9319 3.2769 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259269163.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:17 Heat of formation + Delta-G solvation = -24.270119 kcal Electronic energy + Delta-G solvation = -11787.153328 eV Core-core repulsion = 9874.289120 eV Total energy + Delta-G solvation = -1912.864208 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.45467 -35.32884 -33.10309 -32.46403 -28.32344 -27.39447 -26.29639 -24.77073 -21.57081 -19.55222 -18.42934 -16.80335 -16.31567 -15.81973 -15.31739 -14.71047 -14.36118 -13.91026 -13.79933 -13.39829 -12.90085 -12.87297 -12.58698 -12.47628 -12.38182 -12.20348 -11.95404 -11.64059 -11.39921 -10.93602 -10.88275 -10.51739 -9.15162 -8.14898 -6.25925 1.40466 1.40508 1.51228 2.41373 3.14023 3.31681 3.94428 4.10437 4.27656 4.43121 4.61665 4.68827 4.71911 4.77256 4.83226 4.95822 4.98218 5.00710 5.08842 5.20707 5.21781 5.38689 5.57373 5.58134 5.75177 5.88323 6.13081 6.40459 6.42881 6.86518 7.42171 8.94639 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.060924 B = 0.012260 C = 0.011612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.475193 B = 2283.393456 C = 2410.755669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.533 5.533 3 C 0.074 3.926 4 C 0.042 3.958 5 H 0.000 1.000 6 C -0.534 4.534 7 H 0.055 0.945 8 C 0.012 3.988 9 N -0.919 5.919 10 Si 0.956 3.044 11 H -0.274 1.274 12 H -0.283 1.283 13 H -0.267 1.267 14 C -0.111 4.111 15 C 0.079 3.921 16 C -0.117 4.117 17 C -0.156 4.156 18 H 0.056 0.944 19 H 0.083 0.917 20 H 0.031 0.969 21 H 0.011 0.989 22 H 0.047 0.953 23 H 0.262 0.738 24 H 0.058 0.942 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.045 0.955 29 H 0.036 0.964 30 H 0.074 0.926 31 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.454 -7.186 4.873 10.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.258 5.258 3 C -0.054 4.054 4 C 0.023 3.977 5 H 0.018 0.982 6 C -0.572 4.572 7 H 0.073 0.927 8 C -0.187 4.187 9 N -0.558 5.558 10 Si 0.782 3.218 11 H -0.200 1.200 12 H -0.209 1.209 13 H -0.191 1.191 14 C -0.149 4.149 15 C -0.010 4.010 16 C -0.175 4.175 17 C -0.214 4.214 18 H 0.075 0.925 19 H 0.101 0.899 20 H 0.049 0.951 21 H 0.030 0.970 22 H 0.065 0.935 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.092 0.908 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.308 -7.375 4.241 10.028 hybrid contribution 0.152 1.655 0.620 1.773 sum -5.155 -5.721 4.861 9.107 Atomic orbital electron populations 1.22550 0.88161 1.02194 1.00330 1.64940 1.08414 1.15751 1.36647 1.22868 0.96709 0.87262 0.98519 1.19458 0.92067 0.93036 0.93180 0.98204 1.21512 1.44464 0.96784 0.94472 0.92678 1.25826 0.95435 1.02180 0.95246 1.70102 1.49406 1.30632 1.05695 0.85581 0.78637 0.78974 0.78641 1.19965 1.20857 1.19130 1.22560 0.96378 0.97079 0.98925 1.21971 0.94361 0.95835 0.88870 1.21664 1.01559 0.92771 1.01465 1.22307 0.99593 1.00834 0.98652 0.92543 0.89857 0.95074 0.97027 0.93496 0.92944 0.92332 0.92690 0.91036 0.91853 0.93596 0.94490 0.90762 0.90968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 8.34 127.69 1.06 1.59 16 2 N -0.53 -21.73 5.18 -859.39 -4.46 -26.18 16 3 C 0.07 3.71 5.45 86.65 0.47 4.19 16 4 C 0.04 2.21 2.89 -10.34 -0.03 2.18 16 5 H 0.00 -0.02 8.14 -2.38 -0.02 -0.04 16 6 C -0.53 -30.24 8.48 25.60 0.22 -30.02 16 7 H 0.05 3.04 7.55 -2.91 -0.02 3.02 16 8 C 0.01 0.69 5.36 84.65 0.45 1.15 16 9 N -0.92 -54.85 12.42 21.45 0.27 -54.58 16 10 Si 0.96 44.20 29.54 68.60 2.03 46.23 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 13 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 14 C -0.11 -4.74 5.77 31.47 0.18 -4.56 16 15 C 0.08 2.83 0.89 3.63 0.00 2.83 16 16 C -0.12 -3.44 8.64 71.98 0.62 -2.82 16 17 C -0.16 -4.69 6.96 71.98 0.50 -4.19 16 18 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 19 H 0.08 2.25 7.87 -2.39 -0.02 2.23 16 20 H 0.03 0.99 6.15 -2.39 -0.01 0.98 16 21 H 0.01 0.59 7.90 -2.38 -0.02 0.58 16 22 H 0.05 2.61 7.66 -2.38 -0.02 2.59 16 23 H 0.26 14.78 8.31 -92.70 -0.77 14.01 16 24 H 0.06 2.34 7.69 -2.39 -0.02 2.32 16 25 H 0.05 2.32 7.21 -2.39 -0.02 2.30 16 26 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 29 H 0.04 1.24 7.59 -2.39 -0.02 1.23 16 30 H 0.07 1.90 6.75 -2.38 -0.02 1.88 16 31 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -61.86 244.76 2.39 -59.47 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: 1.07 Total: 4.72 kcal Atomic # 6 Polarization: -33.14 SS G_CDS: 3.49 Total: -29.65 kcal Atomic # 7 Polarization: -76.58 SS G_CDS: -4.19 Total: -80.77 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -61.86 2.39 -59.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259269163.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.200 kcal (2) G-P(sol) polarization free energy of solvation -61.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds