Wall clock time and date at job start Mon Mar 30 2020 02:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 110.36218 * 2 1 4 4 C 1.54375 * 110.41271 * 122.34868 * 2 1 3 5 5 C 1.54266 * 105.06062 * 142.75155 * 4 2 1 6 6 C 1.54385 * 105.05754 * 0.02562 * 5 4 2 7 7 H 1.09002 * 110.41170 * 94.92514 * 6 5 4 8 8 C 1.53007 * 110.41003 * 217.24911 * 6 5 4 9 9 C 1.52992 * 109.47090 * 183.35152 * 8 6 5 10 10 C 1.50701 * 109.47143 * 179.97438 * 9 8 6 11 11 H 1.08000 * 119.99725 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99934 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00438 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99685 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47102 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.46973 * 120.00365 * 14 12 10 17 17 H 1.48505 * 109.47065 * 240.00271 * 14 12 10 18 18 N 1.48556 * 104.59554 * 336.14350 * 6 5 4 19 19 H 1.08991 * 109.47332 * 297.64988 * 1 2 3 20 20 H 1.09001 * 109.47357 * 57.65252 * 1 2 3 21 21 H 1.09005 * 109.46857 * 177.64624 * 1 2 3 22 22 H 1.09001 * 110.32427 * 23.85700 * 4 2 1 23 23 H 1.08996 * 110.41308 * 261.68889 * 4 2 1 24 24 H 1.08995 * 110.32360 * 241.10571 * 5 4 2 25 25 H 1.08993 * 110.40836 * 118.93872 * 5 4 2 26 26 H 1.09001 * 109.46977 * 303.35476 * 8 6 5 27 27 H 1.09002 * 109.46697 * 63.35195 * 8 6 5 28 28 H 1.09001 * 109.47475 * 300.00019 * 9 8 6 29 29 H 1.09001 * 109.47313 * 59.99865 * 9 8 6 30 30 H 0.96993 * 120.00398 * 179.97438 * 13 12 10 31 31 H 1.00901 * 111.00015 * 159.03782 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9093 1.0220 0.0000 4 6 2.0684 -0.7741 1.2223 5 6 3.3196 -1.5156 0.7078 6 6 3.4321 -1.1264 -0.7820 7 1 4.1092 -0.2810 -0.9039 8 6 3.9149 -2.3191 -1.6100 9 6 4.0987 -1.8878 -3.0663 10 6 4.5748 -3.0623 -3.8818 11 1 4.7303 -4.0206 -3.4086 12 6 4.8109 -2.9137 -5.2320 13 7 4.6211 -1.7469 -5.8083 14 14 5.4004 -4.3697 -6.2429 15 1 5.5342 -5.5600 -5.3651 16 1 4.4170 -4.6563 -7.3182 17 1 6.7179 -4.0505 -6.8492 18 7 2.0511 -0.7451 -1.1746 19 1 -0.3633 0.4769 0.9102 20 1 -0.3634 0.5498 -0.8682 21 1 -0.3633 -1.0269 -0.0422 22 1 1.3243 -1.4877 1.5763 23 1 2.3394 -0.0833 2.0206 24 1 3.1896 -2.5930 0.8093 25 1 4.2056 -1.1889 1.2520 26 1 4.8658 -2.6754 -1.2137 27 1 3.1769 -3.1196 -1.5585 28 1 3.1478 -1.5315 -3.4626 29 1 4.8366 -1.0872 -3.1178 30 1 4.7875 -1.6422 -6.7581 31 1 2.0572 -0.1629 -1.9987 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259505567.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:19 Heat of formation + Delta-G solvation = -45.687681 kcal Electronic energy + Delta-G solvation = -11129.123290 eV Core-core repulsion = 9215.330347 eV Total energy + Delta-G solvation = -1913.792943 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.77906 -35.77741 -33.80205 -31.45793 -30.69623 -27.72428 -25.28142 -22.70160 -21.09594 -20.90236 -18.48154 -17.66393 -16.49699 -15.95149 -15.57843 -14.44170 -14.28308 -14.07132 -13.81525 -13.27660 -12.97488 -12.86325 -12.68301 -12.67088 -12.29296 -12.13962 -11.72598 -11.53951 -11.32739 -11.25299 -10.87159 -10.53848 -9.43922 -8.18971 -6.29624 1.38971 1.39682 1.53136 2.41442 3.13628 3.31908 3.73652 3.93781 4.17908 4.22327 4.50620 4.52461 4.69376 4.78445 4.81433 4.91239 5.02243 5.04723 5.12159 5.27090 5.31885 5.37097 5.40889 5.54302 5.77035 5.88338 6.07904 6.28418 6.42797 6.87773 7.39120 8.92814 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.073754 B = 0.008230 C = 0.007800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.551190 B = 3401.286631 C = 3588.861999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.052 3.948 3 H 0.047 0.953 4 C -0.113 4.113 5 C -0.118 4.118 6 C 0.068 3.932 7 H 0.034 0.966 8 C -0.084 4.084 9 C 0.030 3.970 10 C -0.544 4.544 11 H 0.056 0.944 12 C -0.002 4.002 13 N -0.933 5.933 14 Si 0.965 3.035 15 H -0.263 1.263 16 H -0.278 1.278 17 H -0.276 1.276 18 N -0.670 5.670 19 H 0.078 0.922 20 H 0.049 0.951 21 H 0.053 0.947 22 H 0.075 0.925 23 H 0.085 0.915 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.052 0.948 27 H 0.048 0.952 28 H -0.003 1.003 29 H -0.017 1.017 30 H 0.263 0.737 31 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.904 2.597 12.629 13.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.058 4.058 3 H 0.065 0.935 4 C -0.151 4.151 5 C -0.157 4.157 6 C -0.041 4.041 7 H 0.052 0.948 8 C -0.122 4.122 9 C -0.008 4.008 10 C -0.582 4.582 11 H 0.074 0.926 12 C -0.199 4.199 13 N -0.573 5.573 14 Si 0.789 3.211 15 H -0.187 1.187 16 H -0.203 1.203 17 H -0.202 1.202 18 N -0.300 5.300 19 H 0.097 0.903 20 H 0.068 0.932 21 H 0.072 0.928 22 H 0.094 0.906 23 H 0.104 0.896 24 H 0.086 0.914 25 H 0.097 0.903 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.016 0.984 29 H 0.001 0.999 30 H 0.071 0.929 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.238 2.022 12.607 13.801 hybrid contribution 0.897 0.407 -1.144 1.510 sum -4.340 2.430 11.463 12.496 Atomic orbital electron populations 1.21659 0.93060 1.02032 1.02001 1.22612 0.96717 0.95460 0.90973 0.93494 1.22345 0.96889 0.99162 0.96664 1.22353 0.98887 1.01105 0.93314 1.22484 0.89561 0.96589 0.95513 0.94821 1.21410 0.98957 0.96660 0.95156 1.18950 0.94556 0.94913 0.92338 1.21772 1.44512 0.97458 0.94409 0.92566 1.25983 0.95732 0.98838 0.99354 1.70099 1.50457 1.25253 1.11536 0.85405 0.77974 0.79291 0.78409 1.18715 1.20332 1.20206 1.63634 1.18702 1.42307 1.05308 0.90297 0.93232 0.92798 0.90595 0.89622 0.91398 0.90293 0.92934 0.93348 0.98431 0.99851 0.92851 0.85465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 9.48 71.98 0.68 -2.25 16 2 C 0.05 1.37 3.78 45.06 0.17 1.54 16 3 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 4 C -0.11 -2.61 6.55 31.49 0.21 -2.40 16 5 C -0.12 -3.28 6.55 31.49 0.21 -3.08 16 6 C 0.07 2.45 3.13 45.07 0.14 2.59 16 7 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 8 C -0.08 -3.67 4.75 30.59 0.15 -3.53 16 9 C 0.03 1.62 4.87 29.85 0.15 1.77 16 10 C -0.54 -32.29 9.11 25.60 0.23 -32.05 16 11 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 12 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 13 N -0.93 -58.17 13.29 21.45 0.28 -57.88 16 14 Si 0.96 45.55 29.54 68.60 2.03 47.58 16 15 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 16 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 18 N -0.67 -23.34 6.69 -457.37 -3.06 -26.40 16 19 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 20 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 21 H 0.05 1.31 8.14 -2.38 -0.02 1.30 16 22 H 0.08 1.66 7.86 -2.39 -0.02 1.64 16 23 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.07 1.91 7.86 -2.39 -0.02 1.89 16 25 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.00 -0.16 7.58 -2.39 -0.02 -0.18 16 29 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 30 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 31 H 0.33 12.24 8.51 -89.69 -0.76 11.48 16 Total: -1.00 -65.36 253.79 1.96 -63.41 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 0.31 Total: 10.35 kcal Atomic # 6 Polarization: -39.44 SS G_CDS: 2.39 Total: -37.05 kcal Atomic # 7 Polarization: -81.51 SS G_CDS: -2.77 Total: -84.29 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -65.36 1.96 -63.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259505567.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.718 kcal (2) G-P(sol) polarization free energy of solvation -65.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds