Wall clock time and date at job start Mon Mar 30 2020 02:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.88055 * 2 1 4 4 C 1.54318 * 109.89136 * 238.97491 * 2 1 3 5 5 C 1.55145 * 103.02030 * 218.14631 * 4 2 1 6 6 C 1.54907 * 101.65040 * 35.64757 * 5 4 2 7 7 H 1.09002 * 110.37076 * 81.87674 * 6 5 4 8 8 C 1.53001 * 110.37194 * 204.09808 * 6 5 4 9 9 C 1.53000 * 109.46886 * 183.44775 * 8 6 5 10 10 C 1.50703 * 109.46912 * 180.02562 * 9 8 6 11 11 H 1.07996 * 119.99751 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00001 * 180.02562 * 10 9 8 13 13 N 1.31517 * 120.00094 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99955 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47171 * 89.99544 * 14 12 10 16 16 H 1.48500 * 109.46632 * 209.99795 * 14 12 10 17 17 H 1.48494 * 109.47053 * 329.99231 * 14 12 10 18 18 N 1.47608 * 109.93775 * 121.14626 * 2 1 3 19 19 H 1.09003 * 109.46550 * 181.02862 * 1 2 3 20 20 H 1.08997 * 109.47224 * 301.02981 * 1 2 3 21 21 H 1.09001 * 109.47078 * 61.02862 * 1 2 3 22 22 H 1.08996 * 110.71310 * 99.76021 * 4 2 1 23 23 H 1.09007 * 110.85062 * 336.59691 * 4 2 1 24 24 H 1.09001 * 110.98478 * 277.56028 * 5 4 2 25 25 H 1.09002 * 110.99083 * 153.73804 * 5 4 2 26 26 H 1.09001 * 109.46652 * 63.45120 * 8 6 5 27 27 H 1.08992 * 109.47514 * 303.45209 * 8 6 5 28 28 H 1.09002 * 109.47398 * 300.00496 * 9 8 6 29 29 H 1.09001 * 109.47194 * 60.00677 * 9 8 6 30 30 H 0.97000 * 120.00333 * 179.97438 * 13 12 10 31 31 H 1.00900 * 111.10707 * 356.32514 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9007 1.0251 0.0000 4 6 2.0550 -0.7479 -1.2435 5 6 3.2918 -1.5089 -0.6974 6 6 2.8243 -1.8806 0.7320 7 1 2.2031 -2.7759 0.7072 8 6 4.0309 -2.0960 1.6478 9 6 3.5491 -2.5451 3.0288 10 6 4.7375 -2.7567 3.9310 11 1 5.7363 -2.5874 3.5570 12 6 4.5495 -3.1665 5.2340 13 7 3.3331 -3.3722 5.6897 14 14 6.0225 -3.4281 6.3526 15 1 6.3392 -2.1607 7.0587 16 1 5.7067 -4.4838 7.3481 17 1 7.1925 -3.8479 5.5403 18 7 2.0333 -0.7177 1.1876 19 1 -0.3632 -1.0276 0.0184 20 1 -0.3633 0.5297 0.8806 21 1 -0.3633 0.4978 -0.8991 22 1 2.3487 -0.0434 -2.0216 23 1 1.3079 -1.4466 -1.6202 24 1 4.1669 -0.8598 -0.6656 25 1 3.4920 -2.4032 -1.2876 26 1 4.5863 -1.1629 1.7424 27 1 4.6782 -2.8625 1.2218 28 1 2.9018 -1.7786 3.4548 29 1 2.9937 -3.4782 2.9341 30 1 3.2008 -3.6609 6.6062 31 1 1.2742 -1.0084 1.7853 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259505573.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:22 Heat of formation + Delta-G solvation = -25.825349 kcal Electronic energy + Delta-G solvation = -11144.180794 eV Core-core repulsion = 9231.249146 eV Total energy + Delta-G solvation = -1912.931648 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.60191 -33.80657 -31.98862 -30.19798 -28.99681 -25.95505 -23.66807 -20.98458 -20.44722 -19.08010 -16.26153 -15.91971 -15.21992 -14.38984 -13.74307 -13.13606 -12.80685 -12.53486 -12.35516 -11.92553 -11.73615 -11.22429 -11.04299 -10.82432 -10.78691 -10.58192 -10.35645 -10.31613 -9.60081 -9.09942 -8.90598 -8.23616 -7.88472 -5.90006 -3.90982 3.37997 3.43591 3.47321 4.54063 4.56523 4.92270 5.00385 5.16213 5.45697 5.49296 5.54760 5.59477 5.76389 5.88163 5.96722 6.13116 6.17819 6.28040 6.46086 6.50562 6.71621 7.02061 7.29514 7.48984 7.80519 7.88733 8.04436 8.13726 8.56384 9.16769 9.72002 11.21397 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.076304 B = 0.008287 C = 0.007753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 366.866896 B = 3377.927440 C = 3610.620041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.071 3.929 3 H 0.077 0.923 4 C -0.139 4.139 5 C -0.127 4.127 6 C 0.078 3.922 7 H 0.043 0.957 8 C -0.095 4.095 9 C 0.024 3.976 10 C -0.516 4.516 11 H 0.053 0.947 12 C 0.055 3.945 13 N -0.897 5.897 14 Si 0.890 3.110 15 H -0.281 1.281 16 H -0.288 1.288 17 H -0.275 1.275 18 N -0.669 5.669 19 H 0.053 0.947 20 H 0.060 0.940 21 H 0.057 0.943 22 H 0.066 0.934 23 H 0.063 0.937 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.054 0.946 27 H 0.046 0.954 28 H 0.023 0.977 29 H 0.007 0.993 30 H 0.258 0.742 31 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.857 4.454 -11.685 13.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.039 4.039 3 H 0.095 0.905 4 C -0.178 4.178 5 C -0.165 4.165 6 C -0.031 4.031 7 H 0.061 0.939 8 C -0.134 4.134 9 C -0.013 4.013 10 C -0.554 4.554 11 H 0.071 0.929 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.718 3.282 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.200 1.200 18 N -0.300 5.300 19 H 0.072 0.928 20 H 0.079 0.921 21 H 0.076 0.924 22 H 0.085 0.915 23 H 0.081 0.919 24 H 0.091 0.909 25 H 0.085 0.915 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.041 0.959 29 H 0.026 0.974 30 H 0.068 0.932 31 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.396 4.824 -11.405 12.841 hybrid contribution -0.017 -0.786 0.420 0.891 sum -3.413 4.038 -10.986 12.192 Atomic orbital electron populations 1.22324 0.96485 1.01773 1.01999 1.22287 0.92951 0.98856 0.89829 0.90480 1.22866 0.98029 0.99238 0.97654 1.22771 0.97723 0.99784 0.96205 1.22524 0.96040 0.91262 0.93286 0.93882 1.21597 0.94632 0.99977 0.97153 1.19061 0.96414 0.95938 0.89934 1.21314 0.93296 1.44586 0.96241 0.92890 1.25018 0.95565 0.95794 0.98170 1.69969 1.20223 1.47457 1.16076 0.86633 0.83183 0.77789 0.80614 1.20726 1.21343 1.19975 1.61973 1.26545 1.25681 1.15833 0.92832 0.92139 0.92431 0.91543 0.91852 0.90886 0.91503 0.92709 0.93561 0.95856 0.97440 0.93203 0.84198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.95 8.93 37.16 0.33 -1.61 16 2 C 0.07 0.98 4.11 -66.63 -0.27 0.70 16 3 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 4 C -0.14 -1.76 6.46 -24.91 -0.16 -1.92 16 5 C -0.13 -1.86 6.50 -24.59 -0.16 -2.02 16 6 C 0.08 1.41 3.24 -66.19 -0.21 1.19 16 7 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 8 C -0.10 -2.08 4.86 -26.73 -0.13 -2.21 16 9 C 0.02 0.63 4.89 -27.88 -0.14 0.50 16 10 C -0.52 -15.19 9.11 -34.44 -0.31 -15.50 16 11 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 12 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 13 N -0.90 -27.69 13.29 55.43 0.74 -26.95 16 14 Si 0.89 22.29 29.54 -169.99 -5.02 17.27 16 15 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 16 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 17 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 18 N -0.67 -11.64 6.67 -96.82 -0.65 -12.29 16 19 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 20 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 21 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.06 0.75 7.86 -51.93 -0.41 0.34 16 24 H 0.07 1.09 8.06 -51.93 -0.42 0.67 16 25 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.02 0.66 7.89 -51.93 -0.41 0.25 16 29 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.34 5.96 8.24 -39.29 -0.32 5.64 16 LS Contribution 253.89 15.07 3.83 3.83 Total: -1.00 -30.73 253.89 -7.59 -38.32 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -5.33 Total: -0.82 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: -1.15 Total: -19.35 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 0.09 Total: -39.25 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -30.73 -7.59 -38.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259505573.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.497 kcal (2) G-P(sol) polarization free energy of solvation -30.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds