Wall clock time and date at job start Mon Mar 30 2020 02:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46765 * 2 1 4 4 H 1.09001 * 109.51950 * 304.87175 * 3 2 1 5 5 C 1.53114 * 109.52406 * 64.99986 * 3 2 1 6 6 C 1.53036 * 109.27799 * 177.56115 * 5 3 2 7 7 N 1.46850 * 109.52384 * 300.81924 * 6 5 3 8 8 C 1.46846 * 111.19870 * 61.74019 * 7 6 5 9 9 H 1.09010 * 109.45973 * 58.27499 * 8 7 6 10 10 C 1.50699 * 109.46726 * 178.24288 * 8 7 6 11 11 H 1.07993 * 119.99894 * 120.04976 * 10 8 7 12 12 C 1.37880 * 119.99663 * 300.05874 * 10 8 7 13 13 N 1.31512 * 120.00223 * 359.97438 * 12 10 8 14 14 Si 1.86806 * 119.99653 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.46885 * 0.02562 * 14 12 10 16 16 H 1.48495 * 109.46931 * 119.99850 * 14 12 10 17 17 H 1.48496 * 109.47023 * 240.00019 * 14 12 10 18 18 C 1.53042 * 109.52384 * 298.26168 * 8 7 6 19 19 H 1.09005 * 109.47294 * 299.99808 * 1 2 3 20 20 H 1.08995 * 109.47383 * 60.00477 * 1 2 3 21 21 H 1.09005 * 109.47119 * 180.02562 * 1 2 3 22 22 H 1.08992 * 109.47065 * 240.00058 * 2 1 3 23 23 H 1.09003 * 109.47263 * 119.99262 * 2 1 3 24 24 H 1.09004 * 109.50600 * 57.62151 * 5 3 2 25 25 H 1.08996 * 109.53917 * 297.51740 * 5 3 2 26 26 H 1.08995 * 109.46942 * 60.83456 * 6 5 3 27 27 H 1.08998 * 109.46530 * 180.80782 * 6 5 3 28 28 H 1.00899 * 111.00055 * 185.84061 * 7 6 5 29 29 H 0.97003 * 119.99615 * 180.02562 * 13 12 10 30 30 H 1.08998 * 109.50041 * 299.23667 * 18 8 7 31 31 H 1.09005 * 109.50105 * 179.11475 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6075 1.9817 -0.8429 5 6 1.6354 2.1283 1.3079 6 6 2.2000 3.5506 1.3283 7 7 3.6632 3.4995 1.2137 8 6 4.0753 2.8877 -0.0561 9 1 3.6561 3.4565 -0.8862 10 6 5.5792 2.8941 -0.1519 11 1 6.1182 1.9632 -0.2472 12 6 6.2670 4.0887 -0.1178 13 7 5.6105 5.2224 -0.0021 14 14 8.1313 4.0967 -0.2358 15 1 8.6254 2.7017 -0.3589 16 1 8.5483 4.8760 -1.4291 17 1 8.7019 4.7186 0.9859 18 6 3.5666 1.4456 -0.1178 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5137 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 1.8933 -0.5138 -0.8899 23 1 1.8934 -0.5137 0.8901 24 1 2.0347 1.5662 2.1522 25 1 0.5484 2.1673 1.3780 26 1 1.7898 4.1163 0.4919 27 1 1.9260 4.0367 2.2646 28 1 4.0665 4.4182 1.3201 29 1 6.0944 6.0627 0.0216 30 1 3.9961 0.8727 0.7040 31 1 3.8592 0.9968 -1.0672 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259599980.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:35 Heat of formation + Delta-G solvation = -47.523609 kcal Electronic energy + Delta-G solvation = -11554.432814 eV Core-core repulsion = 9640.560259 eV Total energy + Delta-G solvation = -1913.872555 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.62934 -35.79895 -34.09378 -31.74134 -30.36605 -27.26607 -24.79297 -23.32947 -21.62158 -20.37062 -18.49062 -17.01939 -16.23145 -15.58102 -15.28408 -14.88263 -14.67865 -14.19829 -13.86161 -13.53614 -12.91378 -12.84145 -12.52943 -12.41879 -12.21905 -12.02545 -11.77251 -11.52698 -11.35498 -10.81981 -10.75402 -10.57730 -8.79032 -8.17995 -6.30023 1.40369 1.42173 1.54377 2.41781 3.07650 3.88334 4.00270 4.09893 4.17499 4.48693 4.58237 4.66385 4.71161 4.77389 4.92669 4.96276 5.02015 5.16495 5.20702 5.29741 5.30180 5.38406 5.47334 5.53726 5.68808 5.80828 6.19633 6.65120 7.00134 7.13983 7.42214 8.90748 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.071615 B = 0.010817 C = 0.009785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.887851 B = 2587.985781 C = 2860.946803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.112 4.112 3 C -0.087 4.087 4 H 0.048 0.952 5 C -0.097 4.097 6 C 0.049 3.951 7 N -0.693 5.693 8 C 0.212 3.788 9 H -0.048 1.048 10 C -0.530 4.530 11 H 0.056 0.944 12 C 0.015 3.985 13 N -0.927 5.927 14 Si 0.965 3.035 15 H -0.268 1.268 16 H -0.280 1.280 17 H -0.278 1.278 18 C -0.091 4.091 19 H 0.059 0.941 20 H 0.050 0.950 21 H 0.066 0.934 22 H 0.059 0.941 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.082 0.918 26 H -0.002 1.002 27 H 0.068 0.932 28 H 0.345 0.655 29 H 0.265 0.735 30 H 0.050 0.950 31 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.526 -6.711 1.159 10.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 C -0.105 4.105 4 H 0.067 0.933 5 C -0.135 4.135 6 C -0.081 4.081 7 N -0.328 5.328 8 C 0.104 3.896 9 H -0.031 1.031 10 C -0.569 4.569 11 H 0.074 0.926 12 C -0.183 4.183 13 N -0.568 5.568 14 Si 0.791 3.209 15 H -0.192 1.192 16 H -0.206 1.206 17 H -0.204 1.204 18 C -0.130 4.130 19 H 0.078 0.922 20 H 0.070 0.930 21 H 0.085 0.915 22 H 0.078 0.922 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.100 0.900 26 H 0.016 0.984 27 H 0.086 0.914 28 H 0.166 0.834 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.449 -7.117 1.521 10.414 hybrid contribution 0.897 1.273 -0.825 1.762 sum -6.552 -5.844 0.695 8.807 Atomic orbital electron populations 1.21782 0.94547 1.02138 1.01954 1.21509 0.96842 0.94731 1.01860 1.21231 0.94898 0.96953 0.97464 0.93318 1.21578 0.99963 0.94544 0.97374 1.21990 0.90154 0.97336 0.98624 1.60773 1.06550 1.28829 1.36617 1.18963 0.93611 0.91110 0.85922 1.03068 1.21606 0.92799 0.92881 1.49576 0.92605 1.25835 1.03395 0.95118 0.93955 1.69807 1.37216 0.98046 1.51733 0.85401 0.79720 0.78208 0.77614 1.19213 1.20571 1.20396 1.21552 0.94970 0.96755 0.99683 0.92164 0.93045 0.91518 0.92218 0.91906 0.91936 0.89964 0.98397 0.91374 0.83353 0.92558 0.93137 0.93540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 9.67 71.98 0.70 -2.54 16 2 C -0.11 -3.08 5.41 30.60 0.17 -2.91 16 3 C -0.09 -3.08 2.26 -10.71 -0.02 -3.10 16 4 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 5 C -0.10 -3.32 5.07 30.64 0.16 -3.16 16 6 C 0.05 2.03 6.55 86.32 0.57 2.59 16 7 N -0.69 -35.26 6.49 -495.55 -3.22 -38.47 16 8 C 0.21 11.34 2.39 44.19 0.11 11.45 16 9 H -0.05 -2.89 8.14 -2.38 -0.02 -2.91 16 10 C -0.53 -30.47 8.76 25.60 0.22 -30.24 16 11 H 0.06 3.16 7.74 -2.91 -0.02 3.13 16 12 C 0.02 0.87 5.32 84.66 0.45 1.32 16 13 N -0.93 -54.09 11.48 21.45 0.25 -53.84 16 14 Si 0.97 44.47 29.54 68.60 2.03 46.50 16 15 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 16 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 17 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 18 C -0.09 -4.02 4.60 30.65 0.14 -3.88 16 19 H 0.06 1.26 6.63 -2.38 -0.02 1.25 16 20 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 21 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 22 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 25 H 0.08 2.30 6.70 -2.39 -0.02 2.28 16 26 H 0.00 -0.10 8.14 -2.39 -0.02 -0.11 16 27 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 28 H 0.35 19.21 6.65 -89.69 -0.60 18.61 16 29 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 30 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 Total: -1.00 -61.05 244.45 2.02 -59.03 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 0.49 Total: 17.27 kcal Atomic # 6 Polarization: -32.95 SS G_CDS: 2.48 Total: -30.47 kcal Atomic # 7 Polarization: -89.35 SS G_CDS: -2.97 Total: -92.32 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -61.05 2.02 -59.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259599980.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.503 kcal (2) G-P(sol) polarization free energy of solvation -61.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds