Wall clock time and date at job start Mon Mar 30 2020 02:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47089 * 2 1 4 4 H 1.08996 * 109.47329 * 307.90008 * 3 2 1 5 5 C 1.50701 * 109.47633 * 187.89653 * 3 2 1 6 6 H 1.07993 * 120.00471 * 245.33650 * 5 3 2 7 7 C 1.37880 * 119.99601 * 65.32798 * 5 3 2 8 8 N 1.31514 * 119.99977 * 194.00440 * 7 5 3 9 9 Si 1.86799 * 120.00189 * 14.01178 * 7 5 3 10 10 H 1.48497 * 109.47535 * 89.09804 * 9 7 5 11 11 H 1.48504 * 109.47110 * 209.10334 * 9 7 5 12 12 H 1.48503 * 109.46675 * 329.09953 * 9 7 5 13 13 C 1.53000 * 109.46939 * 67.89857 * 3 2 1 14 14 H 1.08999 * 110.62896 * 56.04761 * 13 3 2 15 15 C 1.55146 * 110.70838 * 179.34043 * 13 3 2 16 16 C 1.54906 * 101.65337 * 154.03289 * 15 13 3 17 17 N 1.47840 * 104.79687 * 322.93009 * 16 15 13 18 18 C 1.47441 * 108.56771 * 24.10024 * 17 16 15 19 19 H 1.08999 * 109.47771 * 48.88476 * 1 2 3 20 20 H 1.08997 * 109.46933 * 168.88767 * 1 2 3 21 21 H 1.09003 * 109.46690 * 288.88543 * 1 2 3 22 22 H 1.09001 * 109.47445 * 120.00195 * 2 1 3 23 23 H 1.08998 * 109.47307 * 240.00632 * 2 1 3 24 24 H 0.97002 * 120.00245 * 180.02562 * 8 7 5 25 25 H 1.08997 * 110.98999 * 272.13312 * 15 13 3 26 26 H 1.09008 * 110.98975 * 35.94348 * 15 13 3 27 27 H 1.09006 * 110.37167 * 204.10123 * 16 15 13 28 28 H 1.09000 * 110.46621 * 81.81487 * 16 15 13 29 29 H 1.00899 * 110.99938 * 261.82602 * 17 16 15 30 30 H 1.09005 * 109.88471 * 239.60301 * 18 17 16 31 31 H 1.08998 * 110.02661 * 118.49064 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5659 1.9955 -0.8109 5 6 3.5342 1.4471 -0.1952 6 1 4.1809 1.7997 0.5946 7 6 4.0758 1.0010 -1.3821 8 7 5.3629 0.7431 -1.4618 9 14 2.9813 0.7631 -2.8771 10 1 2.9151 2.0300 -3.6489 11 1 3.5425 -0.3108 -3.7356 12 1 1.6160 0.3808 -2.4351 13 6 1.6982 2.1042 1.3365 14 1 2.1052 1.5263 2.1663 15 6 2.2179 3.5656 1.3739 16 6 1.2474 4.2169 2.3905 17 7 -0.0615 3.5843 2.1216 18 6 0.1718 2.2742 1.4868 19 1 -0.3634 0.6757 -0.7742 20 1 -0.3633 -1.0084 -0.1981 21 1 -0.3633 0.3326 0.9724 22 1 1.8933 -0.5139 0.8900 23 1 1.8933 -0.5137 -0.8900 24 1 5.7440 0.4296 -2.2970 25 1 3.2457 3.6053 1.7345 26 1 2.1309 4.0361 0.3945 27 1 1.1901 5.2927 2.2248 28 1 1.5676 4.0074 3.4112 29 1 -0.6341 4.1732 1.5356 30 1 -0.3025 2.2478 0.5057 31 1 -0.2299 1.4785 2.1142 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259881085.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:46 Heat of formation + Delta-G solvation = -8.040618 kcal Electronic energy + Delta-G solvation = -11755.868305 eV Core-core repulsion = 9843.707861 eV Total energy + Delta-G solvation = -1912.160444 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.51636 -34.68292 -32.00586 -29.90633 -27.91851 -26.99039 -22.93346 -20.92455 -20.41929 -18.99340 -16.86435 -15.96981 -14.86464 -14.27443 -13.72371 -12.99723 -12.84776 -12.69421 -12.46588 -11.93609 -11.69183 -11.04559 -10.90882 -10.82350 -10.63243 -10.13215 -9.84550 -9.82253 -9.63713 -9.19516 -8.88813 -8.40925 -8.05197 -6.07256 -4.01475 3.29049 3.38881 3.41947 4.44999 4.69750 5.22856 5.32476 5.44529 5.68561 5.77547 5.98419 6.05395 6.06760 6.15057 6.20584 6.39373 6.44354 6.66368 6.68488 6.74227 6.81768 7.05187 7.08794 7.22508 7.33962 7.57779 7.73382 7.83994 8.55393 9.00550 9.58927 11.05971 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.044682 B = 0.015297 C = 0.012930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.500273 B = 1829.971377 C = 2164.967882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.121 4.121 3 C 0.029 3.971 4 H 0.020 0.980 5 C -0.512 4.512 6 H 0.072 0.928 7 C 0.072 3.928 8 N -0.897 5.897 9 Si 0.862 3.138 10 H -0.282 1.282 11 H -0.291 1.291 12 H -0.250 1.250 13 C -0.083 4.083 14 H 0.068 0.932 15 C -0.132 4.132 16 C 0.041 3.959 17 N -0.694 5.694 18 C 0.042 3.958 19 H 0.043 0.957 20 H 0.035 0.965 21 H 0.061 0.939 22 H 0.052 0.948 23 H 0.053 0.947 24 H 0.262 0.738 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.329 0.671 30 H 0.055 0.945 31 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.263 3.063 3.292 10.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.159 4.159 3 C 0.010 3.990 4 H 0.038 0.962 5 C -0.550 4.550 6 H 0.090 0.910 7 C -0.129 4.129 8 N -0.535 5.535 9 Si 0.689 3.311 10 H -0.209 1.209 11 H -0.217 1.217 12 H -0.174 1.174 13 C -0.103 4.103 14 H 0.087 0.913 15 C -0.171 4.171 16 C -0.088 4.088 17 N -0.321 5.321 18 C -0.086 4.086 19 H 0.063 0.937 20 H 0.054 0.946 21 H 0.080 0.920 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.144 0.856 30 H 0.073 0.927 31 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.222 2.738 3.847 10.360 hybrid contribution -0.053 0.052 -1.898 1.899 sum -9.275 2.789 1.949 9.879 Atomic orbital electron populations 1.22307 0.98691 0.99810 1.01399 1.21967 0.92649 1.00147 1.01137 1.19108 0.96884 0.91261 0.91786 0.96241 1.20991 0.89641 1.42877 1.01489 0.91021 1.24980 0.94693 0.94415 0.98816 1.69974 1.12153 1.44953 1.26461 0.87238 0.82669 0.77828 0.83362 1.20866 1.21686 1.17408 1.22263 0.92421 0.95683 0.99919 0.91345 1.22991 0.99443 0.96045 0.98652 1.22920 0.89108 0.97122 0.99627 1.61841 1.15642 1.05308 1.49329 1.23206 0.97623 0.90652 0.97130 0.93749 0.94615 0.91996 0.92948 0.92796 0.92840 0.90911 0.91680 0.92486 0.91237 0.85626 0.92699 0.91240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.90 8.38 37.16 0.31 -2.59 16 2 C -0.12 -2.59 4.61 -26.73 -0.12 -2.71 16 3 C 0.03 0.65 0.95 -91.77 -0.09 0.57 16 4 H 0.02 0.46 6.66 -51.93 -0.35 0.11 16 5 C -0.51 -14.02 8.40 -34.44 -0.29 -14.30 16 6 H 0.07 2.13 7.65 -52.49 -0.40 1.73 16 7 C 0.07 2.06 5.33 -17.82 -0.10 1.97 16 8 N -0.90 -27.33 13.96 55.43 0.77 -26.55 16 9 Si 0.86 21.22 25.78 -169.99 -4.38 16.83 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.25 -5.77 5.47 56.52 0.31 -5.46 16 13 C -0.08 -1.64 2.44 -88.79 -0.22 -1.86 16 14 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 15 C -0.13 -2.44 5.75 -24.59 -0.14 -2.58 16 16 C 0.04 0.64 7.57 -2.30 -0.02 0.62 16 17 N -0.69 -10.73 7.39 -110.79 -0.82 -11.55 16 18 C 0.04 0.71 5.21 -2.84 -0.01 0.69 16 19 H 0.04 0.77 7.46 -51.93 -0.39 0.39 16 20 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 21 H 0.06 0.99 4.68 -51.93 -0.24 0.75 16 22 H 0.05 1.11 8.13 -51.93 -0.42 0.69 16 23 H 0.05 1.24 4.94 -51.93 -0.26 0.98 16 24 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 25 H 0.07 1.40 7.95 -51.93 -0.41 0.98 16 26 H 0.06 1.25 8.05 -51.92 -0.42 0.83 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.33 4.50 8.91 -39.29 -0.35 4.15 16 30 H 0.05 0.91 6.05 -51.93 -0.31 0.60 16 31 H 0.07 1.14 6.62 -51.93 -0.34 0.80 16 LS Contribution 233.43 15.07 3.52 3.52 Total: -1.00 -29.09 233.43 -6.40 -35.49 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -4.81 Total: 2.46 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: -0.67 Total: -20.19 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: -0.05 Total: -38.10 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.38 Total: 16.83 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -29.09 -6.40 -35.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259881085.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.445 kcal (2) G-P(sol) polarization free energy of solvation -29.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds