Wall clock time and date at job start Mon Mar 30 2020 02:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47089 * 2 1 4 4 H 1.08996 * 109.47329 * 307.90008 * 3 2 1 5 5 C 1.50701 * 109.47633 * 187.89653 * 3 2 1 6 6 H 1.07993 * 120.00471 * 245.33650 * 5 3 2 7 7 C 1.37880 * 119.99601 * 65.32798 * 5 3 2 8 8 N 1.31514 * 119.99977 * 194.00440 * 7 5 3 9 9 Si 1.86799 * 120.00189 * 14.01178 * 7 5 3 10 10 H 1.48497 * 109.47535 * 89.09804 * 9 7 5 11 11 H 1.48504 * 109.47110 * 209.10334 * 9 7 5 12 12 H 1.48503 * 109.46675 * 329.09953 * 9 7 5 13 13 C 1.53000 * 109.46939 * 67.89857 * 3 2 1 14 14 H 1.08999 * 110.62896 * 56.04761 * 13 3 2 15 15 C 1.55146 * 110.70838 * 179.34043 * 13 3 2 16 16 C 1.54906 * 101.65337 * 154.03289 * 15 13 3 17 17 N 1.47840 * 104.79687 * 322.93009 * 16 15 13 18 18 C 1.47441 * 108.56771 * 24.10024 * 17 16 15 19 19 H 1.08999 * 109.47771 * 48.88476 * 1 2 3 20 20 H 1.08997 * 109.46933 * 168.88767 * 1 2 3 21 21 H 1.09003 * 109.46690 * 288.88543 * 1 2 3 22 22 H 1.09001 * 109.47445 * 120.00195 * 2 1 3 23 23 H 1.08998 * 109.47307 * 240.00632 * 2 1 3 24 24 H 0.97002 * 120.00245 * 180.02562 * 8 7 5 25 25 H 1.08997 * 110.98999 * 272.13312 * 15 13 3 26 26 H 1.09008 * 110.98975 * 35.94348 * 15 13 3 27 27 H 1.09006 * 110.37167 * 204.10123 * 16 15 13 28 28 H 1.09000 * 110.46621 * 81.81487 * 16 15 13 29 29 H 1.00899 * 110.99938 * 261.82602 * 17 16 15 30 30 H 1.09005 * 109.88471 * 239.60301 * 18 17 16 31 31 H 1.08998 * 110.02661 * 118.49064 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5659 1.9955 -0.8109 5 6 3.5342 1.4471 -0.1952 6 1 4.1809 1.7997 0.5946 7 6 4.0758 1.0010 -1.3821 8 7 5.3629 0.7431 -1.4618 9 14 2.9813 0.7631 -2.8771 10 1 2.9151 2.0300 -3.6489 11 1 3.5425 -0.3108 -3.7356 12 1 1.6160 0.3808 -2.4351 13 6 1.6982 2.1042 1.3365 14 1 2.1052 1.5263 2.1663 15 6 2.2179 3.5656 1.3739 16 6 1.2474 4.2169 2.3905 17 7 -0.0615 3.5843 2.1216 18 6 0.1718 2.2742 1.4868 19 1 -0.3634 0.6757 -0.7742 20 1 -0.3633 -1.0084 -0.1981 21 1 -0.3633 0.3326 0.9724 22 1 1.8933 -0.5139 0.8900 23 1 1.8933 -0.5137 -0.8900 24 1 5.7440 0.4296 -2.2970 25 1 3.2457 3.6053 1.7345 26 1 2.1309 4.0361 0.3945 27 1 1.1901 5.2927 2.2248 28 1 1.5676 4.0074 3.4112 29 1 -0.6341 4.1732 1.5356 30 1 -0.3025 2.2478 0.5057 31 1 -0.2299 1.4785 2.1142 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259881085.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:46 Heat of formation + Delta-G solvation = -28.802810 kcal Electronic energy + Delta-G solvation = -11756.768621 eV Core-core repulsion = 9843.707861 eV Total energy + Delta-G solvation = -1913.060760 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.00218 -36.33826 -34.06512 -31.41949 -29.30737 -28.75751 -24.80040 -22.27621 -22.00571 -20.63529 -18.92085 -17.42314 -16.53078 -16.03497 -15.26196 -14.81769 -14.45663 -14.20042 -14.01501 -13.57593 -13.31134 -12.72268 -12.56576 -12.46921 -12.11772 -11.74190 -11.64040 -11.47933 -11.30025 -11.02298 -10.71187 -10.54223 -9.33826 -8.28086 -6.26024 1.33374 1.36887 1.47201 2.37126 3.07134 3.42912 3.92260 3.96574 4.27366 4.41072 4.48914 4.61606 4.65170 4.70484 4.77928 4.95333 5.01073 5.04769 5.22542 5.25368 5.29310 5.41078 5.51455 5.57948 5.71178 5.89260 5.95706 6.36879 6.60430 6.80077 7.37536 8.88802 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.044682 B = 0.015297 C = 0.012930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.500273 B = 1829.971377 C = 2164.967882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.123 4.123 3 C 0.030 3.970 4 H 0.021 0.979 5 C -0.511 4.511 6 H 0.029 0.971 7 C 0.012 3.988 8 N -0.950 5.950 9 Si 0.925 3.075 10 H -0.279 1.279 11 H -0.293 1.293 12 H -0.221 1.221 13 C -0.088 4.088 14 H 0.053 0.947 15 C -0.135 4.135 16 C 0.052 3.948 17 N -0.690 5.690 18 C 0.053 3.947 19 H 0.050 0.950 20 H 0.054 0.946 21 H 0.079 0.921 22 H 0.044 0.956 23 H 0.035 0.965 24 H 0.262 0.738 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.344 0.656 30 H 0.063 0.937 31 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.249 3.407 3.189 13.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.161 4.161 3 C 0.011 3.989 4 H 0.039 0.961 5 C -0.549 4.549 6 H 0.048 0.952 7 C -0.184 4.184 8 N -0.590 5.590 9 Si 0.749 3.251 10 H -0.205 1.205 11 H -0.220 1.220 12 H -0.144 1.144 13 C -0.107 4.107 14 H 0.071 0.929 15 C -0.175 4.175 16 C -0.077 4.077 17 N -0.318 5.318 18 C -0.076 4.076 19 H 0.069 0.931 20 H 0.073 0.927 21 H 0.098 0.902 22 H 0.063 0.937 23 H 0.054 0.946 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.101 0.899 28 H 0.091 0.909 29 H 0.160 0.840 30 H 0.082 0.918 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.240 3.094 3.758 13.173 hybrid contribution 0.973 -0.029 -1.777 2.026 sum -11.268 3.065 1.981 11.844 Atomic orbital electron populations 1.22224 0.95055 1.01371 1.02773 1.21884 0.95872 0.98349 0.99978 1.19073 0.93430 0.92842 0.93566 0.96098 1.21312 0.92117 1.41336 1.00140 0.95238 1.25846 0.95973 0.94510 1.02096 1.70125 1.14425 1.47165 1.27295 0.86223 0.82066 0.77672 0.79144 1.20499 1.21977 1.14368 1.22198 0.95201 0.95773 0.97535 0.92876 1.22965 0.99312 0.95946 0.99228 1.22858 0.87955 0.98336 0.98566 1.61821 1.15485 1.05053 1.49483 1.23068 0.94729 0.91786 0.97995 0.93122 0.92740 0.90200 0.93671 0.94594 0.92904 0.93021 0.92611 0.89933 0.90941 0.84005 0.91814 0.90231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.91 8.38 71.98 0.60 -4.30 16 2 C -0.12 -5.03 4.61 30.59 0.14 -4.89 16 3 C 0.03 1.34 0.95 -11.54 -0.01 1.33 16 4 H 0.02 0.94 6.66 -2.39 -0.02 0.92 16 5 C -0.51 -28.74 8.40 25.60 0.22 -28.53 16 6 H 0.03 1.85 7.65 -2.91 -0.02 1.83 16 7 C 0.01 0.72 5.33 84.66 0.45 1.17 16 8 N -0.95 -59.89 13.96 21.45 0.30 -59.59 16 9 Si 0.92 43.74 25.78 68.60 1.77 45.51 16 10 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 11 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 12 H -0.22 -9.35 5.47 99.48 0.54 -8.81 16 13 C -0.09 -3.35 2.44 -9.61 -0.02 -3.38 16 14 H 0.05 2.17 8.14 -2.39 -0.02 2.16 16 15 C -0.14 -4.93 5.75 31.98 0.18 -4.75 16 16 C 0.05 1.47 7.57 86.77 0.66 2.12 16 17 N -0.69 -18.83 7.39 -504.44 -3.73 -22.56 16 18 C 0.05 1.60 5.21 86.65 0.45 2.05 16 19 H 0.05 1.53 7.46 -2.39 -0.02 1.51 16 20 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 21 H 0.08 2.21 4.68 -2.39 -0.01 2.20 16 22 H 0.04 1.87 8.13 -2.39 -0.02 1.85 16 23 H 0.04 1.58 4.94 -2.39 -0.01 1.57 16 24 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 25 H 0.05 2.05 7.95 -2.39 -0.02 2.03 16 26 H 0.06 2.11 8.05 -2.38 -0.02 2.09 16 27 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 28 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.34 7.92 8.91 -89.69 -0.80 7.12 16 30 H 0.06 1.85 6.05 -2.38 -0.01 1.83 16 31 H 0.08 2.29 6.62 -2.39 -0.02 2.28 16 Total: -1.00 -63.68 233.43 1.15 -62.53 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: 0.14 Total: 13.29 kcal Atomic # 6 Polarization: -41.85 SS G_CDS: 2.67 Total: -39.18 kcal Atomic # 7 Polarization: -78.72 SS G_CDS: -3.43 Total: -82.15 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.77 Total: 45.51 kcal Total: -63.68 1.15 -62.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259881085.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.729 kcal (2) G-P(sol) polarization free energy of solvation -63.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds