Wall clock time and date at job start Mon Mar 30 2020 02:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47165 * 2 1 4 4 N 1.46904 * 109.47268 * 239.99779 * 2 1 3 5 5 C 1.46896 * 110.99988 * 275.00435 * 4 2 1 6 6 H 1.09000 * 109.47026 * 324.99879 * 5 4 2 7 7 C 1.50696 * 109.46867 * 204.99663 * 5 4 2 8 8 H 1.08001 * 120.00614 * 265.52456 * 7 5 4 9 9 C 1.37879 * 120.00169 * 85.53293 * 7 5 4 10 10 N 1.31519 * 119.99898 * 5.61267 * 9 7 5 11 11 Si 1.86794 * 120.00356 * 185.62169 * 9 7 5 12 12 H 1.48500 * 109.47388 * 59.99232 * 11 9 7 13 13 H 1.48501 * 109.47334 * 179.97438 * 11 9 7 14 14 H 1.48507 * 109.47081 * 299.99520 * 11 9 7 15 15 C 1.53002 * 109.47225 * 84.99560 * 5 4 2 16 16 C 1.52998 * 117.49940 * 243.34021 * 15 5 4 17 17 C 1.53004 * 117.49647 * 174.68046 * 15 5 4 18 18 H 1.09007 * 109.47279 * 300.00226 * 1 2 3 19 19 H 1.09007 * 109.47416 * 59.99945 * 1 2 3 20 20 H 1.09000 * 109.47778 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.46909 * 120.00063 * 2 1 3 22 22 H 1.08990 * 109.47295 * 59.99957 * 3 2 1 23 23 H 1.09003 * 109.46995 * 180.02562 * 3 2 1 24 24 H 1.09001 * 109.46811 * 299.99625 * 3 2 1 25 25 H 1.00901 * 110.99434 * 38.95629 * 4 2 1 26 26 H 0.97001 * 120.00033 * 179.97438 * 10 9 7 27 27 H 1.08997 * 115.54802 * 29.01832 * 15 5 4 28 28 H 1.09008 * 117.49892 * 359.97438 * 16 15 5 29 29 H 1.08994 * 117.49762 * 145.02008 * 16 15 5 30 30 H 1.08997 * 117.49881 * 214.98196 * 17 15 5 31 31 H 1.08995 * 117.49800 * 0.02562 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 2.0824 -2.1438 -0.9806 6 1 2.3647 -2.3435 0.0530 7 6 3.1064 -2.7476 -1.9068 8 1 2.7997 -3.1561 -2.8583 9 6 4.4349 -2.7786 -1.5394 10 7 4.7943 -2.3832 -0.3376 11 14 5.7246 -3.3820 -2.7484 12 1 5.7074 -2.5236 -3.9601 13 1 7.0661 -3.3166 -2.1150 14 1 5.4256 -4.7852 -3.1318 15 6 0.7116 -2.7619 -1.2634 16 6 -0.0131 -3.4369 -0.0972 17 6 0.6004 -4.2870 -1.2126 18 1 -0.3634 0.5139 0.8900 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 1.8932 -0.5139 0.8900 22 1 1.6767 1.9563 0.8899 23 1 3.1300 1.4425 -0.0005 24 1 1.6766 1.9563 -0.8900 25 1 1.4495 -0.4722 -2.0022 26 1 5.7289 -2.4054 -0.0790 27 1 0.1019 -2.2371 -1.9989 28 1 0.4869 -3.4410 0.8715 29 1 -1.0996 -3.3564 -0.0656 30 1 -0.0828 -4.7655 -1.9143 31 1 1.5036 -4.8499 -0.9773 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259930680.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:35 Heat of formation + Delta-G solvation = 13.474415 kcal Electronic energy + Delta-G solvation = -11585.113258 eV Core-core repulsion = 9673.885776 eV Total energy + Delta-G solvation = -1911.227482 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.58480 -34.96983 -32.56350 -29.93369 -26.47083 -25.81266 -22.73631 -21.55181 -19.94142 -19.26501 -16.26730 -15.16489 -14.54199 -14.06210 -13.69332 -13.38740 -12.64492 -12.23451 -11.65959 -11.58647 -11.36018 -11.02088 -10.77161 -10.71709 -10.65532 -10.37804 -10.03369 -9.83079 -9.54242 -9.20361 -8.59938 -8.32687 -6.90061 -5.89512 -3.94002 3.39135 3.43788 3.47055 4.50024 4.77146 5.20942 5.59990 5.69521 5.74573 5.85162 5.90164 6.04665 6.14144 6.27202 6.28265 6.40294 6.45522 6.58825 6.62163 6.76419 6.91048 6.97602 7.05801 7.13080 7.53183 7.97897 8.34244 8.79493 8.85263 9.18900 9.71752 11.19039 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.033804 B = 0.015972 C = 0.011905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.107595 B = 1752.621158 C = 2351.374332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.078 3.922 3 C -0.134 4.134 4 N -0.661 5.661 5 C 0.236 3.764 6 H 0.061 0.939 7 C -0.499 4.499 8 H 0.051 0.949 9 C 0.078 3.922 10 N -0.880 5.880 11 Si 0.887 3.113 12 H -0.277 1.277 13 H -0.290 1.290 14 H -0.279 1.279 15 C -0.153 4.153 16 C -0.201 4.201 17 C -0.167 4.167 18 H 0.041 0.959 19 H 0.044 0.956 20 H 0.062 0.938 21 H 0.069 0.931 22 H 0.039 0.961 23 H 0.058 0.942 24 H 0.042 0.958 25 H 0.313 0.687 26 H 0.259 0.741 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.761 1.859 0.515 7.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.032 4.032 3 C -0.192 4.192 4 N -0.290 5.290 5 C 0.129 3.871 6 H 0.079 0.921 7 C -0.538 4.538 8 H 0.069 0.931 9 C -0.126 4.126 10 N -0.518 5.518 11 Si 0.715 3.285 12 H -0.203 1.203 13 H -0.215 1.215 14 H -0.205 1.205 15 C -0.173 4.173 16 C -0.238 4.238 17 C -0.205 4.205 18 H 0.061 0.939 19 H 0.063 0.937 20 H 0.081 0.919 21 H 0.087 0.913 22 H 0.058 0.942 23 H 0.078 0.922 24 H 0.061 0.939 25 H 0.130 0.870 26 H 0.068 0.932 27 H 0.096 0.904 28 H 0.104 0.896 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.915 1.995 0.802 6.294 hybrid contribution -0.320 -0.498 -0.691 0.910 sum -6.236 1.497 0.110 6.414 Atomic orbital electron populations 1.22717 0.99339 1.02010 1.00283 1.21532 0.90735 0.94826 0.96154 1.21745 1.01783 0.96255 0.99395 1.61389 1.54254 1.10910 1.02443 1.19055 0.86862 0.82351 0.98834 0.92129 1.20846 0.91640 1.37588 1.03690 0.93112 1.24924 0.98469 0.94470 0.94709 1.69933 1.16775 1.47009 1.18084 0.86766 0.80873 0.79008 0.81808 1.20280 1.21538 1.20525 1.23500 1.00758 0.94931 0.98148 1.22974 0.97934 1.08100 0.94754 1.22729 1.02058 0.95067 1.00631 0.93944 0.93738 0.91864 0.91294 0.94218 0.92239 0.93857 0.87000 0.93168 0.90391 0.89599 0.90850 0.90858 0.88348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.08 8.92 37.15 0.33 -2.75 16 2 C 0.08 1.55 3.20 -67.71 -0.22 1.33 16 3 C -0.13 -2.38 9.52 37.16 0.35 -2.02 16 4 N -0.66 -15.01 6.04 -100.96 -0.61 -15.62 16 5 C 0.24 5.75 2.25 -68.87 -0.16 5.60 16 6 H 0.06 1.67 6.53 -51.93 -0.34 1.33 16 7 C -0.50 -13.58 8.05 -34.44 -0.28 -13.86 16 8 H 0.05 1.38 7.82 -52.49 -0.41 0.97 16 9 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 10 N -0.88 -25.68 12.91 55.43 0.72 -24.96 16 11 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 C -0.15 -3.16 3.69 -90.62 -0.33 -3.50 16 16 C -0.20 -3.69 8.84 -26.69 -0.24 -3.92 16 17 C -0.17 -3.26 9.78 -26.69 -0.26 -3.52 16 18 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 19 H 0.04 0.70 8.13 -51.93 -0.42 0.27 16 20 H 0.06 1.09 5.08 -51.93 -0.26 0.82 16 21 H 0.07 1.51 7.43 -51.93 -0.39 1.12 16 22 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 24 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.31 6.68 8.04 -39.29 -0.32 6.36 16 26 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 27 H 0.08 1.55 7.87 -51.93 -0.41 1.14 16 28 H 0.09 1.64 8.03 -51.92 -0.42 1.22 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.10 2.09 8.00 -51.93 -0.42 1.68 16 LS Contribution 253.59 15.07 3.82 3.82 Total: -1.00 -28.09 253.59 -7.03 -35.12 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -5.05 Total: 5.60 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: -0.89 Total: -20.57 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: 0.11 Total: -40.57 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -28.09 -7.03 -35.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259930680.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.599 kcal (2) G-P(sol) polarization free energy of solvation -28.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds