Wall clock time and date at job start Mon Mar 30 2020 02:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47165 * 2 1 4 4 N 1.46904 * 109.47268 * 239.99779 * 2 1 3 5 5 C 1.46896 * 110.99988 * 275.00435 * 4 2 1 6 6 H 1.09000 * 109.47026 * 324.99879 * 5 4 2 7 7 C 1.50696 * 109.46867 * 204.99663 * 5 4 2 8 8 H 1.08001 * 120.00614 * 265.52456 * 7 5 4 9 9 C 1.37879 * 120.00169 * 85.53293 * 7 5 4 10 10 N 1.31519 * 119.99898 * 5.61267 * 9 7 5 11 11 Si 1.86794 * 120.00356 * 185.62169 * 9 7 5 12 12 H 1.48500 * 109.47388 * 59.99232 * 11 9 7 13 13 H 1.48501 * 109.47334 * 179.97438 * 11 9 7 14 14 H 1.48507 * 109.47081 * 299.99520 * 11 9 7 15 15 C 1.53002 * 109.47225 * 84.99560 * 5 4 2 16 16 C 1.52998 * 117.49940 * 243.34021 * 15 5 4 17 17 C 1.53004 * 117.49647 * 174.68046 * 15 5 4 18 18 H 1.09007 * 109.47279 * 300.00226 * 1 2 3 19 19 H 1.09007 * 109.47416 * 59.99945 * 1 2 3 20 20 H 1.09000 * 109.47778 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.46909 * 120.00063 * 2 1 3 22 22 H 1.08990 * 109.47295 * 59.99957 * 3 2 1 23 23 H 1.09003 * 109.46995 * 180.02562 * 3 2 1 24 24 H 1.09001 * 109.46811 * 299.99625 * 3 2 1 25 25 H 1.00901 * 110.99434 * 38.95629 * 4 2 1 26 26 H 0.97001 * 120.00033 * 179.97438 * 10 9 7 27 27 H 1.08997 * 115.54802 * 29.01832 * 15 5 4 28 28 H 1.09008 * 117.49892 * 359.97438 * 16 15 5 29 29 H 1.08994 * 117.49762 * 145.02008 * 16 15 5 30 30 H 1.08997 * 117.49881 * 214.98196 * 17 15 5 31 31 H 1.08995 * 117.49800 * 0.02562 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 2.0824 -2.1438 -0.9806 6 1 2.3647 -2.3435 0.0530 7 6 3.1064 -2.7476 -1.9068 8 1 2.7997 -3.1561 -2.8583 9 6 4.4349 -2.7786 -1.5394 10 7 4.7943 -2.3832 -0.3376 11 14 5.7246 -3.3820 -2.7484 12 1 5.7074 -2.5236 -3.9601 13 1 7.0661 -3.3166 -2.1150 14 1 5.4256 -4.7852 -3.1318 15 6 0.7116 -2.7619 -1.2634 16 6 -0.0131 -3.4369 -0.0972 17 6 0.6004 -4.2870 -1.2126 18 1 -0.3634 0.5139 0.8900 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 1.8932 -0.5139 0.8900 22 1 1.6767 1.9563 0.8899 23 1 3.1300 1.4425 -0.0005 24 1 1.6766 1.9563 -0.8900 25 1 1.4495 -0.4722 -2.0022 26 1 5.7289 -2.4054 -0.0790 27 1 0.1019 -2.2371 -1.9989 28 1 0.4869 -3.4410 0.8715 29 1 -1.0996 -3.3564 -0.0656 30 1 -0.0828 -4.7655 -1.9143 31 1 1.5036 -4.8499 -0.9773 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259930680.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:34 Heat of formation + Delta-G solvation = -4.160102 kcal Electronic energy + Delta-G solvation = -11585.877948 eV Core-core repulsion = 9673.885776 eV Total energy + Delta-G solvation = -1911.992172 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.26633 -36.54105 -34.60320 -31.70424 -27.93153 -27.71107 -24.59643 -23.08486 -21.59988 -20.96428 -18.34103 -16.76587 -16.52267 -15.76222 -15.20729 -15.05956 -14.33476 -13.83761 -13.37841 -13.20637 -12.97617 -12.82543 -12.51059 -12.46249 -12.27359 -12.01474 -11.63931 -11.61888 -11.13877 -11.07594 -10.55348 -10.27838 -8.64355 -8.00284 -6.11708 1.43502 1.46275 1.52481 2.48371 3.16380 3.23404 3.94671 4.11748 4.23174 4.32664 4.39180 4.53086 4.66720 4.78412 4.86310 4.87484 5.03093 5.07174 5.17618 5.22969 5.30228 5.43170 5.46995 5.57696 5.64734 5.82652 6.33091 6.86957 7.05594 7.24418 7.57392 9.06207 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.033804 B = 0.015972 C = 0.011905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.107595 B = 1752.621158 C = 2351.374332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.077 3.923 3 C -0.127 4.127 4 N -0.680 5.680 5 C 0.243 3.757 6 H 0.018 0.982 7 C -0.508 4.508 8 H 0.047 0.953 9 C 0.026 3.974 10 N -0.916 5.916 11 Si 0.947 3.053 12 H -0.274 1.274 13 H -0.289 1.289 14 H -0.271 1.271 15 C -0.166 4.166 16 C -0.177 4.177 17 C -0.169 4.169 18 H 0.063 0.937 19 H 0.059 0.941 20 H 0.057 0.943 21 H 0.036 0.964 22 H 0.066 0.934 23 H 0.032 0.968 24 H 0.057 0.943 25 H 0.322 0.678 26 H 0.256 0.744 27 H 0.093 0.907 28 H 0.072 0.928 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.367 2.186 -0.218 8.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.033 4.033 3 C -0.185 4.185 4 N -0.310 5.310 5 C 0.135 3.865 6 H 0.037 0.963 7 C -0.547 4.547 8 H 0.065 0.935 9 C -0.174 4.174 10 N -0.555 5.555 11 Si 0.773 3.227 12 H -0.200 1.200 13 H -0.215 1.215 14 H -0.197 1.197 15 C -0.186 4.186 16 C -0.214 4.214 17 C -0.207 4.207 18 H 0.082 0.918 19 H 0.078 0.922 20 H 0.076 0.924 21 H 0.055 0.945 22 H 0.085 0.915 23 H 0.051 0.949 24 H 0.076 0.924 25 H 0.139 0.861 26 H 0.065 0.935 27 H 0.111 0.889 28 H 0.091 0.909 29 H 0.125 0.875 30 H 0.120 0.880 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.535 2.320 0.060 7.884 hybrid contribution 0.143 -0.585 -0.436 0.744 sum -7.392 1.736 -0.376 7.602 Atomic orbital electron populations 1.22544 0.96283 1.02276 1.02045 1.21513 0.93204 0.95094 0.93508 1.21674 1.00052 0.95298 1.01437 1.61113 1.55679 1.10148 1.04024 1.18714 0.88469 0.83626 0.95651 0.96340 1.21221 0.92609 1.37171 1.03730 0.93504 1.25653 1.00543 0.95074 0.96137 1.70075 1.16798 1.48906 1.19738 0.85811 0.78394 0.78800 0.79663 1.19973 1.21533 1.19651 1.23263 0.99410 0.95613 1.00286 1.22966 0.99470 1.05656 0.93297 1.22745 1.01853 0.94160 1.01956 0.91847 0.92219 0.92362 0.94521 0.91514 0.94896 0.92392 0.86084 0.93516 0.88851 0.90947 0.87452 0.88032 0.91016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.31 8.92 71.98 0.64 -4.67 16 2 C 0.08 3.01 3.20 44.91 0.14 3.15 16 3 C -0.13 -4.34 9.52 71.98 0.69 -3.66 16 4 N -0.68 -30.85 6.04 -473.31 -2.86 -33.71 16 5 C 0.24 12.01 2.25 44.17 0.10 12.11 16 6 H 0.02 1.06 6.53 -2.39 -0.02 1.05 16 7 C -0.51 -28.04 8.05 25.60 0.21 -27.84 16 8 H 0.05 2.56 7.82 -2.91 -0.02 2.53 16 9 C 0.03 1.47 5.45 84.65 0.46 1.93 16 10 N -0.92 -55.06 12.91 21.45 0.28 -54.79 16 11 Si 0.95 44.90 29.54 68.60 2.03 46.93 16 12 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 13 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 14 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 15 C -0.17 -6.64 3.69 -10.79 -0.04 -6.68 16 16 C -0.18 -6.16 8.84 30.62 0.27 -5.89 16 17 C -0.17 -6.38 9.78 30.62 0.30 -6.08 16 18 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 19 H 0.06 1.66 8.13 -2.38 -0.02 1.64 16 20 H 0.06 1.85 5.08 -2.39 -0.01 1.83 16 21 H 0.04 1.64 7.43 -2.38 -0.02 1.63 16 22 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 23 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.32 13.39 8.04 -89.69 -0.72 12.67 16 26 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 27 H 0.09 3.47 7.87 -2.39 -0.02 3.45 16 28 H 0.07 2.72 8.03 -2.38 -0.02 2.70 16 29 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 30 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 31 H 0.07 3.07 8.00 -2.39 -0.02 3.06 16 Total: -1.00 -61.01 253.59 2.58 -58.42 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: 0.37 Total: 20.76 kcal Atomic # 6 Polarization: -40.40 SS G_CDS: 2.77 Total: -37.63 kcal Atomic # 7 Polarization: -85.91 SS G_CDS: -2.58 Total: -88.49 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -61.01 2.58 -58.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259930680.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.265 kcal (2) G-P(sol) polarization free energy of solvation -61.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds