Wall clock time and date at job start Mon Mar 30 2020 01:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.57832 * 2 1 4 4 C 1.53129 * 109.48966 * 239.82122 * 2 1 3 5 5 C 1.53036 * 109.30712 * 297.71179 * 4 2 1 6 6 N 1.46849 * 109.52274 * 300.83936 * 5 4 2 7 7 C 1.46842 * 111.20050 * 61.74759 * 6 5 4 8 8 H 1.09009 * 109.46400 * 58.26507 * 7 6 5 9 9 C 1.50693 * 109.46675 * 178.24078 * 7 6 5 10 10 H 1.08000 * 120.00398 * 120.05446 * 9 7 6 11 11 C 1.37882 * 119.99967 * 300.05090 * 9 7 6 12 12 N 1.31516 * 119.99950 * 359.97438 * 11 9 7 13 13 Si 1.86794 * 120.00192 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47299 * 90.00119 * 13 11 9 15 15 H 1.48493 * 109.47191 * 209.99766 * 13 11 9 16 16 H 1.48500 * 109.47111 * 330.00182 * 13 11 9 17 17 C 1.53039 * 109.52266 * 298.25785 * 7 6 5 18 18 H 1.09006 * 109.46735 * 299.84068 * 1 2 3 19 19 H 1.09000 * 109.46901 * 59.83934 * 1 2 3 20 20 H 1.08994 * 109.47213 * 179.83872 * 1 2 3 21 21 H 1.08997 * 109.47583 * 180.15752 * 3 2 1 22 22 H 1.09002 * 109.47275 * 300.15983 * 3 2 1 23 23 H 1.09005 * 109.47239 * 60.15484 * 3 2 1 24 24 H 1.09000 * 109.46579 * 177.77537 * 4 2 1 25 25 H 1.08997 * 109.53656 * 57.69138 * 4 2 1 26 26 H 1.09001 * 109.45883 * 180.82826 * 5 4 2 27 27 H 1.09002 * 109.45657 * 60.85248 * 5 4 2 28 28 H 1.00903 * 110.99692 * 185.84337 * 6 5 4 29 29 H 0.96999 * 119.99810 * 179.97438 * 12 11 9 30 30 H 1.09002 * 109.50563 * 179.11883 * 17 7 6 31 31 H 1.09003 * 109.50107 * 299.19864 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0427 1.4415 0.0000 4 6 2.0409 -0.7257 -1.2479 5 6 1.5766 -2.1834 -1.2112 6 7 2.0932 -2.8327 0.0005 7 6 1.5775 -2.1829 1.2121 8 1 0.4879 -2.2170 1.2068 9 6 2.0963 -2.9050 2.4288 10 1 2.6969 -2.3773 3.1548 11 6 1.8041 -4.2396 2.6152 12 7 1.0722 -4.8822 1.7314 13 14 2.4466 -5.1345 4.1237 14 1 1.4579 -5.0199 5.2258 15 1 2.6588 -6.5673 3.7962 16 1 3.7338 -4.5278 4.5483 17 6 2.0417 -0.7251 1.2478 18 1 -0.3633 0.5114 0.8915 19 1 -0.3633 0.5163 -0.8886 20 1 -0.3633 -1.0276 -0.0029 21 1 3.1327 1.4395 -0.0028 22 1 1.6780 1.9568 -0.8886 23 1 1.6826 1.9552 0.8914 24 1 3.1302 -0.6911 -1.2678 25 1 1.6450 -0.2400 -2.1397 26 1 1.9513 -2.7062 -2.0912 27 1 0.4871 -2.2174 -1.2050 28 1 1.8807 -3.8191 0.0007 29 1 0.8670 -5.8211 1.8624 30 1 1.6458 -0.2388 2.1394 31 1 3.1310 -0.6905 1.2678 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260211202.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:44 Heat of formation + Delta-G solvation = -23.665582 kcal Electronic energy + Delta-G solvation = -11827.117163 eV Core-core repulsion = 9914.279170 eV Total energy + Delta-G solvation = -1912.837993 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.48567 -33.76919 -31.93152 -29.79336 -26.81181 -26.48261 -24.91887 -21.58972 -20.35109 -17.40828 -16.41135 -15.01043 -14.28906 -14.01365 -13.65290 -13.27219 -13.17247 -12.29607 -11.91139 -11.61709 -11.36978 -11.14874 -10.90710 -10.80764 -10.70558 -10.30335 -10.18379 -9.89532 -9.57988 -9.13536 -8.81519 -8.53947 -6.72689 -6.04785 -4.07243 3.31652 3.38391 3.42831 4.44207 5.20462 5.38271 5.45729 5.50927 5.87948 6.03044 6.10491 6.20255 6.25587 6.28397 6.34532 6.42894 6.55258 6.64798 6.73253 6.82500 6.92690 7.04492 7.10865 7.18578 7.64872 7.93919 8.28105 8.76401 9.07286 9.22752 9.60469 11.05231 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.062268 B = 0.012573 C = 0.011581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.560203 B = 2226.508395 C = 2417.094463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.070 4.070 3 C -0.136 4.136 4 C -0.099 4.099 5 C 0.054 3.946 6 N -0.685 5.685 7 C 0.214 3.786 8 H -0.002 1.002 9 C -0.503 4.503 10 H 0.058 0.942 11 C 0.064 3.936 12 N -0.903 5.903 13 Si 0.897 3.103 14 H -0.282 1.282 15 H -0.287 1.287 16 H -0.274 1.274 17 C -0.092 4.092 18 H 0.047 0.953 19 H 0.041 0.959 20 H 0.063 0.937 21 H 0.050 0.950 22 H 0.044 0.956 23 H 0.048 0.952 24 H 0.061 0.939 25 H 0.046 0.954 26 H 0.048 0.952 27 H 0.014 0.986 28 H 0.361 0.639 29 H 0.263 0.737 30 H 0.046 0.954 31 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.052 6.980 -3.762 7.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.071 4.071 3 C -0.194 4.194 4 C -0.137 4.137 5 C -0.077 4.077 6 N -0.323 5.323 7 C 0.107 3.893 8 H 0.016 0.984 9 C -0.542 4.542 10 H 0.077 0.923 11 C -0.137 4.137 12 N -0.544 5.544 13 Si 0.725 3.275 14 H -0.208 1.208 15 H -0.213 1.213 16 H -0.199 1.199 17 C -0.130 4.130 18 H 0.066 0.934 19 H 0.060 0.940 20 H 0.081 0.919 21 H 0.069 0.931 22 H 0.063 0.937 23 H 0.067 0.933 24 H 0.079 0.921 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.032 0.968 28 H 0.185 0.815 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.456 7.150 -3.790 8.105 hybrid contribution -0.640 -0.891 0.736 1.321 sum -0.183 6.259 -3.055 6.967 Atomic orbital electron populations 1.21925 0.95589 1.02138 1.00062 1.20647 0.95020 0.94254 0.97138 1.21848 1.00602 0.96378 1.00531 1.21573 1.00564 0.95665 0.95872 1.21829 0.96143 0.94481 0.95206 1.60758 1.61885 1.09363 1.00245 1.19016 0.92980 0.88971 0.88350 0.98415 1.21247 1.32325 0.95176 1.05450 0.92334 1.25011 0.94532 0.97598 0.96538 1.69677 1.38718 1.10360 1.35665 0.86515 0.79292 0.78827 0.82847 1.20836 1.21252 1.19858 1.21670 1.00022 0.97203 0.94102 0.93387 0.94021 0.91859 0.93084 0.93689 0.93259 0.92074 0.93534 0.93335 0.96825 0.81503 0.92734 0.93483 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 7.90 37.16 0.29 -2.17 16 2 C -0.07 -1.29 0.78 -154.38 -0.12 -1.41 16 3 C -0.14 -2.08 8.49 37.15 0.32 -1.76 16 4 C -0.10 -1.80 4.88 -26.65 -0.13 -1.93 16 5 C 0.05 1.12 6.30 -3.83 -0.02 1.10 16 6 N -0.69 -17.04 6.49 -107.99 -0.70 -17.74 16 7 C 0.21 5.50 2.15 -68.88 -0.15 5.36 16 8 H 0.00 -0.05 6.52 -51.92 -0.34 -0.38 16 9 C -0.50 -14.11 8.76 -34.44 -0.30 -14.41 16 10 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 11 C 0.06 1.78 5.32 -17.82 -0.09 1.69 16 12 N -0.90 -25.75 11.48 55.43 0.64 -25.11 16 13 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 17 C -0.09 -2.01 4.10 -26.65 -0.11 -2.12 16 18 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 19 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 20 H 0.06 1.26 4.92 -51.93 -0.26 1.00 16 21 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 22 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.01 0.29 6.51 -51.93 -0.34 -0.05 16 28 H 0.36 9.73 6.65 -39.29 -0.26 9.47 16 29 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 239.59 15.07 3.61 3.61 Total: -1.00 -28.10 239.59 -6.76 -34.86 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -4.96 Total: 3.55 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: -0.32 Total: -15.66 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: -0.06 Total: -42.85 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -28.10 -6.76 -34.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260211202.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.192 kcal (2) G-P(sol) polarization free energy of solvation -28.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds