Wall clock time and date at job start Mon Mar 30 2020 01:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.57832 * 2 1 4 4 C 1.53129 * 109.48966 * 239.82122 * 2 1 3 5 5 C 1.53036 * 109.30712 * 297.71179 * 4 2 1 6 6 N 1.46849 * 109.52274 * 300.83936 * 5 4 2 7 7 C 1.46842 * 111.20050 * 61.74759 * 6 5 4 8 8 H 1.09009 * 109.46400 * 58.26507 * 7 6 5 9 9 C 1.50693 * 109.46675 * 178.24078 * 7 6 5 10 10 H 1.08000 * 120.00398 * 120.05446 * 9 7 6 11 11 C 1.37882 * 119.99967 * 300.05090 * 9 7 6 12 12 N 1.31516 * 119.99950 * 359.97438 * 11 9 7 13 13 Si 1.86794 * 120.00192 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47299 * 90.00119 * 13 11 9 15 15 H 1.48493 * 109.47191 * 209.99766 * 13 11 9 16 16 H 1.48500 * 109.47111 * 330.00182 * 13 11 9 17 17 C 1.53039 * 109.52266 * 298.25785 * 7 6 5 18 18 H 1.09006 * 109.46735 * 299.84068 * 1 2 3 19 19 H 1.09000 * 109.46901 * 59.83934 * 1 2 3 20 20 H 1.08994 * 109.47213 * 179.83872 * 1 2 3 21 21 H 1.08997 * 109.47583 * 180.15752 * 3 2 1 22 22 H 1.09002 * 109.47275 * 300.15983 * 3 2 1 23 23 H 1.09005 * 109.47239 * 60.15484 * 3 2 1 24 24 H 1.09000 * 109.46579 * 177.77537 * 4 2 1 25 25 H 1.08997 * 109.53656 * 57.69138 * 4 2 1 26 26 H 1.09001 * 109.45883 * 180.82826 * 5 4 2 27 27 H 1.09002 * 109.45657 * 60.85248 * 5 4 2 28 28 H 1.00903 * 110.99692 * 185.84337 * 6 5 4 29 29 H 0.96999 * 119.99810 * 179.97438 * 12 11 9 30 30 H 1.09002 * 109.50563 * 179.11883 * 17 7 6 31 31 H 1.09003 * 109.50107 * 299.19864 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0427 1.4415 0.0000 4 6 2.0409 -0.7257 -1.2479 5 6 1.5766 -2.1834 -1.2112 6 7 2.0932 -2.8327 0.0005 7 6 1.5775 -2.1829 1.2121 8 1 0.4879 -2.2170 1.2068 9 6 2.0963 -2.9050 2.4288 10 1 2.6969 -2.3773 3.1548 11 6 1.8041 -4.2396 2.6152 12 7 1.0722 -4.8822 1.7314 13 14 2.4466 -5.1345 4.1237 14 1 1.4579 -5.0199 5.2258 15 1 2.6588 -6.5673 3.7962 16 1 3.7338 -4.5278 4.5483 17 6 2.0417 -0.7251 1.2478 18 1 -0.3633 0.5114 0.8915 19 1 -0.3633 0.5163 -0.8886 20 1 -0.3633 -1.0276 -0.0029 21 1 3.1327 1.4395 -0.0028 22 1 1.6780 1.9568 -0.8886 23 1 1.6826 1.9552 0.8914 24 1 3.1302 -0.6911 -1.2678 25 1 1.6450 -0.2400 -2.1397 26 1 1.9513 -2.7062 -2.0912 27 1 0.4871 -2.2174 -1.2050 28 1 1.8807 -3.8191 0.0007 29 1 0.8670 -5.8211 1.8624 30 1 1.6458 -0.2388 2.1394 31 1 3.1310 -0.6905 1.2678 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260211202.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:44 Heat of formation + Delta-G solvation = -41.829514 kcal Electronic energy + Delta-G solvation = -11827.904810 eV Core-core repulsion = 9914.279170 eV Total energy + Delta-G solvation = -1913.625640 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.12394 -35.62723 -33.80858 -31.65430 -28.14903 -28.07074 -26.93048 -23.28212 -22.15779 -19.05063 -18.41677 -16.98342 -16.11168 -15.59635 -15.28614 -14.89184 -14.82136 -14.06456 -13.66733 -13.04061 -12.95973 -12.79640 -12.64579 -12.49494 -12.33617 -12.05803 -11.87938 -11.56360 -11.31834 -10.82256 -10.74428 -10.57691 -8.68937 -8.16544 -6.27829 1.40683 1.42166 1.52949 2.42398 3.09377 3.90497 3.97215 4.07352 4.23218 4.58222 4.61528 4.68983 4.81278 4.85364 4.96121 4.97593 5.04350 5.10348 5.17315 5.22835 5.33537 5.40652 5.52634 5.57301 5.70893 5.84118 6.23507 6.67693 7.04394 7.17612 7.44100 8.91796 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.062268 B = 0.012573 C = 0.011581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.560203 B = 2226.508395 C = 2417.094463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.071 4.071 3 C -0.129 4.129 4 C -0.094 4.094 5 C 0.049 3.951 6 N -0.695 5.695 7 C 0.215 3.785 8 H -0.035 1.035 9 C -0.532 4.532 10 H 0.053 0.947 11 C 0.018 3.982 12 N -0.926 5.926 13 Si 0.962 3.038 14 H -0.276 1.276 15 H -0.282 1.282 16 H -0.270 1.270 17 C -0.086 4.086 18 H 0.051 0.949 19 H 0.070 0.930 20 H 0.030 0.970 21 H 0.053 0.947 22 H 0.070 0.930 23 H 0.055 0.945 24 H 0.059 0.941 25 H 0.080 0.920 26 H 0.063 0.937 27 H 0.006 0.994 28 H 0.345 0.655 29 H 0.265 0.735 30 H 0.044 0.956 31 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.330 8.183 -4.208 9.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.071 4.071 3 C -0.186 4.186 4 C -0.131 4.131 5 C -0.081 4.081 6 N -0.330 5.330 7 C 0.107 3.893 8 H -0.018 1.018 9 C -0.571 4.571 10 H 0.071 0.929 11 C -0.181 4.181 12 N -0.567 5.567 13 Si 0.787 3.213 14 H -0.202 1.202 15 H -0.207 1.207 16 H -0.195 1.195 17 C -0.124 4.124 18 H 0.070 0.930 19 H 0.089 0.911 20 H 0.050 0.950 21 H 0.072 0.928 22 H 0.088 0.912 23 H 0.074 0.926 24 H 0.078 0.922 25 H 0.099 0.901 26 H 0.082 0.918 27 H 0.024 0.976 28 H 0.166 0.834 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.841 8.377 -4.244 9.428 hybrid contribution -0.790 -1.286 0.848 1.731 sum 0.051 7.091 -3.396 7.863 Atomic orbital electron populations 1.21869 0.95142 1.00542 1.01716 1.20662 0.95385 0.95963 0.95096 1.21766 1.00802 0.93923 1.02137 1.21567 1.00552 0.93753 0.97262 1.21989 0.95756 0.96406 0.93904 1.60758 1.62171 1.08563 1.01536 1.18937 0.90912 0.91225 0.88220 1.01805 1.21614 1.32777 0.96023 1.06660 0.92898 1.25783 0.94635 0.98303 0.99370 1.69795 1.39278 1.10573 1.37054 0.85503 0.78768 0.77581 0.79406 1.20153 1.20704 1.19477 1.21562 0.99276 0.95245 0.96321 0.92979 0.91103 0.95048 0.92772 0.91152 0.92630 0.92203 0.90149 0.91841 0.97594 0.83436 0.92610 0.93728 0.93679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.55 7.90 71.98 0.57 -3.98 16 2 C -0.07 -2.45 0.78 -52.10 -0.04 -2.49 16 3 C -0.13 -3.48 8.49 71.98 0.61 -2.87 16 4 C -0.09 -3.19 4.88 30.65 0.15 -3.04 16 5 C 0.05 2.02 6.30 86.32 0.54 2.57 16 6 N -0.70 -35.12 6.49 -495.56 -3.22 -38.33 16 7 C 0.22 11.30 2.15 44.19 0.09 11.39 16 8 H -0.04 -2.06 6.52 -2.38 -0.02 -2.08 16 9 C -0.53 -30.49 8.76 25.60 0.22 -30.26 16 10 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 11 C 0.02 1.00 5.32 84.66 0.45 1.45 16 12 N -0.93 -53.80 11.48 21.45 0.25 -53.56 16 13 Si 0.96 44.49 29.54 68.60 2.03 46.52 16 14 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 15 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 16 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 17 C -0.09 -3.74 4.10 30.65 0.13 -3.62 16 18 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 19 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 20 H 0.03 1.24 4.92 -2.39 -0.01 1.23 16 21 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 22 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 24 H 0.06 2.06 8.14 -2.39 -0.02 2.05 16 25 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.01 0.25 6.51 -2.39 -0.02 0.24 16 28 H 0.34 19.07 6.65 -89.69 -0.60 18.48 16 29 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 30 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -60.67 239.59 2.28 -58.39 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 0.49 Total: 17.84 kcal Atomic # 6 Polarization: -33.58 SS G_CDS: 2.73 Total: -30.85 kcal Atomic # 7 Polarization: -88.92 SS G_CDS: -2.97 Total: -91.89 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -60.67 2.28 -58.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260211202.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.557 kcal (2) G-P(sol) polarization free energy of solvation -60.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds