Wall clock time and date at job start Mon Mar 30 2020 02:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47117 * 2 1 4 4 H 1.09003 * 109.47384 * 305.56689 * 3 2 1 5 5 C 1.50700 * 109.47212 * 65.56870 * 3 2 1 6 6 H 1.07999 * 120.00028 * 55.25371 * 5 3 2 7 7 C 1.37872 * 119.99857 * 235.25098 * 5 3 2 8 8 N 1.31514 * 120.00110 * 5.65556 * 7 5 3 9 9 Si 1.86804 * 120.00035 * 185.65648 * 7 5 3 10 10 H 1.48495 * 109.47126 * 90.00011 * 9 7 5 11 11 H 1.48497 * 109.47222 * 210.00311 * 9 7 5 12 12 H 1.48497 * 109.46987 * 330.00366 * 9 7 5 13 13 C 1.53003 * 109.47114 * 185.57017 * 3 2 1 14 14 H 1.09004 * 112.74328 * 308.73035 * 13 3 2 15 15 C 1.53699 * 113.54129 * 177.90867 * 13 3 2 16 16 C 1.53513 * 83.51484 * 219.20197 * 15 13 3 17 17 N 1.47480 * 113.47690 * 79.50201 * 13 3 2 18 18 C 1.46901 * 111.00146 * 253.53127 * 17 13 3 19 19 H 1.09005 * 109.47075 * 174.44044 * 1 2 3 20 20 H 1.09002 * 109.46799 * 294.43327 * 1 2 3 21 21 H 1.08996 * 109.47301 * 54.43847 * 1 2 3 22 22 H 1.08997 * 109.46986 * 239.99634 * 2 1 3 23 23 H 1.09005 * 109.47092 * 120.00235 * 2 1 3 24 24 H 0.97000 * 119.99992 * 179.97438 * 8 7 5 25 25 H 1.09001 * 114.22629 * 105.57612 * 15 13 3 26 26 H 1.09002 * 114.16664 * 332.82091 * 15 13 3 27 27 H 1.08999 * 113.47365 * 271.22357 * 16 15 13 28 28 H 1.08996 * 113.47605 * 140.81153 * 16 15 13 29 29 H 1.09006 * 109.46777 * 345.55660 * 18 17 13 30 30 H 1.08995 * 109.47166 * 105.55792 * 18 17 13 31 31 H 1.09002 * 109.47230 * 225.55903 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5976 1.9843 -0.8359 5 6 1.6534 2.1119 1.2936 6 1 1.9377 1.6693 2.2368 7 6 0.9368 3.2896 1.2730 8 7 0.4947 3.7705 0.1315 9 14 0.5937 4.2023 2.8664 10 1 1.6925 5.1653 3.1316 11 1 -0.6912 4.9373 2.7491 12 1 0.5072 3.2296 3.9851 13 6 3.5636 1.4447 -0.1400 14 1 4.0541 0.7913 0.5816 15 6 4.1723 2.8547 -0.2018 16 6 5.0954 2.2211 -1.2522 17 7 4.0266 1.2423 -1.5255 18 6 4.5809 -0.1064 -1.7037 19 1 -0.3633 -1.0229 -0.0996 20 1 -0.3633 0.4251 0.9357 21 1 -0.3634 0.5976 -0.8360 22 1 1.8933 -0.5139 -0.8899 23 1 1.8934 -0.5139 0.8900 24 1 -0.0098 4.5988 0.1171 25 1 4.6809 3.1627 0.7117 26 1 3.4992 3.6143 -0.5993 27 1 5.9946 1.7750 -0.8274 28 1 5.3087 2.8779 -2.0955 29 1 4.7598 -0.5575 -0.7276 30 1 3.8738 -0.7189 -2.2629 31 1 5.5206 -0.0435 -2.2525 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260311046.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:43 Heat of formation + Delta-G solvation = 20.423161 kcal Electronic energy + Delta-G solvation = -11711.666789 eV Core-core repulsion = 9800.740627 eV Total energy + Delta-G solvation = -1910.926162 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.28223 -34.29468 -31.56427 -29.91369 -27.54842 -24.61448 -23.37137 -22.47761 -19.56597 -18.60237 -16.46064 -15.02573 -14.63966 -14.10977 -14.00485 -13.14612 -12.56638 -12.43848 -12.11377 -11.37986 -11.12130 -10.94382 -10.86679 -10.74244 -10.51537 -10.32538 -10.05795 -9.86136 -9.11662 -8.79925 -8.72346 -8.40043 -8.01058 -5.93748 -3.94960 3.32975 3.40705 3.43236 4.47362 4.84786 5.39656 5.44317 5.55534 5.69559 6.00176 6.01836 6.23074 6.26046 6.32916 6.41217 6.42784 6.60940 6.78400 6.96839 6.99122 7.13600 7.23078 7.38313 7.48291 7.66476 7.86784 7.92702 8.19595 8.58417 9.19025 9.66787 11.14845 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.040441 B = 0.015498 C = 0.012493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.194902 B = 1806.298122 C = 2240.674820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.107 4.107 3 C 0.045 3.955 4 H 0.079 0.921 5 C -0.502 4.502 6 H 0.048 0.952 7 C 0.071 3.929 8 N -0.888 5.888 9 Si 0.881 3.119 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.046 3.954 14 H 0.051 0.949 15 C -0.119 4.119 16 C -0.014 4.014 17 N -0.476 5.476 18 C -0.008 4.008 19 H 0.019 0.981 20 H 0.057 0.943 21 H 0.047 0.953 22 H 0.027 0.973 23 H 0.032 0.968 24 H 0.259 0.741 25 H 0.058 0.942 26 H 0.097 0.903 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.033 0.967 30 H 0.063 0.937 31 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.599 -3.663 -0.995 6.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.145 4.145 3 C 0.026 3.974 4 H 0.097 0.903 5 C -0.541 4.541 6 H 0.066 0.934 7 C -0.131 4.131 8 N -0.526 5.526 9 Si 0.709 3.291 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.201 1.201 13 C -0.063 4.063 14 H 0.069 0.931 15 C -0.157 4.157 16 C -0.143 4.143 17 N -0.198 5.198 18 C -0.158 4.158 19 H 0.038 0.962 20 H 0.076 0.924 21 H 0.066 0.934 22 H 0.045 0.955 23 H 0.051 0.949 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.115 0.885 27 H 0.070 0.930 28 H 0.089 0.911 29 H 0.052 0.948 30 H 0.082 0.918 31 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.040 -3.465 -1.662 6.338 hybrid contribution 0.487 0.232 1.563 1.654 sum 5.527 -3.233 -0.099 6.404 Atomic orbital electron populations 1.21510 0.96893 0.97597 1.02426 1.21559 0.95527 0.99871 0.97513 1.18936 0.87513 0.91652 0.99280 0.90282 1.20945 1.34179 1.06905 0.92047 0.93362 1.24904 0.95305 0.97339 0.95545 1.69924 1.36905 1.21082 1.24660 0.86780 0.77589 0.80169 0.84557 1.20731 1.21399 1.20051 1.23861 1.01235 0.94800 0.86391 0.93090 1.22954 0.97304 0.98458 0.96969 1.23823 0.94437 0.96719 0.99325 1.69058 1.20062 1.03484 1.27208 1.22867 0.99017 0.93629 1.00244 0.96153 0.92372 0.93412 0.95473 0.94924 0.93070 0.92315 0.88489 0.93010 0.91070 0.94790 0.91816 0.93233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 9.64 37.16 0.36 -2.42 16 2 C -0.11 -2.40 5.39 -26.73 -0.14 -2.54 16 3 C 0.05 1.12 2.06 -91.77 -0.19 0.93 16 4 H 0.08 2.24 6.92 -51.93 -0.36 1.88 16 5 C -0.50 -13.38 6.95 -34.44 -0.24 -13.62 16 6 H 0.05 1.30 7.82 -52.49 -0.41 0.89 16 7 C 0.07 1.93 5.45 -17.82 -0.10 1.83 16 8 N -0.89 -25.21 12.62 55.43 0.70 -24.51 16 9 Si 0.88 21.07 29.54 -169.99 -5.02 16.04 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.05 1.00 2.43 -71.33 -0.17 0.82 16 14 H 0.05 1.10 7.37 -51.93 -0.38 0.71 16 15 C -0.12 -2.49 7.55 -26.10 -0.20 -2.68 16 16 C -0.01 -0.25 7.57 -7.54 -0.06 -0.30 16 17 N -0.48 -9.55 6.52 -244.54 -1.59 -11.14 16 18 C -0.01 -0.14 9.79 60.07 0.59 0.45 16 19 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 20 H 0.06 1.35 7.58 -51.93 -0.39 0.95 16 21 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 22 H 0.03 0.57 7.86 -51.93 -0.41 0.16 16 23 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 25 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 26 H 0.10 2.29 8.12 -51.93 -0.42 1.86 16 27 H 0.05 0.83 7.91 -51.93 -0.41 0.42 16 28 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.03 0.55 7.15 -51.93 -0.37 0.18 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.05 0.72 7.91 -51.93 -0.41 0.31 16 LS Contribution 252.65 15.07 3.81 3.81 Total: -1.00 -27.60 252.65 -7.50 -35.10 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -5.24 Total: -1.77 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: -0.15 Total: -17.53 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: -0.90 Total: -35.65 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -27.60 -7.50 -35.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260311046.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.526 kcal (2) G-P(sol) polarization free energy of solvation -27.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds