Wall clock time and date at job start Mon Mar 30 2020 02:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47117 * 2 1 4 4 H 1.09003 * 109.47384 * 305.56689 * 3 2 1 5 5 C 1.50700 * 109.47212 * 65.56870 * 3 2 1 6 6 H 1.07999 * 120.00028 * 55.25371 * 5 3 2 7 7 C 1.37872 * 119.99857 * 235.25098 * 5 3 2 8 8 N 1.31514 * 120.00110 * 5.65556 * 7 5 3 9 9 Si 1.86804 * 120.00035 * 185.65648 * 7 5 3 10 10 H 1.48495 * 109.47126 * 90.00011 * 9 7 5 11 11 H 1.48497 * 109.47222 * 210.00311 * 9 7 5 12 12 H 1.48497 * 109.46987 * 330.00366 * 9 7 5 13 13 C 1.53003 * 109.47114 * 185.57017 * 3 2 1 14 14 H 1.09004 * 112.74328 * 308.73035 * 13 3 2 15 15 C 1.53699 * 113.54129 * 177.90867 * 13 3 2 16 16 C 1.53513 * 83.51484 * 219.20197 * 15 13 3 17 17 N 1.47480 * 113.47690 * 79.50201 * 13 3 2 18 18 C 1.46901 * 111.00146 * 253.53127 * 17 13 3 19 19 H 1.09005 * 109.47075 * 174.44044 * 1 2 3 20 20 H 1.09002 * 109.46799 * 294.43327 * 1 2 3 21 21 H 1.08996 * 109.47301 * 54.43847 * 1 2 3 22 22 H 1.08997 * 109.46986 * 239.99634 * 2 1 3 23 23 H 1.09005 * 109.47092 * 120.00235 * 2 1 3 24 24 H 0.97000 * 119.99992 * 179.97438 * 8 7 5 25 25 H 1.09001 * 114.22629 * 105.57612 * 15 13 3 26 26 H 1.09002 * 114.16664 * 332.82091 * 15 13 3 27 27 H 1.08999 * 113.47365 * 271.22357 * 16 15 13 28 28 H 1.08996 * 113.47605 * 140.81153 * 16 15 13 29 29 H 1.09006 * 109.46777 * 345.55660 * 18 17 13 30 30 H 1.08995 * 109.47166 * 105.55792 * 18 17 13 31 31 H 1.09002 * 109.47230 * 225.55903 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5976 1.9843 -0.8359 5 6 1.6534 2.1119 1.2936 6 1 1.9377 1.6693 2.2368 7 6 0.9368 3.2896 1.2730 8 7 0.4947 3.7705 0.1315 9 14 0.5937 4.2023 2.8664 10 1 1.6925 5.1653 3.1316 11 1 -0.6912 4.9373 2.7491 12 1 0.5072 3.2296 3.9851 13 6 3.5636 1.4447 -0.1400 14 1 4.0541 0.7913 0.5816 15 6 4.1723 2.8547 -0.2018 16 6 5.0954 2.2211 -1.2522 17 7 4.0266 1.2423 -1.5255 18 6 4.5809 -0.1064 -1.7037 19 1 -0.3633 -1.0229 -0.0996 20 1 -0.3633 0.4251 0.9357 21 1 -0.3634 0.5976 -0.8360 22 1 1.8933 -0.5139 -0.8899 23 1 1.8934 -0.5139 0.8900 24 1 -0.0098 4.5988 0.1171 25 1 4.6809 3.1627 0.7117 26 1 3.4992 3.6143 -0.5993 27 1 5.9946 1.7750 -0.8274 28 1 5.3087 2.8779 -2.0955 29 1 4.7598 -0.5575 -0.7276 30 1 3.8738 -0.7189 -2.2629 31 1 5.5206 -0.0435 -2.2525 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260311046.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:43 Heat of formation + Delta-G solvation = 2.340798 kcal Electronic energy + Delta-G solvation = -11712.450899 eV Core-core repulsion = 9800.740627 eV Total energy + Delta-G solvation = -1911.710272 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.87236 -36.18820 -33.56751 -31.41828 -29.34914 -26.54787 -24.85709 -24.18604 -21.40814 -20.27135 -18.49518 -16.58459 -16.52443 -15.77656 -15.63014 -14.92263 -14.26667 -13.99363 -13.85502 -13.18473 -12.87033 -12.77979 -12.70139 -12.31345 -12.21155 -12.11048 -11.77851 -11.62995 -10.94462 -10.74750 -10.63642 -10.36420 -9.55089 -8.01605 -6.07751 1.42462 1.44859 1.52864 2.48267 3.18830 3.47140 3.94301 4.07149 4.27422 4.46376 4.55657 4.64426 4.67271 4.73131 4.82777 4.88161 5.00332 5.16868 5.19156 5.31128 5.37676 5.51421 5.60628 5.64814 5.77172 5.89748 6.05303 6.38250 6.62410 7.11897 7.56268 9.06878 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.040441 B = 0.015498 C = 0.012493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.194902 B = 1806.298122 C = 2240.674820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.103 4.103 3 C 0.044 3.956 4 H 0.037 0.963 5 C -0.506 4.506 6 H 0.044 0.956 7 C 0.026 3.974 8 N -0.920 5.920 9 Si 0.937 3.063 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.270 1.270 13 C 0.045 3.955 14 H 0.060 0.940 15 C -0.126 4.126 16 C 0.004 3.996 17 N -0.500 5.500 18 C -0.008 4.008 19 H 0.054 0.946 20 H 0.038 0.962 21 H 0.027 0.973 22 H 0.039 0.961 23 H 0.040 0.960 24 H 0.257 0.743 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.039 0.961 30 H 0.063 0.937 31 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.874 -4.626 -0.598 8.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.141 4.141 3 C 0.025 3.975 4 H 0.055 0.945 5 C -0.544 4.544 6 H 0.062 0.938 7 C -0.173 4.173 8 N -0.560 5.560 9 Si 0.764 3.236 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.194 1.194 13 C -0.064 4.064 14 H 0.077 0.923 15 C -0.164 4.164 16 C -0.125 4.125 17 N -0.223 5.223 18 C -0.157 4.157 19 H 0.073 0.927 20 H 0.057 0.943 21 H 0.046 0.954 22 H 0.058 0.942 23 H 0.059 0.941 24 H 0.067 0.933 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.327 -4.439 -1.261 7.831 hybrid contribution 0.100 0.483 1.403 1.488 sum 6.427 -3.956 0.142 7.548 Atomic orbital electron populations 1.21432 0.96730 0.99141 1.00478 1.21491 0.95686 0.98533 0.98373 1.18820 0.89653 0.92274 0.96746 0.94462 1.21165 1.33656 1.07018 0.92604 0.93796 1.25528 0.95442 0.98223 0.98086 1.70062 1.37969 1.21424 1.26504 0.85887 0.77322 0.79095 0.81341 1.20187 1.21521 1.19447 1.23693 0.99128 0.95587 0.87976 0.92263 1.22843 0.97845 0.97262 0.98433 1.23782 0.94301 0.95777 0.98617 1.68954 1.21772 1.05821 1.25705 1.22903 1.00089 0.91727 1.00961 0.92746 0.94293 0.95380 0.94226 0.94145 0.93347 0.91511 0.92133 0.90075 0.89936 0.94218 0.91809 0.90646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.21 9.64 71.98 0.69 -4.52 16 2 C -0.10 -4.52 5.39 30.59 0.16 -4.36 16 3 C 0.04 2.20 2.06 -11.54 -0.02 2.18 16 4 H 0.04 2.16 6.92 -2.39 -0.02 2.15 16 5 C -0.51 -27.09 6.95 25.60 0.18 -26.92 16 6 H 0.04 2.35 7.82 -2.91 -0.02 2.33 16 7 C 0.03 1.42 5.45 84.65 0.46 1.88 16 8 N -0.92 -53.66 12.62 21.45 0.27 -53.38 16 9 Si 0.94 43.47 29.54 68.60 2.03 45.50 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 12 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 13 C 0.05 1.92 2.43 42.25 0.10 2.02 16 14 H 0.06 2.43 7.37 -2.38 -0.02 2.41 16 15 C -0.13 -5.19 7.55 31.00 0.23 -4.96 16 16 C 0.00 0.13 7.57 83.58 0.63 0.76 16 17 N -0.50 -19.17 6.52 -927.58 -6.05 -25.21 16 18 C -0.01 -0.24 9.79 127.69 1.25 1.01 16 19 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 20 H 0.04 1.79 7.58 -2.39 -0.02 1.78 16 21 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 22 H 0.04 1.62 7.86 -2.39 -0.02 1.60 16 23 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 24 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 25 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 26 H 0.06 2.93 8.12 -2.39 -0.02 2.91 16 27 H 0.08 2.26 7.91 -2.39 -0.02 2.24 16 28 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 29 H 0.04 1.16 7.15 -2.38 -0.02 1.15 16 30 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.07 1.90 7.91 -2.39 -0.02 1.88 16 Total: -1.00 -58.99 252.65 1.01 -57.98 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: 1.07 Total: 8.01 kcal Atomic # 6 Polarization: -36.58 SS G_CDS: 3.69 Total: -32.89 kcal Atomic # 7 Polarization: -72.82 SS G_CDS: -5.78 Total: -78.60 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -58.99 1.01 -57.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260311046.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.321 kcal (2) G-P(sol) polarization free energy of solvation -58.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds