Wall clock time and date at job start Mon Mar 30 2020 01:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46847 * 110.99982 * 2 1 4 4 C 1.53034 * 109.51345 * 185.84805 * 3 2 1 5 5 C 1.53123 * 109.27992 * 300.80438 * 4 3 2 6 6 C 1.53002 * 109.53088 * 297.76946 * 5 4 3 7 7 C 1.50695 * 109.52378 * 177.57008 * 5 4 3 8 8 H 1.07996 * 120.00302 * 240.32715 * 7 5 4 9 9 C 1.37876 * 119.99975 * 60.32942 * 7 5 4 10 10 N 1.31515 * 120.00042 * 0.02562 * 9 7 5 11 11 Si 1.86803 * 119.99967 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47143 * 60.00512 * 11 9 7 13 13 H 1.48505 * 109.46818 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47234 * 299.99969 * 11 9 7 15 15 C 1.53127 * 109.15019 * 57.67185 * 5 4 3 16 16 C 1.46843 * 110.99970 * 124.21365 * 2 1 3 17 17 H 1.09000 * 109.47319 * 59.99571 * 1 2 3 18 18 H 1.09002 * 109.47520 * 179.97438 * 1 2 3 19 19 H 1.09003 * 109.47227 * 299.99524 * 1 2 3 20 20 H 1.09002 * 109.46481 * 305.85957 * 3 2 1 21 21 H 1.08994 * 109.46283 * 65.83811 * 3 2 1 22 22 H 1.08997 * 109.50952 * 60.75924 * 4 3 2 23 23 H 1.08998 * 109.50459 * 180.87821 * 4 3 2 24 24 H 1.09007 * 109.46974 * 179.67738 * 6 5 4 25 25 H 1.08998 * 109.47153 * 299.67175 * 6 5 4 26 26 H 1.08998 * 109.47206 * 59.67919 * 6 5 4 27 27 H 0.96999 * 120.00220 * 179.97438 * 10 9 7 28 28 H 1.08997 * 109.49981 * 182.39822 * 15 5 4 29 29 H 1.08998 * 109.53089 * 62.30397 * 15 5 4 30 30 H 1.08993 * 109.46313 * 294.17341 * 16 2 1 31 31 H 1.09000 * 109.46480 * 54.15451 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5180 1.3339 -0.1470 5 6 4.1188 0.5369 1.0143 6 6 3.7958 1.2365 2.3361 7 6 5.6132 0.4462 0.8429 8 1 6.0884 -0.5189 0.7481 9 6 6.3740 1.5955 0.8074 10 7 5.7956 2.7709 0.9235 11 14 8.2266 1.4831 0.5957 12 1 8.5379 0.8070 -0.6893 13 1 8.8080 2.8496 0.5901 14 1 8.8068 0.7035 1.7186 15 6 3.5181 -0.8716 1.0207 16 6 1.9952 -0.7708 1.1337 17 1 -0.3634 0.5139 -0.8899 18 1 -0.3634 -1.0277 -0.0005 19 1 -0.3634 0.5138 0.8900 20 1 1.5633 1.9258 -0.8329 21 1 1.7326 1.8607 0.9376 22 1 3.7811 0.8565 -1.0908 23 1 3.9100 2.3509 -0.1313 24 1 4.2190 0.6653 3.1624 25 1 4.2238 2.2390 2.3306 26 1 2.7146 1.3036 2.4569 27 1 6.3308 3.5795 0.8988 28 1 3.9099 -1.4304 1.8705 29 1 3.7813 -1.3842 0.0955 30 1 1.7324 -0.2710 2.0659 31 1 1.5635 -1.7717 1.1240 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260331948.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:27 Heat of formation + Delta-G solvation = -23.522324 kcal Electronic energy + Delta-G solvation = -11929.921221 eV Core-core repulsion = 10017.089440 eV Total energy + Delta-G solvation = -1912.831781 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.14612 -36.16061 -33.37354 -31.45270 -28.98196 -27.42257 -25.67531 -23.73149 -22.70113 -19.35012 -18.15143 -16.80268 -16.08515 -15.82354 -15.43636 -14.85098 -14.69946 -14.11688 -13.54230 -13.08623 -12.86892 -12.83776 -12.55416 -12.46063 -12.24601 -12.06804 -11.89798 -11.68374 -11.13319 -10.67316 -10.47974 -10.26907 -9.07456 -7.95957 -6.12254 1.43654 1.44118 1.51191 2.47447 3.19407 3.25273 4.23423 4.27435 4.39742 4.48488 4.66680 4.71844 4.83146 4.89921 4.94875 5.01047 5.03108 5.10183 5.24049 5.36530 5.38325 5.62506 5.71625 5.73100 6.13963 6.24564 6.38470 6.41042 6.52350 6.95577 7.54584 9.01837 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.073569 B = 0.012627 C = 0.012078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.505073 B = 2217.020286 C = 2317.795306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.555 5.555 3 C 0.064 3.936 4 C -0.091 4.091 5 C 0.058 3.942 6 C -0.120 4.120 7 C -0.525 4.525 8 H 0.044 0.956 9 C 0.021 3.979 10 N -0.905 5.905 11 Si 0.944 3.056 12 H -0.276 1.276 13 H -0.285 1.285 14 H -0.276 1.276 15 C -0.098 4.098 16 C 0.063 3.937 17 H 0.073 0.927 18 H 0.079 0.921 19 H 0.022 0.978 20 H 0.068 0.932 21 H 0.022 0.978 22 H 0.023 0.977 23 H 0.065 0.935 24 H 0.018 0.982 25 H 0.055 0.945 26 H 0.026 0.974 27 H 0.258 0.742 28 H 0.050 0.950 29 H 0.044 0.956 30 H 0.027 0.973 31 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.559 -3.486 -0.184 8.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.280 5.280 3 C -0.064 4.064 4 C -0.130 4.130 5 C 0.057 3.943 6 C -0.177 4.177 7 C -0.563 4.563 8 H 0.062 0.938 9 C -0.177 4.177 10 N -0.545 5.545 11 Si 0.771 3.229 12 H -0.202 1.202 13 H -0.210 1.210 14 H -0.201 1.201 15 C -0.135 4.135 16 C -0.064 4.064 17 H 0.092 0.908 18 H 0.098 0.902 19 H 0.041 0.959 20 H 0.086 0.914 21 H 0.041 0.959 22 H 0.042 0.958 23 H 0.083 0.917 24 H 0.037 0.963 25 H 0.074 0.926 26 H 0.044 0.956 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.045 0.955 31 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.357 -3.518 -0.607 8.177 hybrid contribution 0.980 0.569 0.644 1.303 sum -6.377 -2.949 0.037 7.026 Atomic orbital electron populations 1.22408 0.86423 1.02631 1.00723 1.61940 1.08339 1.13964 1.43776 1.22100 0.96487 0.88714 0.99063 1.21443 0.92084 1.01697 0.97761 1.18183 0.93067 0.91135 0.91899 1.21738 0.96640 1.01906 0.97462 1.21462 0.93325 0.92134 1.49403 0.93789 1.25558 1.01774 0.95325 0.95067 1.69932 1.35938 0.97505 1.51109 0.85841 0.81697 0.76900 0.78503 1.20177 1.21035 1.20129 1.21568 0.93931 0.98252 0.99798 1.22085 0.95561 0.97753 0.91048 0.90829 0.90198 0.95927 0.91379 0.95937 0.95812 0.91697 0.96314 0.92611 0.95564 0.93290 0.93090 0.93752 0.95469 0.89949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 9.59 127.69 1.22 1.92 16 2 N -0.56 -19.73 4.91 -922.62 -4.53 -24.26 16 3 C 0.06 2.53 5.22 86.32 0.45 2.98 16 4 C -0.09 -4.41 4.63 30.65 0.14 -4.27 16 5 C 0.06 2.83 0.49 -52.84 -0.03 2.81 16 6 C -0.12 -5.81 7.68 71.98 0.55 -5.25 16 7 C -0.53 -28.95 8.02 25.60 0.21 -28.74 16 8 H 0.04 2.43 7.74 -2.91 -0.02 2.41 16 9 C 0.02 1.18 5.15 84.65 0.44 1.61 16 10 N -0.91 -50.84 9.40 21.45 0.20 -50.64 16 11 Si 0.94 43.85 29.54 68.60 2.03 45.88 16 12 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 13 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 14 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 15 C -0.10 -4.16 4.82 30.65 0.15 -4.01 16 16 C 0.06 2.25 5.22 86.33 0.45 2.70 16 17 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 18 H 0.08 1.82 8.09 -2.39 -0.02 1.80 16 19 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 20 H 0.07 2.46 8.12 -2.39 -0.02 2.44 16 21 H 0.02 0.91 6.51 -2.39 -0.02 0.89 16 22 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.06 3.48 6.17 -2.39 -0.01 3.46 16 24 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 25 H 0.06 2.99 6.06 -2.39 -0.01 2.97 16 26 H 0.03 1.13 4.92 -2.39 -0.01 1.12 16 27 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 28 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.03 0.98 6.51 -2.39 -0.02 0.96 16 31 H 0.08 2.49 8.09 -2.39 -0.02 2.47 16 Total: -1.00 -57.70 235.37 2.36 -55.34 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: 1.08 Total: 3.93 kcal Atomic # 6 Polarization: -33.83 SS G_CDS: 3.58 Total: -30.25 kcal Atomic # 7 Polarization: -70.57 SS G_CDS: -4.33 Total: -74.90 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -57.70 2.36 -55.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260331948.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.819 kcal (2) G-P(sol) polarization free energy of solvation -57.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds