Wall clock time and date at job start Mon Mar 30 2020 01:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 110.05798 * 2 1 4 4 C 1.54271 * 110.03167 * 238.58190 * 2 1 3 5 5 H 1.08998 * 110.48649 * 335.78492 * 4 2 1 6 6 N 1.46895 * 110.48210 * 98.42900 * 4 2 1 7 7 C 1.54888 * 104.19406 * 217.10622 * 4 2 1 8 8 C 1.54885 * 102.74932 * 37.94339 * 7 4 2 9 9 C 1.53873 * 110.03103 * 121.41707 * 2 1 3 10 10 H 1.09002 * 110.03070 * 238.56846 * 9 2 1 11 11 C 1.50704 * 110.03149 * 359.95129 * 9 2 1 12 12 H 1.07997 * 120.00083 * 359.30861 * 11 9 2 13 13 C 1.37879 * 119.99616 * 179.31104 * 11 9 2 14 14 N 1.31512 * 120.00501 * 359.97438 * 13 11 9 15 15 Si 1.86808 * 119.99705 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.46938 * 60.00019 * 15 13 11 17 17 H 1.48497 * 109.46938 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46918 * 299.99880 * 15 13 11 19 19 H 1.09000 * 109.47261 * 298.58482 * 1 2 3 20 20 H 1.09000 * 109.47021 * 58.58295 * 1 2 3 21 21 H 1.09003 * 109.47220 * 178.57973 * 1 2 3 22 22 H 1.08994 * 109.47309 * 181.41490 * 3 2 1 23 23 H 1.09001 * 109.46733 * 301.41964 * 3 2 1 24 24 H 1.08996 * 109.46830 * 61.41252 * 3 2 1 25 25 H 1.00908 * 111.00034 * 180.02562 * 6 4 2 26 26 H 1.00906 * 111.00512 * 303.94764 * 6 4 2 27 27 H 1.09003 * 110.75449 * 156.26021 * 7 4 2 28 28 H 1.08999 * 110.75759 * 279.44407 * 7 4 2 29 29 H 1.08997 * 110.48751 * 203.37664 * 8 7 4 30 30 H 1.09009 * 110.48932 * 80.73395 * 8 7 4 31 31 H 0.96996 * 120.00350 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0548 1.4372 0.0000 4 6 2.0585 -0.7555 -1.2369 5 1 1.3143 -1.4660 -1.5966 6 7 2.4240 0.1904 -2.2996 7 6 3.3137 -1.5008 -0.7191 8 6 2.8874 -1.9407 0.7035 9 6 2.0571 -0.7536 1.2337 10 1 2.6867 -0.0954 1.8324 11 6 0.9037 -1.2581 2.0621 12 1 -0.1115 -1.0560 1.7541 13 6 1.1446 -1.9778 3.2132 14 7 2.3808 -2.2244 3.5880 15 14 -0.2851 -2.6027 4.2405 16 1 -1.1253 -3.5106 3.4189 17 1 0.2372 -3.3412 5.4182 18 1 -1.1035 -1.4524 4.7012 19 1 -0.3634 0.4917 0.9024 20 1 -0.3633 0.5357 -0.8770 21 1 -0.3634 -1.0274 -0.0255 22 1 3.1443 1.4262 -0.0254 23 1 1.6761 1.9622 -0.8770 24 1 1.7175 1.9471 0.9024 25 1 2.7705 -0.2958 -3.1131 26 1 1.6444 0.7846 -2.5389 27 1 3.5325 -2.3679 -1.3423 28 1 4.1718 -0.8299 -0.6782 29 1 3.7637 -2.1038 1.3310 30 1 2.2770 -2.8426 0.6572 31 1 2.5503 -2.7304 4.3980 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260350007.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:48 Heat of formation + Delta-G solvation = -15.353223 kcal Electronic energy + Delta-G solvation = -11905.741361 eV Core-core repulsion = 9993.263819 eV Total energy + Delta-G solvation = -1912.477542 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.49741 -33.18915 -31.51125 -30.95358 -27.02017 -26.26811 -23.33990 -22.82981 -19.52658 -17.49759 -15.89224 -15.21104 -14.62472 -14.51554 -13.83471 -12.78951 -12.72066 -12.35209 -11.94573 -11.58449 -11.20093 -10.92298 -10.70908 -10.45968 -10.26687 -9.99429 -9.76547 -9.54262 -9.32673 -8.85300 -8.47403 -8.29526 -8.12713 -5.91552 -3.92647 3.35358 3.40461 3.42447 4.50539 5.09653 5.39527 5.57384 5.69377 5.90141 6.23335 6.30767 6.41128 6.53720 6.54700 6.61524 6.74516 6.75594 6.93671 7.13212 7.22879 7.29212 7.37172 7.49672 7.71906 7.83284 7.90643 8.00252 8.15001 8.57686 9.09801 9.70960 11.18352 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.056088 B = 0.014138 C = 0.012770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.096504 B = 1980.028301 C = 2192.194330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.060 4.060 3 C -0.112 4.112 4 C 0.092 3.908 5 H 0.031 0.969 6 N -0.841 5.841 7 C -0.122 4.122 8 C -0.092 4.092 9 C 0.057 3.943 10 H 0.028 0.972 11 C -0.519 4.519 12 H 0.070 0.930 13 C 0.060 3.940 14 N -0.891 5.891 15 Si 0.884 3.116 16 H -0.279 1.279 17 H -0.289 1.289 18 H -0.278 1.278 19 H 0.059 0.941 20 H 0.017 0.983 21 H 0.055 0.945 22 H 0.049 0.951 23 H 0.038 0.962 24 H 0.040 0.960 25 H 0.327 0.673 26 H 0.332 0.668 27 H 0.040 0.960 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.179 2.641 -7.810 8.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.060 4.060 3 C -0.170 4.170 4 C -0.019 4.019 5 H 0.049 0.951 6 N -0.370 5.370 7 C -0.160 4.160 8 C -0.130 4.130 9 C 0.039 3.961 10 H 0.046 0.954 11 C -0.557 4.557 12 H 0.088 0.912 13 C -0.141 4.141 14 N -0.530 5.530 15 Si 0.712 3.288 16 H -0.205 1.205 17 H -0.215 1.215 18 H -0.204 1.204 19 H 0.078 0.922 20 H 0.036 0.964 21 H 0.074 0.926 22 H 0.068 0.932 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.138 0.862 26 H 0.145 0.855 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.546 2.828 -7.128 7.688 hybrid contribution -1.486 -0.989 0.089 1.787 sum -2.032 1.839 -7.039 7.554 Atomic orbital electron populations 1.21880 0.95994 1.00864 0.98951 1.21254 0.94418 0.94944 0.95410 1.21571 1.00563 0.95777 0.99041 1.22314 0.96016 0.92159 0.91368 0.95129 1.58981 1.39870 1.25469 1.12647 1.22634 0.96868 0.97753 0.98724 1.22232 0.99622 0.99711 0.91476 1.19268 0.94567 0.92064 0.90235 0.95357 1.21634 0.93425 1.33534 1.07144 0.91241 1.25014 0.95138 0.96388 0.97534 1.69978 1.18502 1.40358 1.24190 0.86792 0.83052 0.78981 0.79936 1.20457 1.21493 1.20418 0.92223 0.96381 0.92578 0.93151 0.94314 0.94108 0.86213 0.85547 0.94139 0.91992 0.92561 0.93195 0.93261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.37 6.86 37.16 0.25 -2.12 16 2 C -0.06 -1.23 0.88 -153.39 -0.13 -1.37 16 3 C -0.11 -2.13 7.45 37.16 0.28 -1.86 16 4 C 0.09 1.71 3.39 -66.05 -0.22 1.49 16 5 H 0.03 0.58 7.84 -51.93 -0.41 0.18 16 6 N -0.84 -12.89 8.07 -3.26 -0.03 -12.92 16 7 C -0.12 -2.41 6.58 -24.74 -0.16 -2.57 16 8 C -0.09 -2.20 5.40 -25.07 -0.14 -2.33 16 9 C 0.06 1.43 2.48 -90.65 -0.22 1.21 16 10 H 0.03 0.78 7.67 -51.93 -0.40 0.39 16 11 C -0.52 -14.03 7.50 -34.44 -0.26 -14.29 16 12 H 0.07 1.82 4.66 -52.49 -0.24 1.57 16 13 C 0.06 1.68 5.33 -17.82 -0.09 1.59 16 14 N -0.89 -25.93 12.38 55.43 0.69 -25.24 16 15 Si 0.88 21.44 29.54 -169.99 -5.02 16.42 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H 0.06 1.23 7.09 -51.93 -0.37 0.87 16 20 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 21 H 0.06 1.16 7.10 -51.93 -0.37 0.79 16 22 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 23 H 0.04 0.65 6.95 -51.93 -0.36 0.29 16 24 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.33 4.33 9.08 -39.29 -0.36 3.97 16 26 H 0.33 4.66 8.10 -39.29 -0.32 4.34 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 29 H 0.06 1.44 7.95 -51.93 -0.41 1.02 16 30 H 0.05 1.26 7.85 -51.92 -0.41 0.85 16 31 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 240.48 15.07 3.62 3.62 Total: -1.00 -28.17 240.48 -6.33 -34.50 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -4.89 Total: 3.87 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: -0.70 Total: -20.25 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.66 Total: -38.16 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -28.17 -6.33 -34.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260350007.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.147 kcal (2) G-P(sol) polarization free energy of solvation -28.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds