Wall clock time and date at job start Mon Mar 30 2020 01:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 110.05798 * 2 1 4 4 C 1.54271 * 110.03167 * 238.58190 * 2 1 3 5 5 H 1.08998 * 110.48649 * 335.78492 * 4 2 1 6 6 N 1.46895 * 110.48210 * 98.42900 * 4 2 1 7 7 C 1.54888 * 104.19406 * 217.10622 * 4 2 1 8 8 C 1.54885 * 102.74932 * 37.94339 * 7 4 2 9 9 C 1.53873 * 110.03103 * 121.41707 * 2 1 3 10 10 H 1.09002 * 110.03070 * 238.56846 * 9 2 1 11 11 C 1.50704 * 110.03149 * 359.95129 * 9 2 1 12 12 H 1.07997 * 120.00083 * 359.30861 * 11 9 2 13 13 C 1.37879 * 119.99616 * 179.31104 * 11 9 2 14 14 N 1.31512 * 120.00501 * 359.97438 * 13 11 9 15 15 Si 1.86808 * 119.99705 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.46938 * 60.00019 * 15 13 11 17 17 H 1.48497 * 109.46938 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46918 * 299.99880 * 15 13 11 19 19 H 1.09000 * 109.47261 * 298.58482 * 1 2 3 20 20 H 1.09000 * 109.47021 * 58.58295 * 1 2 3 21 21 H 1.09003 * 109.47220 * 178.57973 * 1 2 3 22 22 H 1.08994 * 109.47309 * 181.41490 * 3 2 1 23 23 H 1.09001 * 109.46733 * 301.41964 * 3 2 1 24 24 H 1.08996 * 109.46830 * 61.41252 * 3 2 1 25 25 H 1.00908 * 111.00034 * 180.02562 * 6 4 2 26 26 H 1.00906 * 111.00512 * 303.94764 * 6 4 2 27 27 H 1.09003 * 110.75449 * 156.26021 * 7 4 2 28 28 H 1.08999 * 110.75759 * 279.44407 * 7 4 2 29 29 H 1.08997 * 110.48751 * 203.37664 * 8 7 4 30 30 H 1.09009 * 110.48932 * 80.73395 * 8 7 4 31 31 H 0.96996 * 120.00350 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0548 1.4372 0.0000 4 6 2.0585 -0.7555 -1.2369 5 1 1.3143 -1.4660 -1.5966 6 7 2.4240 0.1904 -2.2996 7 6 3.3137 -1.5008 -0.7191 8 6 2.8874 -1.9407 0.7035 9 6 2.0571 -0.7536 1.2337 10 1 2.6867 -0.0954 1.8324 11 6 0.9037 -1.2581 2.0621 12 1 -0.1115 -1.0560 1.7541 13 6 1.1446 -1.9778 3.2132 14 7 2.3808 -2.2244 3.5880 15 14 -0.2851 -2.6027 4.2405 16 1 -1.1253 -3.5106 3.4189 17 1 0.2372 -3.3412 5.4182 18 1 -1.1035 -1.4524 4.7012 19 1 -0.3634 0.4917 0.9024 20 1 -0.3633 0.5357 -0.8770 21 1 -0.3634 -1.0274 -0.0255 22 1 3.1443 1.4262 -0.0254 23 1 1.6761 1.9622 -0.8770 24 1 1.7175 1.9471 0.9024 25 1 2.7705 -0.2958 -3.1131 26 1 1.6444 0.7846 -2.5389 27 1 3.5325 -2.3679 -1.3423 28 1 4.1718 -0.8299 -0.6782 29 1 3.7637 -2.1038 1.3310 30 1 2.2770 -2.8426 0.6572 31 1 2.5503 -2.7304 4.3980 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260350007.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:48 Heat of formation + Delta-G solvation = -33.666284 kcal Electronic energy + Delta-G solvation = -11906.535475 eV Core-core repulsion = 9993.263819 eV Total energy + Delta-G solvation = -1913.271656 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.17483 -35.04629 -33.17439 -32.70377 -28.81659 -27.92321 -25.20526 -24.54231 -21.32839 -19.20632 -17.88712 -16.75927 -16.47829 -15.98973 -15.53826 -14.61602 -14.43078 -14.06415 -13.57310 -13.45458 -12.89344 -12.74183 -12.48468 -12.25354 -11.97685 -11.70056 -11.62810 -11.34517 -11.00174 -10.67109 -10.48004 -10.39935 -9.42379 -8.04690 -6.11639 1.41768 1.42632 1.49578 2.46866 3.26271 3.78960 3.96305 4.04439 4.34576 4.65307 4.70040 4.81617 4.89186 4.96375 5.03743 5.04877 5.16569 5.32128 5.34850 5.49919 5.58101 5.69759 5.72468 5.79310 5.98817 6.07043 6.41296 6.53056 6.81359 7.00900 7.55509 9.04728 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.056088 B = 0.014138 C = 0.012770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.096504 B = 1980.028301 C = 2192.194330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.062 4.062 3 C -0.104 4.104 4 C 0.104 3.896 5 H 0.033 0.967 6 N -0.836 5.836 7 C -0.112 4.112 8 C -0.087 4.087 9 C 0.049 3.951 10 H -0.012 1.012 11 C -0.529 4.529 12 H 0.078 0.922 13 C 0.006 3.994 14 N -0.926 5.926 15 Si 0.946 3.054 16 H -0.270 1.270 17 H -0.291 1.291 18 H -0.271 1.271 19 H 0.043 0.957 20 H 0.053 0.947 21 H 0.042 0.958 22 H 0.040 0.960 23 H 0.068 0.932 24 H 0.028 0.972 25 H 0.344 0.656 26 H 0.345 0.655 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.026 0.974 30 H 0.029 0.971 31 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.284 3.149 -9.594 10.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.062 4.062 3 C -0.162 4.162 4 C -0.007 4.007 5 H 0.051 0.949 6 N -0.367 5.367 7 C -0.150 4.150 8 C -0.126 4.126 9 C 0.030 3.970 10 H 0.006 0.994 11 C -0.567 4.567 12 H 0.096 0.904 13 C -0.192 4.192 14 N -0.566 5.566 15 Si 0.772 3.228 16 H -0.196 1.196 17 H -0.216 1.216 18 H -0.197 1.197 19 H 0.062 0.938 20 H 0.072 0.928 21 H 0.061 0.939 22 H 0.059 0.941 23 H 0.087 0.913 24 H 0.047 0.953 25 H 0.157 0.843 26 H 0.159 0.841 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.045 0.955 30 H 0.048 0.952 31 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.664 3.348 -8.938 9.689 hybrid contribution -1.110 -1.122 0.639 1.702 sum -2.773 2.227 -8.299 9.029 Atomic orbital electron populations 1.21770 0.95087 1.00399 0.99882 1.21200 0.95165 0.95526 0.94338 1.21486 0.99947 0.94877 0.99856 1.22026 0.94928 0.92262 0.91473 0.94889 1.58809 1.40354 1.24837 1.12720 1.22516 0.97575 0.98773 0.96111 1.22029 0.97937 0.98604 0.93994 1.19277 0.93718 0.92195 0.91779 0.99354 1.22096 0.94470 1.32740 1.07347 0.90447 1.25808 0.97419 0.96966 0.98998 1.70131 1.20484 1.41413 1.24610 0.85800 0.80128 0.78578 0.78289 1.19557 1.21648 1.19674 0.93759 0.92796 0.93859 0.94064 0.91292 0.95307 0.84276 0.84080 0.91953 0.91953 0.95550 0.95221 0.93594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.28 6.86 71.98 0.49 -3.78 16 2 C -0.06 -2.46 0.88 -51.46 -0.05 -2.51 16 3 C -0.10 -3.78 7.45 71.98 0.54 -3.25 16 4 C 0.10 3.61 3.39 45.99 0.16 3.76 16 5 H 0.03 1.15 7.84 -2.39 -0.02 1.13 16 6 N -0.84 -22.28 8.07 -164.24 -1.33 -23.61 16 7 C -0.11 -4.27 6.58 31.88 0.21 -4.06 16 8 C -0.09 -4.25 5.40 31.67 0.17 -4.08 16 9 C 0.05 2.49 2.48 -10.81 -0.03 2.47 16 10 H -0.01 -0.68 7.67 -2.39 -0.02 -0.70 16 11 C -0.53 -28.93 7.50 25.60 0.19 -28.74 16 12 H 0.08 4.03 4.66 -2.91 -0.01 4.02 16 13 C 0.01 0.32 5.33 84.66 0.45 0.77 16 14 N -0.93 -55.61 12.38 21.45 0.27 -55.34 16 15 Si 0.95 44.39 29.54 68.60 2.03 46.42 16 16 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 17 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 18 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 19 H 0.04 1.77 7.09 -2.39 -0.02 1.75 16 20 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 21 H 0.04 1.71 7.10 -2.39 -0.02 1.69 16 22 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.07 2.07 6.95 -2.39 -0.02 2.05 16 24 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.34 7.60 9.08 -89.69 -0.81 6.78 16 26 H 0.35 8.01 8.10 -89.69 -0.73 7.28 16 27 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.03 1.39 7.95 -2.39 -0.02 1.37 16 30 H 0.03 1.52 7.85 -2.38 -0.02 1.50 16 31 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -61.20 240.48 2.68 -58.52 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -0.43 Total: 13.42 kcal Atomic # 6 Polarization: -41.55 SS G_CDS: 2.14 Total: -39.41 kcal Atomic # 7 Polarization: -77.89 SS G_CDS: -1.06 Total: -78.95 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -61.20 2.68 -58.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260350007.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.858 kcal (2) G-P(sol) polarization free energy of solvation -61.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds