Wall clock time and date at job start Mon Mar 30 2020 02:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47037 * 2 1 4 4 C 1.53002 * 109.46969 * 120.00360 * 2 1 3 5 5 H 1.08998 * 110.27371 * 189.37772 * 4 2 1 6 6 C 1.54600 * 110.30840 * 311.56780 * 4 2 1 7 7 C 1.54935 * 102.92046 * 140.87632 * 6 4 2 8 8 N 1.48534 * 103.22718 * 322.58685 * 7 6 4 9 9 C 1.47900 * 105.81982 * 39.20724 * 8 7 6 10 10 H 1.08997 * 110.08062 * 94.11804 * 9 8 7 11 11 C 1.50706 * 109.91777 * 215.31640 * 9 8 7 12 12 H 1.07992 * 120.00102 * 123.18835 * 11 9 8 13 13 C 1.37876 * 119.99650 * 303.46506 * 11 9 8 14 14 N 1.31516 * 120.00226 * 359.72189 * 13 11 9 15 15 Si 1.86803 * 119.99801 * 179.72550 * 13 11 9 16 16 H 1.48495 * 109.47309 * 59.99635 * 15 13 11 17 17 H 1.48498 * 109.47341 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47022 * 299.99700 * 15 13 11 19 19 H 1.08996 * 109.47210 * 311.94563 * 1 2 3 20 20 H 1.08999 * 109.47382 * 71.94548 * 1 2 3 21 21 H 1.09005 * 109.47359 * 191.94633 * 1 2 3 22 22 H 1.08998 * 109.47171 * 239.99799 * 2 1 3 23 23 H 1.09003 * 109.47193 * 55.32237 * 3 2 1 24 24 H 1.09005 * 109.47042 * 175.32195 * 3 2 1 25 25 H 1.09001 * 109.47480 * 295.31769 * 3 2 1 26 26 H 1.08999 * 110.72482 * 259.23642 * 6 4 2 27 27 H 1.09005 * 110.72432 * 22.34041 * 6 4 2 28 28 H 1.08991 * 110.66962 * 81.02215 * 7 6 4 29 29 H 1.09005 * 110.66856 * 204.15594 * 7 6 4 30 30 H 1.00901 * 111.00403 * 278.69175 * 8 7 6 31 31 H 0.97003 * 119.99707 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1170 -0.5870 1.3497 6 6 1.3118 -0.1953 2.5074 7 6 1.0971 -1.4802 3.3461 8 7 0.7940 -2.5096 2.3191 9 6 1.6924 -2.2199 1.1805 10 1 2.6015 -2.8160 1.2599 11 6 0.9906 -2.5251 -0.1178 12 1 0.8860 -1.7562 -0.8688 13 6 0.4770 -3.7844 -0.3443 14 7 0.6044 -4.7209 0.5703 15 14 -0.3996 -4.1606 -1.9504 16 1 0.5325 -3.9437 -3.0858 17 1 -0.8542 -5.5743 -1.9469 18 1 -1.5737 -3.2630 -2.0954 19 1 -0.3633 0.6869 0.7643 20 1 -0.3634 0.3185 -0.9770 21 1 -0.3634 -1.0054 0.2127 22 1 1.8933 -0.5138 -0.8899 23 1 1.6098 1.9799 0.8451 24 1 3.1268 1.4436 0.0838 25 1 1.7468 1.9316 -0.9289 26 1 1.9375 0.5167 3.0458 27 1 0.3573 0.2578 2.2395 28 1 2.0035 -1.7382 3.8936 29 1 0.2557 -1.3582 4.0284 30 1 -0.1736 -2.4649 2.0367 31 1 0.2428 -5.6068 0.4110 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260631113.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:19 Heat of formation + Delta-G solvation = -14.949531 kcal Electronic energy + Delta-G solvation = -12009.977164 eV Core-core repulsion = 10097.517127 eV Total energy + Delta-G solvation = -1912.460037 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.24704 -35.27058 -34.43625 -30.27480 -29.12097 -27.97628 -25.91490 -22.81260 -22.04264 -19.71104 -18.10911 -16.80636 -16.23677 -15.82262 -15.50225 -14.65148 -14.33100 -13.81703 -13.75998 -13.00330 -12.78013 -12.65005 -12.41967 -12.32859 -12.20334 -11.74932 -11.64078 -11.46132 -10.98853 -10.94211 -10.51393 -10.38217 -8.70031 -7.94441 -6.06488 1.45418 1.46548 1.52666 2.49746 3.28782 3.94495 4.05462 4.12530 4.43766 4.49949 4.57245 4.67524 4.88203 4.92245 4.98954 5.01119 5.10862 5.20039 5.25996 5.38309 5.47734 5.52748 5.70684 5.78909 5.86417 5.99868 6.30367 6.59864 7.11687 7.22292 7.59717 9.10186 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.040784 B = 0.017831 C = 0.013765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.377272 B = 1569.929059 C = 2033.620654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.073 4.073 3 C -0.139 4.139 4 C -0.102 4.102 5 H 0.047 0.953 6 C -0.142 4.142 7 C 0.032 3.968 8 N -0.664 5.664 9 C 0.205 3.795 10 H -0.015 1.015 11 C -0.544 4.544 12 H 0.089 0.911 13 C 0.021 3.979 14 N -0.895 5.895 15 Si 0.938 3.062 16 H -0.276 1.276 17 H -0.294 1.294 18 H -0.268 1.268 19 H 0.052 0.948 20 H 0.042 0.958 21 H 0.070 0.930 22 H 0.055 0.945 23 H 0.057 0.943 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.324 0.676 31 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.527 10.060 0.460 10.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.091 4.091 3 C -0.196 4.196 4 C -0.122 4.122 5 H 0.065 0.935 6 C -0.181 4.181 7 C -0.098 4.098 8 N -0.292 5.292 9 C 0.096 3.904 10 H 0.003 0.997 11 C -0.583 4.583 12 H 0.107 0.893 13 C -0.180 4.180 14 N -0.532 5.532 15 Si 0.765 3.235 16 H -0.201 1.201 17 H -0.220 1.220 18 H -0.193 1.193 19 H 0.071 0.929 20 H 0.061 0.939 21 H 0.088 0.912 22 H 0.073 0.927 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.139 0.861 31 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.176 9.294 0.810 9.331 hybrid contribution -0.602 -0.018 -1.144 1.293 sum -0.778 9.276 -0.334 9.315 Atomic orbital electron populations 1.22224 0.95539 1.02964 0.99992 1.20939 0.96065 0.94848 0.97280 1.21856 1.00483 0.95665 1.01617 1.22385 0.97754 0.96888 0.95218 0.93491 1.23198 1.00921 0.98131 0.95859 1.23167 1.00309 0.90547 0.95801 1.62788 1.08243 1.46923 1.11212 1.19657 0.91713 0.89408 0.89585 0.99741 1.22115 1.36721 0.96809 1.02628 0.89326 1.25793 0.97175 0.96586 0.98463 1.70285 1.45338 1.02933 1.34663 0.85932 0.79416 0.76767 0.81385 1.20140 1.22036 1.19259 0.92945 0.93866 0.91172 0.92670 0.92399 0.93129 0.92469 0.90996 0.90673 0.92485 0.91055 0.86073 0.93887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.39 7.29 71.98 0.52 -4.86 16 2 C -0.07 -2.64 2.18 -10.79 -0.02 -2.66 16 3 C -0.14 -3.94 9.00 71.98 0.65 -3.30 16 4 C -0.10 -4.07 2.78 -9.91 -0.03 -4.10 16 5 H 0.05 1.85 8.13 -2.39 -0.02 1.83 16 6 C -0.14 -4.85 5.85 31.80 0.19 -4.67 16 7 C 0.03 1.21 7.55 86.65 0.65 1.87 16 8 N -0.66 -32.11 6.55 -484.04 -3.17 -35.28 16 9 C 0.20 10.27 3.14 44.31 0.14 10.41 16 10 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 11 C -0.54 -28.39 5.59 25.60 0.14 -28.25 16 12 H 0.09 4.39 3.87 -2.91 -0.01 4.37 16 13 C 0.02 1.17 5.30 84.65 0.45 1.62 16 14 N -0.89 -52.68 12.63 21.45 0.27 -52.41 16 15 Si 0.94 43.09 29.54 68.60 2.03 45.11 16 16 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 17 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 18 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 19 H 0.05 1.66 6.33 -2.39 -0.02 1.64 16 20 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 21 H 0.07 2.99 5.07 -2.38 -0.01 2.97 16 22 H 0.05 2.25 6.38 -2.39 -0.02 2.23 16 23 H 0.06 1.50 7.76 -2.39 -0.02 1.48 16 24 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 25 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.07 2.46 5.38 -2.38 -0.01 2.44 16 28 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 30 H 0.32 16.15 8.11 -89.69 -0.73 15.42 16 31 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -58.55 235.05 2.20 -56.35 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 0.38 Total: 20.17 kcal Atomic # 6 Polarization: -36.63 SS G_CDS: 2.69 Total: -33.93 kcal Atomic # 7 Polarization: -84.79 SS G_CDS: -2.90 Total: -87.69 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Total: -58.55 2.20 -56.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260631113.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.397 kcal (2) G-P(sol) polarization free energy of solvation -58.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds