Wall clock time and date at job start Mon Mar 30 2020 02:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47342 * 2 1 4 4 C 1.53005 * 109.47250 * 119.99929 * 2 1 3 5 5 H 1.08996 * 110.35170 * 308.58428 * 4 2 1 6 6 C 1.54590 * 110.30993 * 186.43656 * 4 2 1 7 7 C 1.54935 * 103.08154 * 219.21502 * 6 4 2 8 8 N 1.48534 * 103.22708 * 37.32779 * 7 6 4 9 9 C 1.47901 * 105.81879 * 320.79275 * 8 7 6 10 10 H 1.09006 * 109.91752 * 265.97671 * 9 8 7 11 11 C 1.50697 * 109.91882 * 144.68561 * 9 8 7 12 12 H 1.07999 * 120.00296 * 245.47238 * 11 9 8 13 13 C 1.37882 * 120.00111 * 65.46136 * 11 9 8 14 14 N 1.31513 * 119.99758 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 120.00102 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47193 * 59.99841 * 15 13 11 17 17 H 1.48496 * 109.47124 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46876 * 300.00339 * 15 13 11 19 19 H 1.08999 * 109.47214 * 309.20550 * 1 2 3 20 20 H 1.09000 * 109.46983 * 69.20686 * 1 2 3 21 21 H 1.09003 * 109.46909 * 189.19989 * 1 2 3 22 22 H 1.09005 * 109.47229 * 239.99532 * 2 1 3 23 23 H 1.08998 * 109.47015 * 59.99425 * 3 2 1 24 24 H 1.08999 * 109.47563 * 180.02562 * 3 2 1 25 25 H 1.09002 * 109.47150 * 299.99985 * 3 2 1 26 26 H 1.08996 * 110.72190 * 100.76808 * 6 4 2 27 27 H 1.08996 * 110.72802 * 337.66395 * 6 4 2 28 28 H 1.09004 * 110.67134 * 155.76050 * 7 6 4 29 29 H 1.08997 * 110.67043 * 278.72161 * 7 6 4 30 30 H 1.00903 * 110.99688 * 200.27745 * 8 7 6 31 31 H 0.97005 * 120.00058 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.5655 -0.3144 2.1422 6 6 3.5771 -0.5933 1.3527 7 6 4.0120 -1.9911 1.8603 8 7 3.0874 -2.9127 1.1518 9 6 1.7717 -2.2371 1.1446 10 1 1.1783 -2.5708 1.9959 11 6 1.0465 -2.5392 -0.1414 12 1 0.8406 -1.7457 -0.8445 13 6 0.6459 -3.8287 -0.4205 14 7 0.8964 -4.7949 0.4358 15 14 -0.2524 -4.2032 -2.0149 16 1 0.6107 -3.8383 -3.1669 17 1 -0.5719 -5.6522 -2.0744 18 1 -1.5108 -3.4166 -2.0705 19 1 -0.3633 0.6496 0.7963 20 1 -0.3633 0.3648 -0.9607 21 1 -0.3633 -1.0145 0.1643 22 1 1.8933 -0.5139 -0.8900 23 1 1.6766 1.9563 0.8899 24 1 3.1300 1.4425 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 3.8524 0.1802 2.0697 27 1 4.0135 -0.3847 0.3760 28 1 5.0462 -2.1962 1.5839 29 1 3.8817 -2.0661 2.9398 30 1 3.0339 -3.8036 1.6225 31 1 0.6142 -5.7020 0.2397 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260631119.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:21 Heat of formation + Delta-G solvation = -1.535151 kcal Electronic energy + Delta-G solvation = -11887.112732 eV Core-core repulsion = 9975.234386 eV Total energy + Delta-G solvation = -1911.878346 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.23116 -33.87647 -32.42534 -28.75175 -27.68843 -26.09120 -24.18421 -20.70152 -20.12723 -18.60248 -15.95057 -15.63125 -14.43816 -14.02253 -13.60317 -12.86491 -12.43279 -12.23512 -11.70757 -11.58253 -11.51030 -10.95263 -10.82921 -10.58447 -10.40978 -10.36819 -9.87034 -9.80926 -9.55468 -8.97431 -8.69882 -8.36660 -6.87909 -5.92095 -3.89976 3.38275 3.42926 3.45867 4.52641 5.29591 5.58067 5.64466 5.72910 5.84900 5.94126 6.11884 6.23689 6.30208 6.42401 6.48532 6.52113 6.54433 6.65098 6.83035 6.93026 6.96028 7.03970 7.36640 7.45146 7.54017 8.03869 8.29582 8.62893 8.95069 9.12967 9.73205 11.19783 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.037904 B = 0.017885 C = 0.013242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.539371 B = 1565.173931 C = 2113.905150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.073 4.073 3 C -0.149 4.149 4 C -0.085 4.085 5 H 0.046 0.954 6 C -0.114 4.114 7 C 0.028 3.972 8 N -0.651 5.651 9 C 0.205 3.795 10 H 0.004 0.996 11 C -0.505 4.505 12 H 0.082 0.918 13 C 0.069 3.931 14 N -0.892 5.892 15 Si 0.886 3.114 16 H -0.277 1.277 17 H -0.290 1.290 18 H -0.278 1.278 19 H 0.030 0.970 20 H 0.034 0.966 21 H 0.099 0.901 22 H 0.084 0.916 23 H 0.042 0.958 24 H 0.048 0.952 25 H 0.042 0.958 26 H 0.047 0.953 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.015 0.985 30 H 0.332 0.668 31 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.856 7.270 0.924 7.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.092 4.092 3 C -0.206 4.206 4 C -0.104 4.104 5 H 0.065 0.935 6 C -0.152 4.152 7 C -0.102 4.102 8 N -0.282 5.282 9 C 0.098 3.902 10 H 0.022 0.978 11 C -0.543 4.543 12 H 0.100 0.900 13 C -0.133 4.133 14 N -0.531 5.531 15 Si 0.714 3.286 16 H -0.203 1.203 17 H -0.216 1.216 18 H -0.204 1.204 19 H 0.049 0.951 20 H 0.053 0.947 21 H 0.117 0.883 22 H 0.102 0.898 23 H 0.061 0.939 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.033 0.967 30 H 0.148 0.852 31 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.020 7.243 0.273 7.525 hybrid contribution -0.697 -0.425 0.173 0.835 sum 1.323 6.818 0.446 6.960 Atomic orbital electron populations 1.22256 0.95766 1.04446 0.98878 1.21054 0.95628 0.92994 0.99498 1.21982 1.00464 0.97991 1.00175 1.22071 0.93605 0.98506 0.96251 0.93500 1.22477 0.96865 0.95747 1.00065 1.22995 0.97918 0.94482 0.94824 1.63504 1.09323 1.04296 1.51053 1.19806 0.86918 0.86809 0.96692 0.97793 1.21627 1.34109 0.93947 1.04640 0.90003 1.25019 0.95609 0.96597 0.96124 1.69887 1.47111 1.00599 1.35528 0.86768 0.80079 0.77014 0.84712 1.20309 1.21623 1.20409 0.95093 0.94683 0.88254 0.89756 0.93908 0.93286 0.93890 0.93474 0.91591 0.92522 0.96696 0.85249 0.93252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.01 8.17 37.16 0.30 -2.71 16 2 C -0.07 -1.43 1.88 -90.62 -0.17 -1.60 16 3 C -0.15 -2.39 8.84 37.16 0.33 -2.06 16 4 C -0.09 -1.77 2.59 -89.10 -0.23 -2.00 16 5 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 6 C -0.11 -2.14 5.47 -24.87 -0.14 -2.28 16 7 C 0.03 0.56 7.55 -1.90 -0.01 0.55 16 8 N -0.65 -15.83 6.87 -104.17 -0.72 -16.55 16 9 C 0.20 5.10 2.97 -67.64 -0.20 4.90 16 10 H 0.00 0.12 8.14 -51.93 -0.42 -0.30 16 11 C -0.50 -13.39 6.06 -34.44 -0.21 -13.60 16 12 H 0.08 2.09 3.68 -52.49 -0.19 1.89 16 13 C 0.07 1.89 5.42 -17.82 -0.10 1.80 16 14 N -0.89 -25.60 12.69 55.43 0.70 -24.90 16 15 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H 0.03 0.54 8.12 -51.93 -0.42 0.11 16 20 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 21 H 0.10 2.20 5.38 -51.93 -0.28 1.92 16 22 H 0.08 1.84 6.40 -51.93 -0.33 1.51 16 23 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.75 6.66 -51.93 -0.35 0.40 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.07 1.25 7.17 -51.93 -0.37 0.88 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.33 8.38 8.51 -39.29 -0.33 8.04 16 31 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 LS Contribution 238.75 15.07 3.60 3.60 Total: -1.00 -27.69 238.75 -6.66 -34.34 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -4.80 Total: 4.15 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: -0.42 Total: -17.01 kcal Atomic # 7 Polarization: -41.43 SS G_CDS: -0.01 Total: -41.45 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -27.69 -6.66 -34.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260631119.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.806 kcal (2) G-P(sol) polarization free energy of solvation -27.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds