Wall clock time and date at job start Mon Mar 30 2020 02:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47342 * 2 1 4 4 C 1.53005 * 109.47250 * 119.99929 * 2 1 3 5 5 H 1.08996 * 110.35170 * 308.58428 * 4 2 1 6 6 C 1.54590 * 110.30993 * 186.43656 * 4 2 1 7 7 C 1.54935 * 103.08154 * 219.21502 * 6 4 2 8 8 N 1.48534 * 103.22708 * 37.32779 * 7 6 4 9 9 C 1.47901 * 105.81879 * 320.79275 * 8 7 6 10 10 H 1.09006 * 109.91752 * 265.97671 * 9 8 7 11 11 C 1.50697 * 109.91882 * 144.68561 * 9 8 7 12 12 H 1.07999 * 120.00296 * 245.47238 * 11 9 8 13 13 C 1.37882 * 120.00111 * 65.46136 * 11 9 8 14 14 N 1.31513 * 119.99758 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 120.00102 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47193 * 59.99841 * 15 13 11 17 17 H 1.48496 * 109.47124 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46876 * 300.00339 * 15 13 11 19 19 H 1.08999 * 109.47214 * 309.20550 * 1 2 3 20 20 H 1.09000 * 109.46983 * 69.20686 * 1 2 3 21 21 H 1.09003 * 109.46909 * 189.19989 * 1 2 3 22 22 H 1.09005 * 109.47229 * 239.99532 * 2 1 3 23 23 H 1.08998 * 109.47015 * 59.99425 * 3 2 1 24 24 H 1.08999 * 109.47563 * 180.02562 * 3 2 1 25 25 H 1.09002 * 109.47150 * 299.99985 * 3 2 1 26 26 H 1.08996 * 110.72190 * 100.76808 * 6 4 2 27 27 H 1.08996 * 110.72802 * 337.66395 * 6 4 2 28 28 H 1.09004 * 110.67134 * 155.76050 * 7 6 4 29 29 H 1.08997 * 110.67043 * 278.72161 * 7 6 4 30 30 H 1.00903 * 110.99688 * 200.27745 * 8 7 6 31 31 H 0.97005 * 120.00058 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.5655 -0.3144 2.1422 6 6 3.5771 -0.5933 1.3527 7 6 4.0120 -1.9911 1.8603 8 7 3.0874 -2.9127 1.1518 9 6 1.7717 -2.2371 1.1446 10 1 1.1783 -2.5708 1.9959 11 6 1.0465 -2.5392 -0.1414 12 1 0.8406 -1.7457 -0.8445 13 6 0.6459 -3.8287 -0.4205 14 7 0.8964 -4.7949 0.4358 15 14 -0.2524 -4.2032 -2.0149 16 1 0.6107 -3.8383 -3.1669 17 1 -0.5719 -5.6522 -2.0744 18 1 -1.5108 -3.4166 -2.0705 19 1 -0.3633 0.6496 0.7963 20 1 -0.3633 0.3648 -0.9607 21 1 -0.3633 -1.0145 0.1643 22 1 1.8933 -0.5139 -0.8900 23 1 1.6766 1.9563 0.8899 24 1 3.1300 1.4425 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 3.8524 0.1802 2.0697 27 1 4.0135 -0.3847 0.3760 28 1 5.0462 -2.1962 1.5839 29 1 3.8817 -2.0661 2.9398 30 1 3.0339 -3.8036 1.6225 31 1 0.6142 -5.7020 0.2397 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260631119.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:20 Heat of formation + Delta-G solvation = -19.592325 kcal Electronic energy + Delta-G solvation = -11887.895750 eV Core-core repulsion = 9975.234386 eV Total energy + Delta-G solvation = -1912.661364 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.92863 -35.48512 -34.45002 -30.53682 -29.35967 -27.58396 -26.11580 -22.30715 -21.83539 -20.35862 -17.87923 -17.40990 -16.31954 -15.70543 -15.24067 -14.44908 -14.14808 -13.99606 -13.56635 -13.09885 -12.86940 -12.74302 -12.71484 -12.28743 -12.09890 -11.91265 -11.57298 -11.49285 -11.10911 -10.77214 -10.52539 -10.45352 -8.79549 -8.00411 -6.02481 1.44849 1.46737 1.52351 2.51350 3.26355 3.99269 4.07480 4.12575 4.24620 4.49100 4.60928 4.70026 4.82769 4.89818 4.97194 5.05423 5.09938 5.20879 5.23400 5.34890 5.35723 5.45776 5.63252 5.80699 5.88265 5.96456 6.38248 6.65685 6.96518 7.11350 7.62818 9.10698 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.037904 B = 0.017885 C = 0.013242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.539371 B = 1565.173931 C = 2113.905150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.072 4.072 3 C -0.140 4.140 4 C -0.084 4.084 5 H 0.052 0.948 6 C -0.104 4.104 7 C 0.025 3.975 8 N -0.669 5.669 9 C 0.199 3.801 10 H -0.038 1.038 11 C -0.506 4.506 12 H 0.091 0.909 13 C 0.013 3.987 14 N -0.926 5.926 15 Si 0.943 3.057 16 H -0.275 1.275 17 H -0.294 1.294 18 H -0.268 1.268 19 H 0.048 0.952 20 H 0.048 0.952 21 H 0.063 0.937 22 H 0.057 0.943 23 H 0.055 0.945 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.024 0.976 30 H 0.319 0.681 31 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.342 9.339 0.425 9.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.090 4.090 3 C -0.197 4.197 4 C -0.103 4.103 5 H 0.070 0.930 6 C -0.142 4.142 7 C -0.104 4.104 8 N -0.298 5.298 9 C 0.092 3.908 10 H -0.020 1.020 11 C -0.544 4.544 12 H 0.109 0.891 13 C -0.185 4.185 14 N -0.567 5.567 15 Si 0.770 3.230 16 H -0.200 1.200 17 H -0.220 1.220 18 H -0.194 1.194 19 H 0.067 0.933 20 H 0.068 0.932 21 H 0.082 0.918 22 H 0.076 0.924 23 H 0.074 0.926 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.099 0.901 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.042 0.958 30 H 0.133 0.867 31 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.509 9.337 -0.235 9.671 hybrid contribution -0.833 -1.046 0.382 1.391 sum 1.676 8.291 0.148 8.460 Atomic orbital electron populations 1.22146 0.95844 1.02674 1.00367 1.20972 0.95603 0.95074 0.97369 1.21875 1.01042 0.95218 1.01579 1.22033 0.95473 0.95480 0.97307 0.92965 1.22463 0.94922 0.95754 1.01065 1.23129 0.97799 0.94335 0.95146 1.63417 1.09657 1.04571 1.52174 1.19782 0.86823 0.89837 0.94391 1.01993 1.22048 1.33236 0.94014 1.05124 0.89125 1.25764 0.96917 0.96835 0.98991 1.70029 1.48801 1.00637 1.37189 0.85844 0.79328 0.76552 0.81252 1.20050 1.21978 1.19356 0.93299 0.93243 0.91783 0.92443 0.92580 0.92330 0.92448 0.90112 0.91422 0.90805 0.95777 0.86654 0.93756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.64 8.17 71.98 0.59 -5.05 16 2 C -0.07 -2.64 1.88 -10.79 -0.02 -2.66 16 3 C -0.14 -3.95 8.84 71.98 0.64 -3.31 16 4 C -0.08 -3.36 2.59 -9.81 -0.03 -3.38 16 5 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 6 C -0.10 -3.63 5.47 31.80 0.17 -3.46 16 7 C 0.03 0.98 7.55 86.65 0.65 1.63 16 8 N -0.67 -32.77 6.87 -483.49 -3.32 -36.09 16 9 C 0.20 10.07 2.97 44.42 0.13 10.20 16 10 H -0.04 -2.17 8.14 -2.38 -0.02 -2.19 16 11 C -0.51 -27.18 6.06 25.60 0.16 -27.02 16 12 H 0.09 4.62 3.68 -2.91 -0.01 4.61 16 13 C 0.01 0.74 5.42 84.66 0.46 1.20 16 14 N -0.93 -54.76 12.69 21.45 0.27 -54.48 16 15 Si 0.94 44.45 29.54 68.60 2.03 46.47 16 16 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 17 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 18 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 19 H 0.05 1.59 8.12 -2.39 -0.02 1.57 16 20 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 21 H 0.06 2.82 5.38 -2.39 -0.01 2.80 16 22 H 0.06 2.43 6.40 -2.38 -0.02 2.41 16 23 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.06 1.55 6.66 -2.39 -0.02 1.53 16 25 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.07 2.34 7.17 -2.39 -0.02 2.33 16 28 H 0.07 2.58 8.14 -2.38 -0.02 2.56 16 29 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.32 16.62 8.51 -89.69 -0.76 15.85 16 31 H 0.25 14.52 8.31 -92.70 -0.77 13.75 16 Total: -1.00 -59.74 238.75 2.07 -57.67 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 0.34 Total: 18.29 kcal Atomic # 6 Polarization: -34.61 SS G_CDS: 2.75 Total: -31.85 kcal Atomic # 7 Polarization: -87.53 SS G_CDS: -3.05 Total: -90.58 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -59.74 2.07 -57.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260631119.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.076 kcal (2) G-P(sol) polarization free energy of solvation -59.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds