Wall clock time and date at job start Mon Mar 30 2020 01:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47297 * 2 1 4 4 C 1.53004 * 109.46832 * 120.00179 * 2 1 3 5 5 H 1.09001 * 115.55550 * 272.98959 * 4 2 1 6 6 C 1.52993 * 117.50312 * 58.67810 * 4 2 1 7 7 C 1.52996 * 60.03306 * 107.50317 * 6 4 2 8 8 N 1.46892 * 117.50012 * 107.50322 * 7 6 4 9 9 C 1.53006 * 117.49953 * 252.50112 * 7 6 4 10 10 C 1.50699 * 109.47041 * 309.16094 * 9 7 6 11 11 H 1.08007 * 120.00034 * 355.49308 * 10 9 7 12 12 C 1.37879 * 120.00034 * 175.49952 * 10 9 7 13 13 N 1.31513 * 119.99887 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 119.99915 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47360 * 59.99872 * 14 12 10 16 16 H 1.48497 * 109.47243 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47344 * 299.99915 * 14 12 10 18 18 H 1.08997 * 109.47071 * 300.00336 * 1 2 3 19 19 H 1.09006 * 109.46578 * 60.00221 * 1 2 3 20 20 H 1.08998 * 109.46910 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47071 * 239.99663 * 2 1 3 22 22 H 1.09003 * 109.47175 * 186.63084 * 3 2 1 23 23 H 1.08999 * 109.47034 * 306.62759 * 3 2 1 24 24 H 1.08993 * 109.47064 * 66.62748 * 3 2 1 25 25 H 1.09003 * 117.49627 * 0.02562 * 6 4 2 26 26 H 1.08999 * 117.50032 * 215.00435 * 6 4 2 27 27 H 1.00905 * 111.00346 * 88.97423 * 8 7 6 28 28 H 1.00899 * 111.00209 * 212.93154 * 8 7 6 29 29 H 1.08998 * 109.46810 * 69.15679 * 9 7 6 30 30 H 1.08998 * 109.47015 * 189.15417 * 9 7 6 31 31 H 0.97003 * 119.99909 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 2.1483 -0.1011 2.1391 6 6 1.6103 -2.1759 1.4501 7 6 3.0511 -1.8530 1.0492 8 7 4.0931 -2.0204 2.0709 9 6 3.4749 -2.1768 -0.3848 10 6 3.1054 -3.6016 -0.7082 11 1 2.6837 -4.2370 0.0566 12 6 3.3057 -4.0940 -1.9804 13 7 3.8188 -3.3201 -2.9118 14 14 2.8484 -5.8602 -2.3810 15 1 1.3966 -6.0619 -2.1428 16 1 3.1594 -6.1411 -3.8056 17 1 3.6250 -6.7817 -1.5133 18 1 -0.3633 0.5139 0.8899 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3633 -1.0277 -0.0005 21 1 1.8933 -0.5139 -0.8899 22 1 3.1236 1.4448 -0.1187 23 1 1.5831 1.9894 -0.8247 24 1 1.7768 1.9209 0.9433 25 1 0.9646 -2.6192 0.6920 26 1 1.4356 -2.5126 2.4720 27 1 4.4622 -2.9595 2.0606 28 1 4.8295 -1.3412 1.9511 29 1 2.9658 -1.5039 -1.0748 30 1 4.5530 -2.0499 -0.4825 31 1 3.9594 -3.6664 -3.8069 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260792034.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:04 Heat of formation + Delta-G solvation = 0.924961 kcal Electronic energy + Delta-G solvation = -11457.560757 eV Core-core repulsion = 9545.789089 eV Total energy + Delta-G solvation = -1911.771667 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.26193 -33.80047 -32.55659 -29.79156 -27.95975 -26.66649 -23.33677 -22.35910 -19.52066 -17.89363 -16.23642 -15.04436 -14.79192 -14.45791 -13.94206 -13.43347 -12.72402 -12.39006 -12.07162 -11.82486 -11.44545 -11.24998 -10.85489 -10.80760 -10.63687 -10.44126 -10.02470 -9.82446 -9.32734 -9.26678 -8.44128 -8.36343 -7.81947 -6.01974 -4.03620 3.31700 3.36344 3.39003 4.41481 4.68636 5.05941 5.33441 5.51806 5.53882 5.73791 5.86817 6.02637 6.08681 6.24401 6.29095 6.35599 6.43302 6.51817 6.70306 6.77830 6.84352 6.94883 7.18037 7.57897 7.64781 7.93799 8.10292 8.16399 8.43360 9.02436 9.59864 11.08588 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.040528 B = 0.012572 C = 0.011541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.716711 B = 2226.638334 C = 2425.449183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.083 4.083 3 C -0.138 4.138 4 C -0.143 4.143 5 H 0.089 0.911 6 C -0.152 4.152 7 C 0.060 3.940 8 N -0.821 5.821 9 C 0.025 3.975 10 C -0.511 4.511 11 H 0.057 0.943 12 C 0.056 3.944 13 N -0.897 5.897 14 Si 0.891 3.109 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.278 1.278 18 H 0.045 0.955 19 H 0.046 0.954 20 H 0.056 0.944 21 H 0.096 0.904 22 H 0.052 0.948 23 H 0.047 0.953 24 H 0.045 0.955 25 H 0.095 0.905 26 H 0.078 0.922 27 H 0.343 0.657 28 H 0.332 0.668 29 H 0.040 0.960 30 H 0.011 0.989 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.345 5.121 5.162 8.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.101 4.101 3 C -0.195 4.195 4 C -0.162 4.162 5 H 0.107 0.893 6 C -0.190 4.190 7 C -0.033 4.033 8 N -0.348 5.348 9 C -0.013 4.013 10 C -0.550 4.550 11 H 0.075 0.925 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.719 3.281 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.203 1.203 18 H 0.064 0.936 19 H 0.065 0.935 20 H 0.075 0.925 21 H 0.114 0.886 22 H 0.071 0.929 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.114 0.886 26 H 0.097 0.903 27 H 0.156 0.844 28 H 0.143 0.857 29 H 0.058 0.942 30 H 0.029 0.971 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.867 5.285 5.513 8.561 hybrid contribution 0.468 -1.233 -1.066 1.696 sum -3.400 4.052 4.447 6.910 Atomic orbital electron populations 1.21745 0.95889 1.01605 1.00287 1.20941 0.94931 0.95382 0.98849 1.21757 1.00953 0.96302 1.00506 1.22457 1.04697 0.90795 0.98220 0.89260 1.22928 0.98332 0.96846 1.00876 1.21829 0.87979 1.00687 0.92792 1.58677 1.16429 1.08991 1.50740 1.19352 0.96198 0.97155 0.88631 1.21173 1.41367 0.96800 0.95610 0.92520 1.25022 0.95373 0.97555 0.96513 1.69948 1.44735 1.35910 1.03000 0.86675 0.79008 0.85260 0.77177 1.20239 1.21383 1.20316 0.93615 0.93506 0.92540 0.88594 0.92930 0.93345 0.93548 0.88647 0.90329 0.84414 0.85655 0.94245 0.97059 0.92973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.02 37.16 0.34 -1.82 16 2 C -0.08 -1.47 2.92 -90.62 -0.26 -1.73 16 3 C -0.14 -2.11 9.18 37.16 0.34 -1.77 16 4 C -0.14 -2.66 5.10 -90.58 -0.46 -3.12 16 5 H 0.09 1.60 8.09 -51.93 -0.42 1.18 16 6 C -0.15 -3.03 8.61 -26.74 -0.23 -3.26 16 7 C 0.06 1.26 2.66 -131.57 -0.35 0.91 16 8 N -0.82 -15.46 9.70 0.77 0.01 -15.46 16 9 C 0.02 0.63 5.11 -27.88 -0.14 0.49 16 10 C -0.51 -14.09 8.47 -34.44 -0.29 -14.38 16 11 H 0.06 1.55 7.41 -52.48 -0.39 1.16 16 12 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 13 N -0.90 -26.51 13.29 55.43 0.74 -25.78 16 14 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 19 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 20 H 0.06 0.92 7.21 -51.93 -0.37 0.55 16 21 H 0.10 2.03 5.04 -51.93 -0.26 1.76 16 22 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.64 8.13 -51.93 -0.42 0.22 16 25 H 0.10 2.02 7.24 -51.93 -0.38 1.64 16 26 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 27 H 0.34 6.48 9.08 -39.29 -0.36 6.12 16 28 H 0.33 5.74 9.08 -39.29 -0.36 5.38 16 29 H 0.04 1.06 5.00 -51.93 -0.26 0.80 16 30 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 253.79 15.07 3.82 3.82 Total: -1.00 -28.66 253.79 -6.50 -35.16 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -4.89 Total: 8.88 kcal Atomic # 6 Polarization: -22.03 SS G_CDS: -1.16 Total: -23.20 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 0.74 Total: -41.24 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -28.66 -6.50 -35.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260792034.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.084 kcal (2) G-P(sol) polarization free energy of solvation -28.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds