Wall clock time and date at job start Mon Mar 30 2020 01:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47297 * 2 1 4 4 C 1.53004 * 109.46832 * 120.00179 * 2 1 3 5 5 H 1.09001 * 115.55550 * 272.98959 * 4 2 1 6 6 C 1.52993 * 117.50312 * 58.67810 * 4 2 1 7 7 C 1.52996 * 60.03306 * 107.50317 * 6 4 2 8 8 N 1.46892 * 117.50012 * 107.50322 * 7 6 4 9 9 C 1.53006 * 117.49953 * 252.50112 * 7 6 4 10 10 C 1.50699 * 109.47041 * 309.16094 * 9 7 6 11 11 H 1.08007 * 120.00034 * 355.49308 * 10 9 7 12 12 C 1.37879 * 120.00034 * 175.49952 * 10 9 7 13 13 N 1.31513 * 119.99887 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 119.99915 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47360 * 59.99872 * 14 12 10 16 16 H 1.48497 * 109.47243 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47344 * 299.99915 * 14 12 10 18 18 H 1.08997 * 109.47071 * 300.00336 * 1 2 3 19 19 H 1.09006 * 109.46578 * 60.00221 * 1 2 3 20 20 H 1.08998 * 109.46910 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47071 * 239.99663 * 2 1 3 22 22 H 1.09003 * 109.47175 * 186.63084 * 3 2 1 23 23 H 1.08999 * 109.47034 * 306.62759 * 3 2 1 24 24 H 1.08993 * 109.47064 * 66.62748 * 3 2 1 25 25 H 1.09003 * 117.49627 * 0.02562 * 6 4 2 26 26 H 1.08999 * 117.50032 * 215.00435 * 6 4 2 27 27 H 1.00905 * 111.00346 * 88.97423 * 8 7 6 28 28 H 1.00899 * 111.00209 * 212.93154 * 8 7 6 29 29 H 1.08998 * 109.46810 * 69.15679 * 9 7 6 30 30 H 1.08998 * 109.47015 * 189.15417 * 9 7 6 31 31 H 0.97003 * 119.99909 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 2.1483 -0.1011 2.1391 6 6 1.6103 -2.1759 1.4501 7 6 3.0511 -1.8530 1.0492 8 7 4.0931 -2.0204 2.0709 9 6 3.4749 -2.1768 -0.3848 10 6 3.1054 -3.6016 -0.7082 11 1 2.6837 -4.2370 0.0566 12 6 3.3057 -4.0940 -1.9804 13 7 3.8188 -3.3201 -2.9118 14 14 2.8484 -5.8602 -2.3810 15 1 1.3966 -6.0619 -2.1428 16 1 3.1594 -6.1411 -3.8056 17 1 3.6250 -6.7817 -1.5133 18 1 -0.3633 0.5139 0.8899 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3633 -1.0277 -0.0005 21 1 1.8933 -0.5139 -0.8899 22 1 3.1236 1.4448 -0.1187 23 1 1.5831 1.9894 -0.8247 24 1 1.7768 1.9209 0.9433 25 1 0.9646 -2.6192 0.6920 26 1 1.4356 -2.5126 2.4720 27 1 4.4622 -2.9595 2.0606 28 1 4.8295 -1.3412 1.9511 29 1 2.9658 -1.5039 -1.0748 30 1 4.5530 -2.0499 -0.4825 31 1 3.9594 -3.6664 -3.8069 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260792034.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:04 Heat of formation + Delta-G solvation = -17.488300 kcal Electronic energy + Delta-G solvation = -11458.359216 eV Core-core repulsion = 9545.789089 eV Total energy + Delta-G solvation = -1912.570126 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.85853 -35.38766 -34.54536 -31.30512 -30.01510 -27.91296 -25.37849 -23.85912 -21.06756 -19.53214 -18.36194 -16.72139 -16.55602 -16.12401 -15.56808 -14.83352 -14.34110 -14.07995 -13.76525 -13.35982 -12.98846 -12.93499 -12.66283 -12.59302 -12.06515 -12.00739 -11.91708 -11.52719 -11.08666 -10.86674 -10.49975 -10.13538 -9.48080 -8.18283 -6.27297 1.38389 1.40048 1.47911 2.39392 3.08184 3.13830 3.54110 4.05789 4.16880 4.31414 4.37997 4.59752 4.71065 4.85402 4.90612 5.03694 5.06176 5.08176 5.17344 5.30645 5.35751 5.50158 5.51550 5.60753 5.72910 5.87063 6.22098 6.47840 6.65530 6.87701 7.40321 8.92001 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.040528 B = 0.012572 C = 0.011541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.716711 B = 2226.638334 C = 2425.449183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.086 4.086 3 C -0.133 4.133 4 C -0.118 4.118 5 H 0.109 0.891 6 C -0.150 4.150 7 C 0.041 3.959 8 N -0.808 5.808 9 C 0.032 3.968 10 C -0.522 4.522 11 H 0.056 0.944 12 C 0.002 3.998 13 N -0.933 5.933 14 Si 0.957 3.043 15 H -0.269 1.269 16 H -0.285 1.285 17 H -0.269 1.269 18 H 0.067 0.933 19 H 0.057 0.943 20 H 0.043 0.957 21 H 0.055 0.945 22 H 0.041 0.959 23 H 0.060 0.940 24 H 0.068 0.932 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.342 0.658 28 H 0.340 0.660 29 H 0.021 0.979 30 H -0.018 1.018 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.281 5.314 6.267 9.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.105 4.105 3 C -0.190 4.190 4 C -0.137 4.137 5 H 0.127 0.873 6 C -0.188 4.188 7 C -0.053 4.053 8 N -0.335 5.335 9 C -0.007 4.007 10 C -0.560 4.560 11 H 0.074 0.926 12 C -0.195 4.195 13 N -0.573 5.573 14 Si 0.782 3.218 15 H -0.194 1.194 16 H -0.211 1.211 17 H -0.194 1.194 18 H 0.086 0.914 19 H 0.076 0.924 20 H 0.062 0.938 21 H 0.073 0.927 22 H 0.060 0.940 23 H 0.079 0.921 24 H 0.087 0.913 25 H 0.096 0.904 26 H 0.112 0.888 27 H 0.154 0.846 28 H 0.153 0.847 29 H 0.039 0.961 30 H 0.001 0.999 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.803 5.482 6.635 9.856 hybrid contribution 0.779 -1.259 -1.412 2.046 sum -4.024 4.222 5.223 7.829 Atomic orbital electron populations 1.21701 0.94034 1.01343 1.01985 1.20923 0.96533 0.96450 0.96573 1.21716 1.00278 0.94733 1.02302 1.22536 1.01863 0.90246 0.99063 0.87328 1.22891 0.96768 0.98066 1.01041 1.21590 0.89177 1.03572 0.90911 1.58713 1.16463 1.09243 1.49114 1.19199 0.94042 0.95955 0.91459 1.21505 1.40848 0.97909 0.95712 0.92569 1.25874 0.95351 1.01838 0.96483 1.70078 1.46004 1.37883 1.03366 0.85624 0.79033 0.80145 0.77008 1.19392 1.21078 1.19441 0.91355 0.92374 0.93809 0.92673 0.93994 0.92051 0.91306 0.90397 0.88810 0.84584 0.84731 0.96082 0.99926 0.92960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.92 9.02 71.98 0.65 -3.27 16 2 C -0.09 -2.98 2.92 -10.79 -0.03 -3.01 16 3 C -0.13 -3.80 9.18 71.98 0.66 -3.14 16 4 C -0.12 -4.21 5.10 -10.77 -0.05 -4.27 16 5 H 0.11 3.51 8.09 -2.39 -0.02 3.49 16 6 C -0.15 -5.81 8.61 30.59 0.26 -5.54 16 7 C 0.04 1.70 2.66 3.55 0.01 1.71 16 8 N -0.81 -29.60 9.70 -151.48 -1.47 -31.07 16 9 C 0.03 1.66 5.11 29.85 0.15 1.81 16 10 C -0.52 -29.18 8.47 25.60 0.22 -28.96 16 11 H 0.06 3.08 7.41 -2.91 -0.02 3.06 16 12 C 0.00 0.12 5.46 84.66 0.46 0.58 16 13 N -0.93 -56.36 13.29 21.45 0.28 -56.08 16 14 Si 0.96 44.44 29.54 68.60 2.03 46.47 16 15 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 16 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 17 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 18 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 19 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 20 H 0.04 1.38 7.21 -2.39 -0.02 1.36 16 21 H 0.06 2.39 5.04 -2.39 -0.01 2.38 16 22 H 0.04 1.26 8.14 -2.39 -0.02 1.25 16 23 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.07 1.66 8.13 -2.39 -0.02 1.64 16 25 H 0.08 3.28 7.24 -2.39 -0.02 3.27 16 26 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 27 H 0.34 12.67 9.08 -89.69 -0.81 11.85 16 28 H 0.34 11.44 9.08 -89.69 -0.81 10.63 16 29 H 0.02 1.18 5.00 -2.39 -0.01 1.17 16 30 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 31 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -61.09 253.79 2.66 -58.43 By element: Atomic # 1 Polarization: 26.85 SS G_CDS: -0.51 Total: 26.34 kcal Atomic # 6 Polarization: -46.42 SS G_CDS: 2.33 Total: -44.10 kcal Atomic # 7 Polarization: -85.96 SS G_CDS: -1.18 Total: -87.14 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -61.09 2.66 -58.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260792034.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.942 kcal (2) G-P(sol) polarization free energy of solvation -61.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds