Wall clock time and date at job start Mon Mar 30 2020 01:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52999 * 109.47190 * 2 1 4 4 C 1.52994 * 109.46799 * 240.00202 * 2 1 3 5 5 H 1.08998 * 115.55302 * 88.48273 * 4 2 1 6 6 C 1.53008 * 117.50165 * 302.80731 * 4 2 1 7 7 C 1.53007 * 117.49930 * 234.15368 * 4 2 1 8 8 N 1.46901 * 117.49667 * 214.98343 * 7 4 2 9 9 C 1.53001 * 117.49694 * 359.97438 * 7 4 2 10 10 C 1.50704 * 109.46964 * 61.40398 * 9 7 4 11 11 H 1.08007 * 119.99893 * 354.44069 * 10 9 7 12 12 C 1.37881 * 120.00157 * 174.43669 * 10 9 7 13 13 N 1.31513 * 120.00030 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 119.99656 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47193 * 90.00267 * 14 12 10 16 16 H 1.48501 * 109.46866 * 210.00179 * 14 12 10 17 17 H 1.48496 * 109.46967 * 329.99933 * 14 12 10 18 18 H 1.08999 * 109.46951 * 59.99736 * 1 2 3 19 19 H 1.08997 * 109.47044 * 179.97438 * 1 2 3 20 20 H 1.08999 * 109.47180 * 299.99738 * 1 2 3 21 21 H 1.08999 * 109.46951 * 120.00264 * 2 1 3 22 22 H 1.09001 * 109.46892 * 308.10728 * 3 2 1 23 23 H 1.09005 * 109.46451 * 68.10178 * 3 2 1 24 24 H 1.08999 * 109.46835 * 188.09804 * 3 2 1 25 25 H 1.09004 * 117.49503 * 0.02562 * 6 4 2 26 26 H 1.09000 * 117.49419 * 144.99893 * 6 4 2 27 27 H 1.00900 * 110.99787 * 185.43380 * 8 7 4 28 28 H 1.00897 * 111.00046 * 309.38213 * 8 7 4 29 29 H 1.08992 * 109.47060 * 181.40351 * 9 7 4 30 30 H 1.09000 * 109.47384 * 301.40835 * 9 7 4 31 31 H 0.96996 * 119.99401 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 1 2.1722 -0.0958 -2.1321 6 6 1.5822 -2.1647 -1.4681 7 6 3.0248 -1.8745 -1.0467 8 7 4.0758 -2.0544 -2.0572 9 6 3.4247 -2.2179 0.3897 10 6 2.2016 -2.6333 1.1660 11 1 1.2244 -2.5651 0.7111 12 6 2.3301 -3.1006 2.4568 13 7 1.2628 -3.4635 3.1341 14 14 4.0203 -3.2179 3.2436 15 1 4.3325 -1.9432 3.9384 16 1 4.0331 -4.3325 4.2249 17 1 5.0388 -3.4716 2.1932 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 1.8934 -0.5139 0.8900 22 1 1.5633 1.9964 -0.8086 23 1 1.7998 1.9127 0.9536 24 1 3.1205 1.4458 -0.1448 25 1 0.9173 -2.6003 -0.7222 26 1 1.4131 -2.4888 -2.4950 27 1 4.6119 -2.8899 -1.8765 28 1 3.6844 -2.0701 -2.9871 29 1 4.1446 -3.0363 0.3806 30 1 3.8743 -1.3437 0.8606 31 1 1.3534 -3.7925 4.0420 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260792036.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:06 Heat of formation + Delta-G solvation = 11.018865 kcal Electronic energy + Delta-G solvation = -11686.975787 eV Core-core repulsion = 9775.641825 eV Total energy + Delta-G solvation = -1911.333963 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.51857 -33.59764 -32.60979 -29.78072 -28.71982 -26.45815 -23.03407 -22.25846 -19.42269 -17.95437 -16.68830 -15.34155 -14.70221 -14.03066 -13.62169 -13.53009 -12.59929 -12.55889 -12.24539 -11.74302 -11.59043 -11.38087 -10.82352 -10.56021 -10.33397 -10.12828 -9.97424 -9.80403 -9.55111 -8.98535 -8.86813 -8.53684 -7.59949 -6.05305 -4.02659 3.30633 3.38515 3.42412 4.43721 4.62626 5.09083 5.26638 5.62181 5.72138 5.75863 5.90536 6.00648 6.15564 6.27137 6.46092 6.49873 6.58570 6.63430 6.72541 6.84334 7.02583 7.14109 7.18612 7.33670 7.57142 7.62505 7.90656 7.97314 8.55276 9.00653 9.55604 11.05668 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.034318 B = 0.016462 C = 0.013922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.712812 B = 1700.438579 C = 2010.710665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.083 4.083 3 C -0.139 4.139 4 C -0.129 4.129 5 H 0.081 0.919 6 C -0.216 4.216 7 C 0.075 3.925 8 N -0.818 5.818 9 C 0.024 3.976 10 C -0.521 4.521 11 H 0.093 0.907 12 C 0.070 3.930 13 N -0.899 5.899 14 Si 0.872 3.128 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.265 1.265 18 H 0.035 0.965 19 H 0.057 0.943 20 H 0.045 0.955 21 H 0.120 0.880 22 H 0.040 0.960 23 H 0.046 0.954 24 H 0.050 0.950 25 H 0.120 0.880 26 H 0.066 0.934 27 H 0.339 0.661 28 H 0.330 0.670 29 H 0.020 0.980 30 H 0.021 0.979 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.791 4.385 -6.568 8.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.101 4.101 3 C -0.196 4.196 4 C -0.148 4.148 5 H 0.099 0.901 6 C -0.255 4.255 7 C -0.018 4.018 8 N -0.344 5.344 9 C -0.014 4.014 10 C -0.558 4.558 11 H 0.111 0.889 12 C -0.132 4.132 13 N -0.538 5.538 14 Si 0.700 3.300 15 H -0.203 1.203 16 H -0.215 1.215 17 H -0.190 1.190 18 H 0.055 0.945 19 H 0.076 0.924 20 H 0.064 0.936 21 H 0.138 0.862 22 H 0.059 0.941 23 H 0.066 0.934 24 H 0.069 0.931 25 H 0.138 0.862 26 H 0.085 0.915 27 H 0.153 0.847 28 H 0.141 0.859 29 H 0.039 0.961 30 H 0.039 0.961 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.058 5.004 -6.132 8.178 hybrid contribution 0.309 -0.962 0.120 1.018 sum 2.367 4.042 -6.012 7.621 Atomic orbital electron populations 1.21674 0.96118 1.01601 0.99526 1.20985 0.94875 0.94634 0.99618 1.21795 1.00623 0.96977 1.00231 1.22354 1.03533 0.90218 0.98699 0.90072 1.23990 1.01895 0.99044 1.00577 1.21741 0.85152 1.01159 0.93762 1.58624 1.26446 1.44888 1.04474 1.19075 0.97522 0.96179 0.88641 1.21394 0.94052 1.42462 0.97918 0.88919 1.24986 0.96191 0.94811 0.97175 1.69893 1.28517 1.44120 1.11262 0.86899 0.85769 0.77906 0.79445 1.20273 1.21540 1.19022 0.94548 0.92398 0.93636 0.86191 0.94128 0.93445 0.93132 0.86172 0.91528 0.84743 0.85852 0.96140 0.96099 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 9.00 37.16 0.33 -2.08 16 2 C -0.08 -1.62 2.39 -90.62 -0.22 -1.84 16 3 C -0.14 -2.35 9.18 37.16 0.34 -2.01 16 4 C -0.13 -2.47 5.12 -90.61 -0.46 -2.93 16 5 H 0.08 1.47 8.09 -51.93 -0.42 1.05 16 6 C -0.22 -4.25 8.61 -26.69 -0.23 -4.48 16 7 C 0.07 1.52 3.29 -131.56 -0.43 1.09 16 8 N -0.82 -14.22 9.80 0.78 0.01 -14.21 16 9 C 0.02 0.56 3.69 -27.88 -0.10 0.46 16 10 C -0.52 -13.82 6.89 -34.44 -0.24 -14.06 16 11 H 0.09 2.57 4.43 -52.48 -0.23 2.34 16 12 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 13 N -0.90 -26.63 13.96 55.43 0.77 -25.86 16 14 Si 0.87 21.29 27.58 -169.99 -4.69 16.60 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 16 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 17 H -0.27 -6.30 6.38 56.52 0.36 -5.94 16 18 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 19 H 0.06 1.14 6.83 -51.93 -0.35 0.79 16 20 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 21 H 0.12 2.78 4.56 -51.93 -0.24 2.55 16 22 H 0.04 0.61 8.13 -51.93 -0.42 0.19 16 23 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 25 H 0.12 2.69 4.62 -51.93 -0.24 2.45 16 26 H 0.07 1.17 8.12 -51.93 -0.42 0.74 16 27 H 0.34 5.56 8.84 -39.29 -0.35 5.21 16 28 H 0.33 4.98 8.83 -39.29 -0.35 4.63 16 29 H 0.02 0.49 6.64 -51.93 -0.34 0.15 16 30 H 0.02 0.51 7.58 -51.93 -0.39 0.11 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 243.12 15.07 3.66 3.66 Total: -1.00 -28.17 243.12 -5.98 -34.15 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -4.63 Total: 9.65 kcal Atomic # 6 Polarization: -22.89 SS G_CDS: -1.10 Total: -24.00 kcal Atomic # 7 Polarization: -40.84 SS G_CDS: 0.78 Total: -40.06 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.69 Total: 16.60 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -28.17 -5.98 -34.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260792036.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.168 kcal (2) G-P(sol) polarization free energy of solvation -28.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds