Wall clock time and date at job start Mon Mar 30 2020 01:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52999 * 109.47190 * 2 1 4 4 C 1.52994 * 109.46799 * 240.00202 * 2 1 3 5 5 H 1.08998 * 115.55302 * 88.48273 * 4 2 1 6 6 C 1.53008 * 117.50165 * 302.80731 * 4 2 1 7 7 C 1.53007 * 117.49930 * 234.15368 * 4 2 1 8 8 N 1.46901 * 117.49667 * 214.98343 * 7 4 2 9 9 C 1.53001 * 117.49694 * 359.97438 * 7 4 2 10 10 C 1.50704 * 109.46964 * 61.40398 * 9 7 4 11 11 H 1.08007 * 119.99893 * 354.44069 * 10 9 7 12 12 C 1.37881 * 120.00157 * 174.43669 * 10 9 7 13 13 N 1.31513 * 120.00030 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 119.99656 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47193 * 90.00267 * 14 12 10 16 16 H 1.48501 * 109.46866 * 210.00179 * 14 12 10 17 17 H 1.48496 * 109.46967 * 329.99933 * 14 12 10 18 18 H 1.08999 * 109.46951 * 59.99736 * 1 2 3 19 19 H 1.08997 * 109.47044 * 179.97438 * 1 2 3 20 20 H 1.08999 * 109.47180 * 299.99738 * 1 2 3 21 21 H 1.08999 * 109.46951 * 120.00264 * 2 1 3 22 22 H 1.09001 * 109.46892 * 308.10728 * 3 2 1 23 23 H 1.09005 * 109.46451 * 68.10178 * 3 2 1 24 24 H 1.08999 * 109.46835 * 188.09804 * 3 2 1 25 25 H 1.09004 * 117.49503 * 0.02562 * 6 4 2 26 26 H 1.09000 * 117.49419 * 144.99893 * 6 4 2 27 27 H 1.00900 * 110.99787 * 185.43380 * 8 7 4 28 28 H 1.00897 * 111.00046 * 309.38213 * 8 7 4 29 29 H 1.08992 * 109.47060 * 181.40351 * 9 7 4 30 30 H 1.09000 * 109.47384 * 301.40835 * 9 7 4 31 31 H 0.96996 * 119.99401 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 1 2.1722 -0.0958 -2.1321 6 6 1.5822 -2.1647 -1.4681 7 6 3.0248 -1.8745 -1.0467 8 7 4.0758 -2.0544 -2.0572 9 6 3.4247 -2.2179 0.3897 10 6 2.2016 -2.6333 1.1660 11 1 1.2244 -2.5651 0.7111 12 6 2.3301 -3.1006 2.4568 13 7 1.2628 -3.4635 3.1341 14 14 4.0203 -3.2179 3.2436 15 1 4.3325 -1.9432 3.9384 16 1 4.0331 -4.3325 4.2249 17 1 5.0388 -3.4716 2.1932 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 1.8934 -0.5139 0.8900 22 1 1.5633 1.9964 -0.8086 23 1 1.7998 1.9127 0.9536 24 1 3.1205 1.4458 -0.1448 25 1 0.9173 -2.6003 -0.7222 26 1 1.4131 -2.4888 -2.4950 27 1 4.6119 -2.8899 -1.8765 28 1 3.6844 -2.0701 -2.9871 29 1 4.1446 -3.0363 0.3806 30 1 3.8743 -1.3437 0.8606 31 1 1.3534 -3.7925 4.0420 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260792036.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:05 Heat of formation + Delta-G solvation = -7.733265 kcal Electronic energy + Delta-G solvation = -11687.788941 eV Core-core repulsion = 9775.641825 eV Total energy + Delta-G solvation = -1912.147116 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.12115 -35.12026 -34.65668 -31.29754 -30.63219 -27.89013 -24.99375 -23.79508 -21.07012 -19.60996 -18.65133 -16.93235 -16.30969 -15.99325 -15.13878 -15.12278 -14.45839 -14.08156 -13.95084 -13.52425 -13.09809 -12.91071 -12.69445 -12.17164 -11.98033 -11.80789 -11.73852 -11.39588 -11.30703 -10.83536 -10.70669 -10.47101 -9.09240 -8.19449 -6.19275 1.36167 1.38783 1.48083 2.39715 3.02947 3.18519 3.61689 4.05566 4.18468 4.24140 4.38754 4.56833 4.65672 4.89929 4.96266 5.02703 5.08083 5.13102 5.15231 5.25321 5.34997 5.46182 5.54153 5.63634 5.67383 5.97542 6.24181 6.50727 6.69948 6.89078 7.41193 8.94036 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.034318 B = 0.016462 C = 0.013922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.712812 B = 1700.438579 C = 2010.710665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.088 4.088 3 C -0.133 4.133 4 C -0.116 4.116 5 H 0.104 0.896 6 C -0.215 4.215 7 C 0.065 3.935 8 N -0.810 5.810 9 C 0.027 3.973 10 C -0.508 4.508 11 H 0.073 0.927 12 C 0.012 3.988 13 N -0.946 5.946 14 Si 0.929 3.071 15 H -0.273 1.273 16 H -0.290 1.290 17 H -0.252 1.252 18 H 0.062 0.938 19 H 0.032 0.968 20 H 0.046 0.954 21 H 0.078 0.922 22 H 0.064 0.936 23 H 0.050 0.950 24 H 0.048 0.952 25 H 0.087 0.913 26 H 0.093 0.907 27 H 0.346 0.654 28 H 0.347 0.653 29 H 0.019 0.981 30 H 0.015 0.985 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.946 5.419 -8.102 10.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.106 4.106 3 C -0.190 4.190 4 C -0.136 4.136 5 H 0.122 0.878 6 C -0.254 4.254 7 C -0.029 4.029 8 N -0.338 5.338 9 C -0.011 4.011 10 C -0.546 4.546 11 H 0.091 0.909 12 C -0.185 4.185 13 N -0.587 5.587 14 Si 0.755 3.245 15 H -0.199 1.199 16 H -0.216 1.216 17 H -0.176 1.176 18 H 0.081 0.919 19 H 0.051 0.949 20 H 0.065 0.935 21 H 0.096 0.904 22 H 0.083 0.917 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.105 0.895 26 H 0.111 0.889 27 H 0.160 0.840 28 H 0.160 0.840 29 H 0.037 0.963 30 H 0.033 0.967 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.228 6.040 -7.693 10.300 hybrid contribution -0.109 -1.267 0.545 1.384 sum 3.120 4.773 -7.148 9.144 Atomic orbital electron populations 1.21611 0.95489 1.00403 1.00883 1.20916 0.95505 0.96130 0.98082 1.21728 1.00612 0.95178 1.01482 1.22408 1.02088 0.89961 0.99098 0.87795 1.23868 1.00779 0.99751 1.00999 1.21528 0.86073 1.02438 0.92849 1.58553 1.25288 1.45362 1.04640 1.18940 0.95903 0.95608 0.90668 1.21646 0.94626 1.40498 0.97874 0.90924 1.25748 0.99487 0.95200 0.98072 1.70026 1.30672 1.46322 1.11704 0.85972 0.81918 0.77832 0.78776 1.19884 1.21574 1.17579 0.91884 0.94875 0.93529 0.90384 0.91747 0.93056 0.93241 0.89514 0.88909 0.84039 0.83970 0.96307 0.96721 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.54 9.00 71.99 0.65 -3.89 16 2 C -0.09 -3.33 2.39 -10.79 -0.03 -3.36 16 3 C -0.13 -4.16 9.18 71.98 0.66 -3.50 16 4 C -0.12 -4.21 5.12 -10.79 -0.06 -4.26 16 5 H 0.10 3.33 8.09 -2.39 -0.02 3.31 16 6 C -0.21 -8.18 8.61 30.62 0.26 -7.92 16 7 C 0.06 2.51 3.29 3.55 0.01 2.53 16 8 N -0.81 -25.71 9.80 -151.46 -1.48 -27.20 16 9 C 0.03 1.25 3.69 29.85 0.11 1.36 16 10 C -0.51 -27.46 6.89 25.60 0.18 -27.28 16 11 H 0.07 4.19 4.43 -2.91 -0.01 4.17 16 12 C 0.01 0.66 5.47 84.66 0.46 1.13 16 13 N -0.95 -57.69 13.96 21.45 0.30 -57.39 16 14 Si 0.93 44.08 27.58 68.60 1.89 45.97 16 15 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 16 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 17 H -0.25 -11.26 6.38 99.48 0.64 -10.63 16 18 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 19 H 0.03 1.32 6.83 -2.39 -0.02 1.30 16 20 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 21 H 0.08 3.65 4.56 -2.39 -0.01 3.64 16 22 H 0.06 1.71 8.13 -2.39 -0.02 1.69 16 23 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 24 H 0.05 1.54 8.13 -2.39 -0.02 1.53 16 25 H 0.09 3.96 4.62 -2.39 -0.01 3.95 16 26 H 0.09 3.01 8.12 -2.39 -0.02 2.99 16 27 H 0.35 10.36 8.84 -89.69 -0.79 9.57 16 28 H 0.35 9.17 8.83 -89.70 -0.79 8.38 16 29 H 0.02 0.87 6.64 -2.39 -0.02 0.86 16 30 H 0.01 0.70 7.58 -2.39 -0.02 0.68 16 31 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -60.35 243.12 2.43 -57.91 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: -0.53 Total: 25.90 kcal Atomic # 6 Polarization: -47.45 SS G_CDS: 2.25 Total: -45.20 kcal Atomic # 7 Polarization: -83.40 SS G_CDS: -1.18 Total: -84.59 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.89 Total: 45.97 kcal Total: -60.35 2.43 -57.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260792036.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.181 kcal (2) G-P(sol) polarization free energy of solvation -60.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds