Wall clock time and date at job start Mon Mar 30 2020 02:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 110.54126 * 2 1 4 4 C 1.54891 * 110.48608 * 237.39286 * 2 1 3 5 5 C 1.54885 * 102.74923 * 203.37743 * 4 2 1 6 6 C 1.54272 * 104.19380 * 37.94423 * 5 4 2 7 7 C 1.50702 * 110.03304 * 95.67504 * 6 5 4 8 8 H 1.08002 * 119.99648 * 4.82631 * 7 6 5 9 9 C 1.37871 * 119.99433 * 184.82587 * 7 6 5 10 10 N 1.31505 * 120.00640 * 2.82986 * 9 7 6 11 11 Si 1.86809 * 119.99530 * 182.82681 * 9 7 6 12 12 H 1.48496 * 109.47180 * 60.00270 * 11 9 7 13 13 H 1.48500 * 109.47187 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47139 * 300.00058 * 11 9 7 15 15 C 1.53004 * 110.02724 * 217.10360 * 6 5 4 16 16 N 1.46903 * 109.47340 * 294.73783 * 15 6 5 17 17 C 1.53873 * 106.59894 * 336.38614 * 6 5 4 18 18 H 1.09003 * 109.47216 * 181.15557 * 1 2 3 19 19 H 1.08995 * 109.47252 * 301.15035 * 1 2 3 20 20 H 1.09001 * 109.47052 * 61.15686 * 1 2 3 21 21 H 1.09000 * 110.75486 * 321.69732 * 4 2 1 22 22 H 1.09001 * 110.75671 * 84.87666 * 4 2 1 23 23 H 1.09002 * 110.48750 * 156.61652 * 5 4 2 24 24 H 1.08996 * 110.48534 * 279.13147 * 5 4 2 25 25 H 0.97004 * 120.00706 * 179.97438 * 10 9 7 26 26 H 1.08997 * 109.46955 * 54.73905 * 15 6 5 27 27 H 1.08995 * 109.46631 * 174.73705 * 15 6 5 28 28 H 1.00897 * 110.99833 * 56.04509 * 16 15 6 29 29 H 1.00895 * 110.99545 * 180.02562 * 16 15 6 30 30 H 1.08991 * 110.03494 * 240.71878 * 17 6 5 31 31 H 1.08997 * 110.03161 * 119.28436 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9125 1.0207 0.0000 4 6 2.0721 -0.7819 -1.2223 5 6 3.4907 -1.1978 -0.7602 6 6 3.3165 -1.5406 0.7339 7 6 3.1128 -3.0242 0.9029 8 1 3.1837 -3.6798 0.0475 9 6 2.8361 -3.5444 2.1493 10 7 2.6947 -2.7408 3.1807 11 14 2.6618 -5.3908 2.3731 12 1 3.9279 -6.0589 1.9786 13 1 2.3659 -5.6911 3.7970 14 1 1.5524 -5.8901 1.5215 15 6 4.5466 -1.0866 1.5225 16 7 5.7178 -1.8619 1.0921 17 6 2.0699 -0.7789 1.2172 18 1 -0.3634 -1.0275 0.0207 19 1 -0.3633 0.5316 0.8794 20 1 -0.3633 0.4958 -0.9002 21 1 1.4580 -1.6599 -1.4224 22 1 2.1220 -0.1389 -2.1010 23 1 3.8315 -2.0721 -1.3148 24 1 4.1902 -0.3713 -0.8850 25 1 2.4996 -3.1068 4.0576 26 1 4.7249 -0.0271 1.3393 27 1 4.3754 -1.2476 2.5868 28 1 5.8591 -1.7807 0.0963 29 1 6.5436 -1.5808 1.5990 30 1 2.3412 -0.0860 2.0135 31 1 1.3176 -1.4823 1.5739 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260926200.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:40 Heat of formation + Delta-G solvation = -39.801324 kcal Electronic energy + Delta-G solvation = -11905.010245 eV Core-core repulsion = 9991.472553 eV Total energy + Delta-G solvation = -1913.537692 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.67871 -35.37420 -33.88838 -31.40912 -29.45349 -26.99753 -25.54834 -23.79374 -20.69321 -20.12828 -17.84284 -16.56275 -16.41111 -16.03269 -15.31444 -14.51703 -14.28359 -13.82099 -13.63908 -13.46487 -13.00772 -12.74252 -12.68717 -12.20852 -12.08325 -11.45192 -11.27928 -11.17435 -11.04759 -10.73441 -10.62725 -10.18971 -9.07857 -7.88505 -5.92405 1.44669 1.47041 1.52276 2.56178 3.41169 4.00720 4.16138 4.19106 4.31268 4.65457 4.77260 4.84893 4.87480 4.97465 5.00513 5.15325 5.25607 5.33278 5.37809 5.46410 5.49069 5.68487 5.76860 5.86204 6.05389 6.25049 6.56204 6.79863 7.01135 7.11765 7.69903 9.15859 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.035851 B = 0.017796 C = 0.014617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.821633 B = 1573.050197 C = 1915.103432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.102 4.102 3 H 0.068 0.932 4 C -0.105 4.105 5 C -0.109 4.109 6 C 0.060 3.940 7 C -0.473 4.473 8 H 0.037 0.963 9 C 0.023 3.977 10 N -0.913 5.913 11 Si 0.932 3.068 12 H -0.281 1.281 13 H -0.292 1.292 14 H -0.278 1.278 15 C 0.089 3.911 16 N -0.837 5.837 17 C -0.074 4.074 18 H 0.040 0.960 19 H 0.049 0.951 20 H 0.068 0.932 21 H 0.052 0.948 22 H 0.074 0.926 23 H 0.047 0.953 24 H 0.051 0.949 25 H 0.250 0.750 26 H -0.010 1.010 27 H 0.052 0.948 28 H 0.333 0.667 29 H 0.329 0.671 30 H 0.017 0.983 31 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.282 5.071 -6.092 7.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.120 4.120 3 H 0.087 0.913 4 C -0.142 4.142 5 C -0.147 4.147 6 C 0.059 3.941 7 C -0.512 4.512 8 H 0.055 0.945 9 C -0.174 4.174 10 N -0.553 5.553 11 Si 0.761 3.239 12 H -0.207 1.207 13 H -0.219 1.219 14 H -0.204 1.204 15 C -0.041 4.041 16 N -0.366 5.366 17 C -0.113 4.113 18 H 0.059 0.941 19 H 0.068 0.932 20 H 0.087 0.913 21 H 0.070 0.930 22 H 0.092 0.908 23 H 0.066 0.934 24 H 0.069 0.931 25 H 0.059 0.941 26 H 0.008 0.992 27 H 0.070 0.930 28 H 0.145 0.855 29 H 0.140 0.860 30 H 0.036 0.964 31 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -0.732 4.415 -5.622 7.186 hybrid contribution 0.389 -0.288 0.414 0.637 sum -0.342 4.127 -5.208 6.654 Atomic orbital electron populations 1.21705 0.94856 1.00969 1.01476 1.22063 0.95782 0.98378 0.95778 0.91330 1.22392 0.96067 0.98918 0.96839 1.22392 0.96487 0.98677 0.97135 1.18842 0.90718 0.93956 0.90548 1.21083 1.44886 0.92530 0.92679 0.94472 1.25346 0.95996 0.99747 0.96314 1.70027 1.51022 1.34674 0.99610 0.86031 0.77947 0.83663 0.76283 1.20726 1.21854 1.20378 1.21731 0.91720 0.89999 1.00698 1.58470 1.05807 1.63191 1.09155 1.21940 0.98411 0.96170 0.94764 0.94111 0.93224 0.91267 0.92957 0.90759 0.93415 0.93061 0.94082 0.99236 0.92994 0.85474 0.86006 0.96413 0.94370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.26 9.12 71.98 0.66 -3.61 16 2 C -0.10 -3.72 3.46 -9.72 -0.03 -3.75 16 3 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 4 C -0.10 -3.69 6.33 31.88 0.20 -3.49 16 5 C -0.11 -4.32 4.98 31.67 0.16 -4.16 16 6 C 0.06 2.84 0.43 -52.20 -0.02 2.82 16 7 C -0.47 -25.59 7.38 25.60 0.19 -25.40 16 8 H 0.04 2.05 7.50 -2.91 -0.02 2.03 16 9 C 0.02 1.30 4.92 84.65 0.42 1.72 16 10 N -0.91 -52.46 10.38 21.44 0.22 -52.24 16 11 Si 0.93 45.37 29.54 68.60 2.03 47.40 16 12 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 13 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 14 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 15 C 0.09 4.17 5.18 86.30 0.45 4.61 16 16 N -0.84 -34.93 9.11 -186.71 -1.70 -36.63 16 17 C -0.07 -3.46 4.65 31.32 0.15 -3.31 16 18 H 0.04 1.40 8.11 -2.39 -0.02 1.39 16 19 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 20 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 21 H 0.05 1.95 8.06 -2.39 -0.02 1.93 16 22 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 23 H 0.05 1.92 7.63 -2.39 -0.02 1.91 16 24 H 0.05 1.83 7.81 -2.39 -0.02 1.81 16 25 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 26 H -0.01 -0.44 8.07 -2.39 -0.02 -0.46 16 27 H 0.05 2.80 6.60 -2.39 -0.02 2.79 16 28 H 0.33 12.51 8.12 -89.70 -0.73 11.78 16 29 H 0.33 11.87 9.08 -89.70 -0.81 11.06 16 30 H 0.02 0.84 7.67 -2.39 -0.02 0.82 16 31 H 0.04 2.01 6.52 -2.39 -0.02 2.00 16 Total: -1.00 -59.14 242.84 2.27 -56.87 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: -0.44 Total: 19.17 kcal Atomic # 6 Polarization: -36.73 SS G_CDS: 2.16 Total: -34.57 kcal Atomic # 7 Polarization: -87.39 SS G_CDS: -1.48 Total: -88.87 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -59.14 2.27 -56.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260926200.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.070 kcal (2) G-P(sol) polarization free energy of solvation -59.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds