Wall clock time and date at job start Mon Mar 30 2020 02:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 110.81631 * 2 1 4 4 C 1.55026 * 110.87363 * 123.34529 * 2 1 3 5 5 C 1.54273 * 104.28018 * 156.10045 * 4 2 1 6 6 C 1.53869 * 106.59455 * 336.48013 * 5 4 2 7 7 C 1.50706 * 110.07181 * 119.30770 * 6 5 4 8 8 H 1.07995 * 119.99936 * 5.17837 * 7 6 5 9 9 C 1.37879 * 119.99921 * 185.17179 * 7 6 5 10 10 N 1.31516 * 119.99933 * 353.64696 * 9 7 6 11 11 Si 1.86800 * 119.99610 * 173.65212 * 9 7 6 12 12 H 1.48496 * 109.47254 * 60.00272 * 11 9 7 13 13 H 1.48505 * 109.47005 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47339 * 299.99876 * 11 9 7 15 15 C 1.53004 * 110.03205 * 240.71358 * 6 5 4 16 16 N 1.46891 * 109.47098 * 291.95001 * 15 6 5 17 17 C 1.54266 * 106.60049 * 0.02562 * 6 5 4 18 18 H 1.08995 * 109.47610 * 183.33746 * 1 2 3 19 19 H 1.09008 * 109.47028 * 303.33884 * 1 2 3 20 20 H 1.08999 * 109.46932 * 63.33676 * 1 2 3 21 21 H 1.08998 * 110.36942 * 37.43170 * 4 2 1 22 22 H 1.09004 * 110.63864 * 274.89753 * 4 2 1 23 23 H 1.09001 * 110.03039 * 217.19550 * 5 4 2 24 24 H 1.08996 * 110.07323 * 95.78642 * 5 4 2 25 25 H 0.97001 * 119.99292 * 180.02562 * 10 9 7 26 26 H 1.08998 * 109.46911 * 51.95693 * 15 6 5 27 27 H 1.09008 * 109.47003 * 171.95060 * 15 6 5 28 28 H 1.00906 * 111.00247 * 61.50645 * 16 15 6 29 29 H 1.00903 * 110.99969 * 185.45019 * 16 15 6 30 30 H 1.09006 * 110.48344 * 142.29234 * 17 6 5 31 31 H 1.09003 * 110.48693 * 264.79622 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9174 1.0188 0.0000 4 6 2.0824 -0.7962 1.2101 5 6 3.4951 -1.2299 0.7673 6 6 3.4928 -1.2298 -0.7714 7 6 4.5166 -0.2530 -1.2901 8 1 5.1743 0.2564 -0.6014 9 6 4.6135 -0.0098 -2.6438 10 7 3.9016 -0.7192 -3.4920 11 14 5.7563 1.3273 -3.2729 12 1 7.1501 1.0206 -2.8628 13 1 5.6788 1.3878 -4.7547 14 1 5.3488 2.6360 -2.7016 15 6 3.7964 -2.6346 -1.2961 16 7 5.1873 -2.9855 -0.9796 17 6 2.0791 -0.7954 -1.2100 18 1 -0.3634 -1.0258 0.0598 19 1 -0.3633 0.5648 0.8586 20 1 -0.3633 0.4612 -0.9184 21 1 1.4594 -1.6688 1.4063 22 1 2.1379 -0.1616 2.0945 23 1 3.7125 -2.2308 1.1403 24 1 4.2372 -0.5237 1.1396 25 1 3.9701 -0.5483 -4.4443 26 1 3.1244 -3.3516 -0.8246 27 1 3.6526 -2.6579 -2.3764 28 1 5.3399 -2.9949 0.0178 29 1 5.4396 -3.8711 -1.3922 30 1 2.1324 -0.1587 -2.0932 31 1 1.4558 -1.6677 -1.4069 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260926202.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:43 Heat of formation + Delta-G solvation = -19.689856 kcal Electronic energy + Delta-G solvation = -11889.312944 eV Core-core repulsion = 9976.647351 eV Total energy + Delta-G solvation = -1912.665593 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -37.91512 -33.61948 -31.85305 -29.80241 -27.70330 -25.00798 -23.89338 -22.06309 -19.01982 -18.15437 -15.90041 -14.89842 -14.59516 -14.10513 -13.31351 -13.00840 -12.72495 -12.21471 -11.94797 -11.73300 -11.26102 -10.77614 -10.76923 -10.34975 -10.23780 -9.85489 -9.60274 -9.43090 -9.30543 -8.92711 -8.62010 -8.11886 -7.26823 -5.76424 -3.76325 3.45251 3.48571 3.52624 4.62417 5.49975 5.59160 5.64432 5.80551 5.96799 6.09039 6.25096 6.37196 6.46988 6.64079 6.69830 6.73070 6.80435 6.87374 7.05080 7.12176 7.29522 7.42178 7.56852 7.87254 7.94925 8.24253 8.45447 8.64409 8.78013 9.17181 9.83880 11.29126 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.036732 B = 0.017383 C = 0.014359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.098804 B = 1610.425402 C = 1949.512500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.099 4.099 3 H 0.069 0.931 4 C -0.116 4.116 5 C -0.112 4.112 6 C 0.073 3.927 7 C -0.465 4.465 8 H 0.048 0.952 9 C 0.066 3.934 10 N -0.892 5.892 11 Si 0.884 3.116 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.282 1.282 15 C 0.081 3.919 16 N -0.824 5.824 17 C -0.090 4.090 18 H 0.046 0.954 19 H 0.040 0.960 20 H 0.048 0.952 21 H 0.047 0.953 22 H 0.044 0.956 23 H 0.033 0.967 24 H 0.053 0.947 25 H 0.254 0.746 26 H -0.028 1.028 27 H 0.094 0.906 28 H 0.317 0.683 29 H 0.313 0.687 30 H 0.079 0.921 31 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.550 -1.333 5.291 6.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.117 4.117 3 H 0.087 0.913 4 C -0.154 4.154 5 C -0.150 4.150 6 C 0.073 3.927 7 C -0.503 4.503 8 H 0.067 0.933 9 C -0.133 4.133 10 N -0.532 5.532 11 Si 0.713 3.287 12 H -0.206 1.206 13 H -0.218 1.218 14 H -0.208 1.208 15 C -0.049 4.049 16 N -0.350 5.350 17 C -0.128 4.128 18 H 0.065 0.935 19 H 0.059 0.941 20 H 0.067 0.933 21 H 0.066 0.934 22 H 0.063 0.937 23 H 0.052 0.948 24 H 0.072 0.928 25 H 0.064 0.936 26 H -0.010 1.010 27 H 0.112 0.888 28 H 0.128 0.872 29 H 0.123 0.877 30 H 0.098 0.902 31 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -3.390 -0.677 4.681 5.819 hybrid contribution 0.256 -0.167 0.086 0.318 sum -3.133 -0.844 4.767 5.766 Atomic orbital electron populations 1.21751 0.96942 1.00579 1.00301 1.22106 0.93143 0.99704 0.96757 0.91297 1.22401 0.97537 0.98416 0.97018 1.22327 0.95064 0.98264 0.99350 1.18719 0.93144 0.92549 0.88323 1.20856 1.16364 1.21640 0.91468 0.93332 1.24781 0.95575 0.95997 0.96963 1.69864 1.42025 1.39539 1.01815 0.86806 0.81811 0.82766 0.77338 1.20591 1.21778 1.20832 1.21987 0.85027 0.95310 1.02609 1.58563 1.26070 1.35377 1.15003 1.22315 0.95957 0.97674 0.96888 0.93513 0.94066 0.93257 0.93380 0.93709 0.94837 0.92789 0.93578 1.00974 0.88806 0.87191 0.87715 0.90200 0.95369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.29 37.16 0.35 -1.95 16 2 C -0.10 -1.96 3.50 -88.57 -0.31 -2.27 16 3 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 4 C -0.12 -2.17 6.29 -24.99 -0.16 -2.33 16 5 C -0.11 -2.37 5.69 -25.61 -0.15 -2.51 16 6 C 0.07 1.76 0.43 -154.54 -0.07 1.69 16 7 C -0.46 -12.57 7.43 -34.44 -0.26 -12.83 16 8 H 0.05 1.35 7.35 -52.49 -0.39 0.96 16 9 C 0.07 1.83 4.85 -17.82 -0.09 1.74 16 10 N -0.89 -25.04 10.06 55.43 0.56 -24.48 16 11 Si 0.88 21.87 29.54 -169.99 -5.02 16.85 16 12 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 14 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 15 C 0.08 1.92 5.13 -3.83 -0.02 1.90 16 16 N -0.82 -17.92 8.99 -10.37 -0.09 -18.01 16 17 C -0.09 -2.09 4.88 -25.09 -0.12 -2.21 16 18 H 0.05 0.74 8.10 -51.93 -0.42 0.32 16 19 H 0.04 0.60 8.14 -51.92 -0.42 0.18 16 20 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 21 H 0.05 0.85 8.01 -51.93 -0.42 0.43 16 22 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.03 0.66 6.96 -51.93 -0.36 0.30 16 24 H 0.05 1.17 7.38 -51.93 -0.38 0.79 16 25 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 26 H -0.03 -0.62 8.13 -51.93 -0.42 -1.04 16 27 H 0.09 2.50 6.39 -51.92 -0.33 2.17 16 28 H 0.32 6.31 7.89 -39.29 -0.31 6.00 16 29 H 0.31 6.02 9.08 -39.29 -0.36 5.66 16 30 H 0.08 2.09 6.30 -51.93 -0.33 1.76 16 31 H 0.03 0.64 7.76 -51.93 -0.40 0.23 16 LS Contribution 241.62 15.07 3.64 3.64 Total: -1.00 -27.89 241.62 -6.68 -34.57 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -4.94 Total: 6.19 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: -0.82 Total: -18.76 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: 0.46 Total: -42.49 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -27.89 -6.68 -34.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260926202.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.882 kcal (2) G-P(sol) polarization free energy of solvation -27.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds