Wall clock time and date at job start Mon Mar 30 2020 02:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 110.81631 * 2 1 4 4 C 1.55026 * 110.87363 * 123.34529 * 2 1 3 5 5 C 1.54273 * 104.28018 * 156.10045 * 4 2 1 6 6 C 1.53869 * 106.59455 * 336.48013 * 5 4 2 7 7 C 1.50706 * 110.07181 * 119.30770 * 6 5 4 8 8 H 1.07995 * 119.99936 * 5.17837 * 7 6 5 9 9 C 1.37879 * 119.99921 * 185.17179 * 7 6 5 10 10 N 1.31516 * 119.99933 * 353.64696 * 9 7 6 11 11 Si 1.86800 * 119.99610 * 173.65212 * 9 7 6 12 12 H 1.48496 * 109.47254 * 60.00272 * 11 9 7 13 13 H 1.48505 * 109.47005 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47339 * 299.99876 * 11 9 7 15 15 C 1.53004 * 110.03205 * 240.71358 * 6 5 4 16 16 N 1.46891 * 109.47098 * 291.95001 * 15 6 5 17 17 C 1.54266 * 106.60049 * 0.02562 * 6 5 4 18 18 H 1.08995 * 109.47610 * 183.33746 * 1 2 3 19 19 H 1.09008 * 109.47028 * 303.33884 * 1 2 3 20 20 H 1.08999 * 109.46932 * 63.33676 * 1 2 3 21 21 H 1.08998 * 110.36942 * 37.43170 * 4 2 1 22 22 H 1.09004 * 110.63864 * 274.89753 * 4 2 1 23 23 H 1.09001 * 110.03039 * 217.19550 * 5 4 2 24 24 H 1.08996 * 110.07323 * 95.78642 * 5 4 2 25 25 H 0.97001 * 119.99292 * 180.02562 * 10 9 7 26 26 H 1.08998 * 109.46911 * 51.95693 * 15 6 5 27 27 H 1.09008 * 109.47003 * 171.95060 * 15 6 5 28 28 H 1.00906 * 111.00247 * 61.50645 * 16 15 6 29 29 H 1.00903 * 110.99969 * 185.45019 * 16 15 6 30 30 H 1.09006 * 110.48344 * 142.29234 * 17 6 5 31 31 H 1.09003 * 110.48693 * 264.79622 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9174 1.0188 0.0000 4 6 2.0824 -0.7962 1.2101 5 6 3.4951 -1.2299 0.7673 6 6 3.4928 -1.2298 -0.7714 7 6 4.5166 -0.2530 -1.2901 8 1 5.1743 0.2564 -0.6014 9 6 4.6135 -0.0098 -2.6438 10 7 3.9016 -0.7192 -3.4920 11 14 5.7563 1.3273 -3.2729 12 1 7.1501 1.0206 -2.8628 13 1 5.6788 1.3878 -4.7547 14 1 5.3488 2.6360 -2.7016 15 6 3.7964 -2.6346 -1.2961 16 7 5.1873 -2.9855 -0.9796 17 6 2.0791 -0.7954 -1.2100 18 1 -0.3634 -1.0258 0.0598 19 1 -0.3633 0.5648 0.8586 20 1 -0.3633 0.4612 -0.9184 21 1 1.4594 -1.6688 1.4063 22 1 2.1379 -0.1616 2.0945 23 1 3.7125 -2.2308 1.1403 24 1 4.2372 -0.5237 1.1396 25 1 3.9701 -0.5483 -4.4443 26 1 3.1244 -3.3516 -0.8246 27 1 3.6526 -2.6579 -2.3764 28 1 5.3399 -2.9949 0.0178 29 1 5.4396 -3.8711 -1.3922 30 1 2.1324 -0.1587 -2.0932 31 1 1.4558 -1.6677 -1.4069 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260926202.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:43 Heat of formation + Delta-G solvation = -37.386542 kcal Electronic energy + Delta-G solvation = -11890.080330 eV Core-core repulsion = 9976.647351 eV Total energy + Delta-G solvation = -1913.432979 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.65178 -35.35820 -33.86682 -31.41566 -29.45750 -26.89145 -25.66771 -23.78544 -20.69542 -19.96837 -17.85416 -16.79589 -16.41798 -15.86826 -15.11632 -14.66674 -14.27743 -13.88828 -13.59190 -13.57511 -12.95435 -12.69342 -12.59699 -12.24318 -12.06048 -11.46188 -11.26946 -11.10417 -11.08632 -10.76486 -10.58541 -10.17748 -9.02870 -7.85756 -5.90228 1.45543 1.46818 1.52117 2.56849 3.41439 4.01401 4.10218 4.21773 4.37070 4.68137 4.73687 4.84827 4.92353 4.98246 5.04025 5.13629 5.23005 5.30530 5.36158 5.45347 5.55247 5.67803 5.81733 5.87427 6.02273 6.28226 6.57351 6.82877 7.04222 7.12648 7.71436 9.16761 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.036732 B = 0.017383 C = 0.014359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.098804 B = 1610.425402 C = 1949.512500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.097 4.097 3 H 0.053 0.947 4 C -0.108 4.108 5 C -0.110 4.110 6 C 0.060 3.940 7 C -0.472 4.472 8 H 0.035 0.965 9 C 0.025 3.975 10 N -0.909 5.909 11 Si 0.930 3.070 12 H -0.282 1.282 13 H -0.292 1.292 14 H -0.278 1.278 15 C 0.089 3.911 16 N -0.835 5.835 17 C -0.087 4.087 18 H 0.055 0.945 19 H 0.066 0.934 20 H 0.046 0.954 21 H 0.065 0.935 22 H 0.066 0.934 23 H 0.047 0.953 24 H 0.042 0.958 25 H 0.250 0.750 26 H -0.014 1.014 27 H 0.060 0.940 28 H 0.329 0.671 29 H 0.327 0.673 30 H 0.042 0.958 31 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.084 -1.394 6.698 7.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.116 4.116 3 H 0.072 0.928 4 C -0.145 4.145 5 C -0.147 4.147 6 C 0.060 3.940 7 C -0.510 4.510 8 H 0.053 0.947 9 C -0.172 4.172 10 N -0.549 5.549 11 Si 0.759 3.241 12 H -0.208 1.208 13 H -0.218 1.218 14 H -0.204 1.204 15 C -0.042 4.042 16 N -0.363 5.363 17 C -0.126 4.126 18 H 0.074 0.926 19 H 0.085 0.915 20 H 0.065 0.935 21 H 0.084 0.916 22 H 0.085 0.915 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.004 0.996 27 H 0.078 0.922 28 H 0.142 0.858 29 H 0.138 0.862 30 H 0.061 0.939 31 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -3.919 -0.740 6.099 7.287 hybrid contribution 0.456 -0.168 -0.357 0.603 sum -3.463 -0.908 5.742 6.767 Atomic orbital electron populations 1.21686 0.94222 1.01650 1.01380 1.22062 0.95466 0.98396 0.95629 0.92829 1.22359 0.95882 0.99227 0.97049 1.22236 0.96585 0.98917 0.96998 1.18832 0.92686 0.91979 0.90517 1.21083 1.16593 1.22040 0.91305 0.94660 1.25324 0.96907 0.97587 0.97416 1.69997 1.43005 1.40412 1.01531 0.86062 0.80191 0.81107 0.76753 1.20829 1.21778 1.20400 1.21752 0.86292 0.95612 1.00542 1.58446 1.25086 1.36612 1.16157 1.22182 0.96007 0.97366 0.97030 0.92609 0.91539 0.93527 0.91611 0.91499 0.93459 0.93874 0.94099 0.99612 0.92182 0.85814 0.86151 0.93878 0.95493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.01 9.29 71.98 0.67 -3.34 16 2 C -0.10 -3.67 3.50 -9.46 -0.03 -3.70 16 3 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 4 C -0.11 -3.69 6.29 31.72 0.20 -3.49 16 5 C -0.11 -4.40 5.69 31.32 0.18 -4.22 16 6 C 0.06 2.87 0.43 -52.20 -0.02 2.85 16 7 C -0.47 -25.57 7.43 25.60 0.19 -25.38 16 8 H 0.04 1.96 7.35 -2.91 -0.02 1.94 16 9 C 0.03 1.39 4.85 84.66 0.41 1.80 16 10 N -0.91 -51.85 10.06 21.45 0.22 -51.64 16 11 Si 0.93 45.17 29.54 68.60 2.03 47.19 16 12 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 13 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 14 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 15 C 0.09 4.16 5.13 86.31 0.44 4.60 16 16 N -0.83 -35.42 8.99 -186.72 -1.68 -37.10 16 17 C -0.09 -4.03 4.88 31.66 0.15 -3.88 16 18 H 0.05 1.59 8.10 -2.39 -0.02 1.57 16 19 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 20 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 21 H 0.07 2.04 8.01 -2.39 -0.02 2.02 16 22 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 23 H 0.05 1.74 6.96 -2.39 -0.02 1.72 16 24 H 0.04 1.80 7.38 -2.39 -0.02 1.78 16 25 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 26 H -0.01 -0.61 8.13 -2.39 -0.02 -0.63 16 27 H 0.06 3.23 6.39 -2.38 -0.02 3.22 16 28 H 0.33 12.56 7.89 -89.69 -0.71 11.86 16 29 H 0.33 12.20 9.08 -89.69 -0.81 11.39 16 30 H 0.04 2.29 6.30 -2.38 -0.02 2.27 16 31 H 0.03 1.21 7.76 -2.39 -0.02 1.19 16 Total: -1.00 -58.73 241.62 2.34 -56.39 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -0.41 Total: 19.90 kcal Atomic # 6 Polarization: -36.94 SS G_CDS: 2.19 Total: -34.76 kcal Atomic # 7 Polarization: -87.27 SS G_CDS: -1.46 Total: -88.74 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -58.73 2.34 -56.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260926202.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.008 kcal (2) G-P(sol) polarization free energy of solvation -58.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds