Wall clock time and date at job start Mon Mar 30 2020 02:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47207 * 2 1 4 4 H 1.08998 * 109.57178 * 54.84402 * 3 2 1 5 5 C 1.53124 * 109.55642 * 294.70005 * 3 2 1 6 6 C 1.53035 * 109.31045 * 182.47894 * 5 3 2 7 7 N 1.46851 * 109.52127 * 59.15841 * 6 5 3 8 8 C 1.46841 * 111.19896 * 298.26056 * 7 6 5 9 9 C 1.53040 * 109.52711 * 61.73985 * 8 7 6 10 10 H 1.08997 * 109.49809 * 60.80019 * 9 8 7 11 11 C 1.50702 * 109.50139 * 180.88078 * 9 8 7 12 12 H 1.07995 * 119.99616 * 95.13157 * 11 9 8 13 13 C 1.37879 * 119.99617 * 275.12865 * 11 9 8 14 14 N 1.31508 * 120.00411 * 355.19402 * 13 11 9 15 15 Si 1.86800 * 119.99565 * 175.19646 * 13 11 9 16 16 H 1.48506 * 109.47100 * 89.99811 * 15 13 11 17 17 H 1.48501 * 109.47230 * 330.00248 * 15 13 11 18 18 H 1.48493 * 109.47208 * 209.99827 * 15 13 11 19 19 H 1.09003 * 109.47199 * 300.00227 * 1 2 3 20 20 H 1.09000 * 109.47101 * 59.99887 * 1 2 3 21 21 H 1.08999 * 109.47523 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47199 * 239.99772 * 2 1 3 23 23 H 1.09000 * 109.47101 * 120.00113 * 2 1 3 24 24 H 1.09003 * 109.50101 * 62.51822 * 5 3 2 25 25 H 1.09001 * 109.50055 * 302.44663 * 5 3 2 26 26 H 1.08996 * 109.46261 * 299.14560 * 6 5 3 27 27 H 1.09000 * 109.46153 * 179.17108 * 6 5 3 28 28 H 1.00899 * 110.99842 * 62.35535 * 7 6 5 29 29 H 1.09002 * 109.46178 * 301.71804 * 8 7 6 30 30 H 1.09002 * 109.45177 * 181.75074 * 8 7 6 31 31 H 0.97003 * 120.00266 * 5.22663 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6042 1.9839 0.8397 5 6 1.6424 2.1267 -1.3109 6 6 2.2080 3.5486 -1.3314 7 7 3.6705 3.4967 -1.2094 8 6 4.0759 2.8872 0.0636 9 6 3.5659 1.4456 0.1258 10 1 3.9997 0.8706 -0.6923 11 6 3.9637 0.8277 1.4415 12 1 3.2725 0.8329 2.2713 13 6 5.2099 0.2556 1.5857 14 7 6.0154 0.1644 0.5502 15 14 5.7540 -0.3899 3.2520 16 1 5.3583 -1.8152 3.3840 17 1 5.1066 0.4051 4.3263 18 1 7.2296 -0.2729 3.3704 19 1 -0.3634 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 0.5556 2.1663 -1.3857 25 1 2.0447 1.5627 -2.1524 26 1 1.7940 4.1162 -0.4981 27 1 1.9388 4.0330 -2.2701 28 1 4.0815 3.0086 -1.9910 29 1 3.6532 3.4580 0.8904 30 1 5.1633 2.8913 0.1380 31 1 5.7647 0.5666 -0.2963 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260983117.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:25 Heat of formation + Delta-G solvation = -33.015728 kcal Electronic energy + Delta-G solvation = -11770.535720 eV Core-core repulsion = 9857.292274 eV Total energy + Delta-G solvation = -1913.243446 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.40483 -33.75536 -33.13691 -29.50015 -28.90768 -24.41855 -23.63145 -21.53929 -20.48097 -19.28933 -16.76297 -15.12708 -14.35498 -13.93087 -13.72574 -13.34407 -13.17923 -12.99712 -12.18444 -11.49138 -11.35488 -11.23976 -10.82829 -10.76658 -10.45632 -10.34219 -10.11931 -9.97625 -9.76786 -9.16449 -8.65661 -8.26551 -7.50432 -6.33015 -4.02163 3.43108 3.47089 3.62427 4.53337 5.09647 5.37187 5.39542 5.56150 5.71807 5.74402 5.86231 6.01006 6.17336 6.25273 6.31061 6.43460 6.46002 6.61699 6.63820 6.84343 6.96430 7.04184 7.16135 7.34808 7.54773 7.75738 8.07603 8.31401 8.46326 8.91039 9.67775 11.05312 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.038929 B = 0.015413 C = 0.012060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.080859 B = 1816.178762 C = 2321.080794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.108 4.108 3 C -0.070 4.070 4 H 0.053 0.947 5 C -0.153 4.153 6 C 0.061 3.939 7 N -0.698 5.698 8 C 0.062 3.938 9 C 0.004 3.996 10 H 0.029 0.971 11 C -0.585 4.585 12 H 0.048 0.952 13 C 0.020 3.980 14 N -0.914 5.914 15 Si 1.066 2.934 16 H -0.289 1.289 17 H -0.289 1.289 18 H -0.285 1.285 19 H 0.047 0.953 20 H 0.046 0.954 21 H 0.043 0.957 22 H 0.046 0.954 23 H 0.074 0.926 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.331 0.669 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.459 2.217 -2.020 8.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.145 4.145 3 C -0.089 4.089 4 H 0.071 0.929 5 C -0.193 4.193 6 C -0.069 4.069 7 N -0.325 5.325 8 C -0.067 4.067 9 C -0.016 4.016 10 H 0.047 0.953 11 C -0.624 4.624 12 H 0.066 0.934 13 C -0.184 4.184 14 N -0.551 5.551 15 Si 0.895 3.105 16 H -0.216 1.216 17 H -0.215 1.215 18 H -0.211 1.211 19 H 0.066 0.934 20 H 0.065 0.935 21 H 0.062 0.938 22 H 0.065 0.935 23 H 0.093 0.907 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.147 0.853 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.166 2.094 -0.996 6.587 hybrid contribution -1.511 -0.196 -0.923 1.781 sum -7.676 1.898 -1.919 8.137 Atomic orbital electron populations 1.21851 0.97801 1.00281 1.00809 1.21434 0.93211 0.97574 1.02308 1.21132 0.98518 0.94530 0.94728 0.92880 1.22420 0.99880 0.97769 0.99195 1.21902 0.89115 0.95288 1.00593 1.60836 1.07688 1.58023 1.05991 1.22339 0.99970 0.95438 0.88906 1.19534 0.90462 0.93276 0.98323 0.95313 1.21853 1.01970 1.41196 0.97345 0.93411 1.25760 0.93550 0.95209 1.03913 1.70770 1.39766 1.42421 1.02095 0.83581 0.76157 0.76151 0.74586 1.21612 1.21498 1.21084 0.93411 0.93524 0.93804 0.93493 0.90707 0.92884 0.92972 0.91869 0.92316 0.85348 0.92672 0.91791 0.91959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.67 37.16 0.36 -2.03 16 2 C -0.11 -2.12 5.28 -26.73 -0.14 -2.26 16 3 C -0.07 -1.45 1.74 -90.50 -0.16 -1.61 16 4 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 5 C -0.15 -2.69 5.06 -26.65 -0.13 -2.83 16 6 C 0.06 1.05 6.56 -3.83 -0.03 1.03 16 7 N -0.70 -13.59 6.87 -113.82 -0.78 -14.37 16 8 C 0.06 1.42 5.82 -3.84 -0.02 1.40 16 9 C 0.00 0.10 1.48 -91.69 -0.14 -0.03 16 10 H 0.03 0.76 6.68 -51.93 -0.35 0.42 16 11 C -0.58 -15.85 7.10 -34.44 -0.24 -16.10 16 12 H 0.05 1.31 7.81 -52.49 -0.41 0.90 16 13 C 0.02 0.55 5.45 -17.82 -0.10 0.45 16 14 N -0.91 -27.12 13.63 55.43 0.76 -26.37 16 15 Si 1.07 25.08 29.91 -169.99 -5.08 20.00 16 16 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 20 H 0.05 0.68 6.64 -51.93 -0.34 0.34 16 21 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 23 H 0.07 1.64 7.14 -51.93 -0.37 1.27 16 24 H 0.05 0.83 6.71 -51.93 -0.35 0.48 16 25 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.33 6.23 8.86 -39.29 -0.35 5.88 16 29 H 0.05 1.28 8.14 -51.93 -0.42 0.85 16 30 H 0.06 1.59 8.14 -51.93 -0.42 1.17 16 31 H 0.27 7.94 6.66 -40.82 -0.27 7.67 16 LS Contribution 243.66 15.07 3.67 3.67 Total: -1.00 -28.25 243.66 -7.08 -35.32 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -5.04 Total: 3.73 kcal Atomic # 6 Polarization: -21.38 SS G_CDS: -0.60 Total: -21.98 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: -0.03 Total: -40.74 kcal Atomic # 14 Polarization: 25.08 SS G_CDS: -5.08 Total: 20.00 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -28.25 -7.08 -35.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260983117.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.308 kcal (2) G-P(sol) polarization free energy of solvation -28.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds