Wall clock time and date at job start Mon Mar 30 2020 02:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47207 * 2 1 4 4 H 1.08998 * 109.57178 * 54.84402 * 3 2 1 5 5 C 1.53124 * 109.55642 * 294.70005 * 3 2 1 6 6 C 1.53035 * 109.31045 * 182.47894 * 5 3 2 7 7 N 1.46851 * 109.52127 * 59.15841 * 6 5 3 8 8 C 1.46841 * 111.19896 * 298.26056 * 7 6 5 9 9 C 1.53040 * 109.52711 * 61.73985 * 8 7 6 10 10 H 1.08997 * 109.49809 * 60.80019 * 9 8 7 11 11 C 1.50702 * 109.50139 * 180.88078 * 9 8 7 12 12 H 1.07995 * 119.99616 * 95.13157 * 11 9 8 13 13 C 1.37879 * 119.99617 * 275.12865 * 11 9 8 14 14 N 1.31508 * 120.00411 * 355.19402 * 13 11 9 15 15 Si 1.86800 * 119.99565 * 175.19646 * 13 11 9 16 16 H 1.48506 * 109.47100 * 89.99811 * 15 13 11 17 17 H 1.48501 * 109.47230 * 330.00248 * 15 13 11 18 18 H 1.48493 * 109.47208 * 209.99827 * 15 13 11 19 19 H 1.09003 * 109.47199 * 300.00227 * 1 2 3 20 20 H 1.09000 * 109.47101 * 59.99887 * 1 2 3 21 21 H 1.08999 * 109.47523 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47199 * 239.99772 * 2 1 3 23 23 H 1.09000 * 109.47101 * 120.00113 * 2 1 3 24 24 H 1.09003 * 109.50101 * 62.51822 * 5 3 2 25 25 H 1.09001 * 109.50055 * 302.44663 * 5 3 2 26 26 H 1.08996 * 109.46261 * 299.14560 * 6 5 3 27 27 H 1.09000 * 109.46153 * 179.17108 * 6 5 3 28 28 H 1.00899 * 110.99842 * 62.35535 * 7 6 5 29 29 H 1.09002 * 109.46178 * 301.71804 * 8 7 6 30 30 H 1.09002 * 109.45177 * 181.75074 * 8 7 6 31 31 H 0.97003 * 120.00266 * 5.22663 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6042 1.9839 0.8397 5 6 1.6424 2.1267 -1.3109 6 6 2.2080 3.5486 -1.3314 7 7 3.6705 3.4967 -1.2094 8 6 4.0759 2.8872 0.0636 9 6 3.5659 1.4456 0.1258 10 1 3.9997 0.8706 -0.6923 11 6 3.9637 0.8277 1.4415 12 1 3.2725 0.8329 2.2713 13 6 5.2099 0.2556 1.5857 14 7 6.0154 0.1644 0.5502 15 14 5.7540 -0.3899 3.2520 16 1 5.3583 -1.8152 3.3840 17 1 5.1066 0.4051 4.3263 18 1 7.2296 -0.2729 3.3704 19 1 -0.3634 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 0.5556 2.1663 -1.3857 25 1 2.0447 1.5627 -2.1524 26 1 1.7940 4.1162 -0.4981 27 1 1.9388 4.0330 -2.2701 28 1 4.0815 3.0086 -1.9910 29 1 3.6532 3.4580 0.8904 30 1 5.1633 2.8913 0.1380 31 1 5.7647 0.5666 -0.2963 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260983117.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:25 Heat of formation + Delta-G solvation = -51.425540 kcal Electronic energy + Delta-G solvation = -11771.334029 eV Core-core repulsion = 9857.292274 eV Total energy + Delta-G solvation = -1914.041755 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.08159 -35.38895 -35.08729 -31.29988 -30.44003 -26.43705 -25.19984 -23.23441 -22.14455 -20.97303 -18.82770 -16.74047 -16.04344 -15.66429 -15.53768 -15.05005 -14.71211 -14.62025 -13.74244 -13.18711 -13.03751 -12.77061 -12.67564 -12.54884 -12.11892 -11.97183 -11.85581 -11.55543 -11.41323 -11.08182 -10.59646 -10.33744 -9.18053 -8.56364 -6.24592 1.51343 1.59558 1.76657 2.57146 3.22722 3.51438 3.86790 4.05746 4.20817 4.34243 4.44959 4.56312 4.63034 4.72363 4.75356 4.94450 4.97838 5.04362 5.14081 5.18763 5.24108 5.34048 5.46898 5.59432 5.76068 5.96161 6.23113 6.29294 6.51194 6.73393 7.51858 8.82502 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.038929 B = 0.015413 C = 0.012060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.080859 B = 1816.178762 C = 2321.080794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.106 4.106 3 C -0.069 4.069 4 H 0.046 0.954 5 C -0.144 4.144 6 C 0.060 3.940 7 N -0.695 5.695 8 C 0.078 3.922 9 C 0.002 3.998 10 H -0.001 1.001 11 C -0.589 4.589 12 H 0.040 0.960 13 C -0.031 4.031 14 N -0.941 5.941 15 Si 1.109 2.891 16 H -0.277 1.277 17 H -0.272 1.272 18 H -0.286 1.286 19 H 0.052 0.948 20 H 0.065 0.935 21 H 0.058 0.942 22 H 0.037 0.963 23 H 0.042 0.958 24 H 0.083 0.917 25 H 0.049 0.951 26 H 0.065 0.935 27 H 0.092 0.908 28 H 0.335 0.665 29 H 0.049 0.951 30 H 0.033 0.967 31 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.232 2.691 -2.177 9.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.144 4.144 3 C -0.087 4.087 4 H 0.065 0.935 5 C -0.183 4.183 6 C -0.070 4.070 7 N -0.322 5.322 8 C -0.052 4.052 9 C -0.018 4.018 10 H 0.017 0.983 11 C -0.628 4.628 12 H 0.058 0.942 13 C -0.229 4.229 14 N -0.580 5.580 15 Si 0.932 3.068 16 H -0.203 1.203 17 H -0.197 1.197 18 H -0.212 1.212 19 H 0.071 0.929 20 H 0.084 0.916 21 H 0.077 0.923 22 H 0.056 0.944 23 H 0.061 0.939 24 H 0.102 0.898 25 H 0.068 0.932 26 H 0.084 0.916 27 H 0.111 0.889 28 H 0.151 0.849 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.967 2.579 -1.165 8.454 hybrid contribution -0.997 -0.321 -0.903 1.383 sum -8.963 2.258 -2.068 9.472 Atomic orbital electron populations 1.21758 0.94261 1.01750 1.01977 1.21370 0.96303 0.96469 1.00270 1.21066 0.95595 0.95548 0.96529 0.93534 1.22329 1.01759 0.97386 0.96843 1.22056 0.87050 0.95356 1.02508 1.60787 1.09760 1.57208 1.04472 1.21958 0.97941 0.94690 0.90639 1.19519 0.93206 0.93309 0.95777 0.98266 1.22176 1.01621 1.40589 0.98376 0.94172 1.27057 0.94025 0.95575 1.06229 1.70886 1.40596 1.44155 1.02317 0.83029 0.75815 0.76526 0.71438 1.20323 1.19739 1.21169 0.92888 0.91593 0.92322 0.94441 0.93902 0.89843 0.93195 0.91619 0.88928 0.84904 0.93198 0.94875 0.93234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.06 9.67 71.98 0.70 -3.37 16 2 C -0.11 -4.11 5.28 30.59 0.16 -3.95 16 3 C -0.07 -2.76 1.74 -10.71 -0.02 -2.78 16 4 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 5 C -0.14 -4.65 5.06 30.65 0.16 -4.49 16 6 C 0.06 1.87 6.56 86.32 0.57 2.43 16 7 N -0.69 -26.25 6.87 -514.01 -3.53 -29.78 16 8 C 0.08 3.57 5.82 86.33 0.50 4.08 16 9 C 0.00 0.11 1.48 -11.49 -0.02 0.09 16 10 H 0.00 -0.05 6.68 -2.39 -0.02 -0.06 16 11 C -0.59 -32.55 7.10 25.60 0.18 -32.37 16 12 H 0.04 2.23 7.81 -2.91 -0.02 2.21 16 13 C -0.03 -1.77 5.45 84.66 0.46 -1.30 16 14 N -0.94 -57.46 13.63 21.45 0.29 -57.17 16 15 Si 1.11 50.82 29.91 68.60 2.05 52.87 16 16 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 17 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 18 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 19 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 20 H 0.07 1.67 6.64 -2.39 -0.02 1.65 16 21 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 22 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.04 1.89 7.14 -2.39 -0.02 1.88 16 24 H 0.08 2.24 6.71 -2.39 -0.02 2.22 16 25 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.09 2.35 8.14 -2.39 -0.02 2.34 16 28 H 0.33 12.33 8.86 -89.69 -0.79 11.53 16 29 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.03 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.26 15.83 6.66 -92.71 -0.62 15.21 16 Total: -1.00 -61.43 243.66 1.95 -59.48 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 0.45 Total: 16.26 kcal Atomic # 6 Polarization: -44.36 SS G_CDS: 2.69 Total: -41.67 kcal Atomic # 7 Polarization: -83.70 SS G_CDS: -3.24 Total: -86.94 kcal Atomic # 14 Polarization: 50.82 SS G_CDS: 2.05 Total: 52.87 kcal Total: -61.43 1.95 -59.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260983117.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.050 kcal (2) G-P(sol) polarization free energy of solvation -61.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds