Wall clock time and date at job start Mon Mar 30 2020 02:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47159 * 2 1 4 4 C 1.53006 * 109.47155 * 179.97438 * 3 2 1 5 5 H 1.08997 * 110.64376 * 56.69523 * 4 3 2 6 6 C 1.54937 * 110.72059 * 293.54176 * 4 3 2 7 7 N 1.48537 * 103.22597 * 204.22864 * 6 4 3 8 8 C 1.47906 * 105.82131 * 39.20772 * 7 6 4 9 9 C 1.53999 * 107.05554 * 334.67046 * 8 7 6 10 10 H 1.09003 * 110.30434 * 120.14057 * 9 8 7 11 11 C 1.50695 * 110.30619 * 242.30863 * 9 8 7 12 12 H 1.08003 * 120.00011 * 115.72277 * 11 9 8 13 13 C 1.37881 * 119.99765 * 295.71676 * 11 9 8 14 14 N 1.31515 * 120.00227 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99636 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47119 * 89.99801 * 15 13 11 17 17 H 1.48494 * 109.46932 * 209.99896 * 15 13 11 18 18 H 1.48500 * 109.47173 * 329.99685 * 15 13 11 19 19 H 1.09000 * 109.47154 * 300.00772 * 1 2 3 20 20 H 1.09002 * 109.46816 * 60.00302 * 1 2 3 21 21 H 1.08999 * 109.47469 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47792 * 239.99556 * 2 1 3 23 23 H 1.09000 * 109.46840 * 119.99144 * 2 1 3 24 24 H 1.09000 * 109.47718 * 59.99574 * 3 2 1 25 25 H 1.09002 * 109.47010 * 299.99579 * 3 2 1 26 26 H 1.09001 * 110.66856 * 322.66102 * 6 4 3 27 27 H 1.08995 * 110.66672 * 85.62685 * 6 4 3 28 28 H 1.00898 * 110.99720 * 278.69139 * 7 6 4 29 29 H 1.09000 * 109.91331 * 94.01793 * 8 7 6 30 30 H 1.08993 * 109.91618 * 215.31906 * 8 7 6 31 31 H 0.96995 * 119.99886 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9547 0.8823 -0.8516 6 6 4.1177 0.8639 1.3295 7 7 5.4712 1.4673 1.4307 8 6 5.3290 2.8593 0.9515 9 6 4.1171 2.8884 0.0017 10 1 3.3606 3.5789 0.3748 11 6 4.5498 3.2850 -1.3863 12 1 4.4513 2.5854 -2.2032 13 6 5.0714 4.5409 -1.6133 14 7 5.1918 5.3927 -0.6185 15 14 5.6072 5.0327 -3.3339 16 1 4.4628 5.6499 -4.0512 17 1 6.7212 6.0105 -3.2450 18 1 6.0635 3.8284 -4.0734 19 1 -0.3633 0.5140 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 1.8934 -0.5139 -0.8899 23 1 1.8932 -0.5137 0.8901 24 1 1.6766 1.9564 0.8899 25 1 1.6767 1.9563 -0.8900 26 1 3.4950 1.1728 2.1692 27 1 4.1810 -0.2230 1.2786 28 1 6.1370 0.9578 0.8693 29 1 5.1552 3.5266 1.7956 30 1 6.2285 3.1610 0.4150 31 1 5.5584 6.2763 -0.7783 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260986675.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:39 Heat of formation + Delta-G solvation = -27.753690 kcal Electronic energy + Delta-G solvation = -11450.765531 eV Core-core repulsion = 9537.750264 eV Total energy + Delta-G solvation = -1913.015267 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -37.99344 -34.22106 -32.61438 -29.70154 -28.10226 -24.94308 -23.84823 -21.47038 -20.03810 -18.80691 -16.34508 -15.26142 -14.83068 -14.32241 -14.04508 -13.00532 -12.71060 -12.46956 -12.22974 -11.75550 -11.29560 -11.22669 -10.87773 -10.83663 -10.54391 -10.42958 -10.07433 -10.02032 -9.59877 -9.05954 -8.83487 -8.50632 -7.56906 -6.02797 -4.05532 3.28986 3.36087 3.38746 4.42343 5.19052 5.30948 5.34569 5.44466 5.53969 5.82853 5.86186 6.08286 6.13847 6.18254 6.26403 6.39493 6.47910 6.64862 6.75677 6.88068 6.95428 7.05306 7.24706 7.51735 7.77824 7.83430 8.02816 8.21474 8.50757 8.98003 9.58013 11.06694 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.040532 B = 0.012475 C = 0.010399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.652705 B = 2244.005020 C = 2691.791719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.100 4.100 4 C -0.119 4.119 5 H 0.062 0.938 6 C 0.046 3.954 7 N -0.689 5.689 8 C 0.064 3.936 9 C 0.029 3.971 10 H 0.032 0.968 11 C -0.513 4.513 12 H 0.053 0.947 13 C 0.061 3.939 14 N -0.888 5.888 15 Si 0.889 3.111 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.275 1.275 19 H 0.051 0.949 20 H 0.051 0.949 21 H 0.046 0.954 22 H 0.055 0.945 23 H 0.057 0.943 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.324 0.676 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.507 -7.654 1.075 8.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.139 4.139 4 C -0.139 4.139 5 H 0.081 0.919 6 C -0.083 4.083 7 N -0.315 5.315 8 C -0.065 4.065 9 C 0.010 3.990 10 H 0.051 0.949 11 C -0.551 4.551 12 H 0.072 0.928 13 C -0.141 4.141 14 N -0.527 5.527 15 Si 0.717 3.283 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.200 1.200 19 H 0.070 0.930 20 H 0.071 0.929 21 H 0.065 0.935 22 H 0.074 0.926 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.071 0.929 28 H 0.137 0.863 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.427 -7.308 1.865 8.746 hybrid contribution 0.183 0.354 -1.982 2.022 sum -4.244 -6.954 -0.117 8.148 Atomic orbital electron populations 1.21780 0.96711 1.00695 1.01622 1.21580 0.94997 0.98250 1.01366 1.21481 0.95808 0.94942 1.01622 1.22838 0.94378 0.99813 0.96851 0.91925 1.23081 0.91295 0.96970 0.96994 1.62939 1.07120 1.05200 1.56231 1.22758 1.00756 0.86551 0.96395 1.19873 0.93707 0.90033 0.95436 0.94936 1.21189 1.41508 0.98728 0.93695 0.92836 1.25001 0.95843 0.96580 0.96685 1.69970 1.45331 1.06669 1.30685 0.86643 0.78303 0.78364 0.84992 1.20732 1.21234 1.20000 0.93010 0.92949 0.93497 0.92587 0.92442 0.92744 0.92098 0.91620 0.92858 0.86280 0.93252 0.91758 0.92980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 37.16 0.37 -1.53 16 2 C -0.12 -1.81 5.78 -26.73 -0.15 -1.97 16 3 C -0.10 -1.80 4.60 -26.73 -0.12 -1.92 16 4 C -0.12 -2.43 2.62 -88.75 -0.23 -2.66 16 5 H 0.06 1.33 7.69 -51.93 -0.40 0.93 16 6 C 0.05 0.87 6.17 -1.90 -0.01 0.86 16 7 N -0.69 -14.25 7.51 -110.08 -0.83 -15.08 16 8 C 0.06 1.57 6.42 -2.75 -0.02 1.55 16 9 C 0.03 0.73 2.45 -90.41 -0.22 0.51 16 10 H 0.03 0.89 7.85 -51.93 -0.41 0.48 16 11 C -0.51 -14.03 8.33 -34.44 -0.29 -14.32 16 12 H 0.05 1.46 7.55 -52.48 -0.40 1.06 16 13 C 0.06 1.69 5.12 -17.82 -0.09 1.59 16 14 N -0.89 -25.64 12.55 55.43 0.70 -24.94 16 15 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 20 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 21 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.06 0.80 7.42 -51.93 -0.39 0.41 16 24 H 0.05 0.97 8.10 -51.93 -0.42 0.55 16 25 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.07 1.22 8.02 -51.93 -0.42 0.80 16 27 H 0.05 0.87 8.04 -51.93 -0.42 0.46 16 28 H 0.32 6.27 8.92 -39.29 -0.35 5.92 16 29 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.06 1.69 7.31 -51.93 -0.38 1.31 16 31 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 250.38 15.07 3.77 3.77 Total: -1.00 -28.02 250.38 -7.39 -35.41 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -5.24 Total: 2.39 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: -0.77 Total: -17.89 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: -0.13 Total: -40.02 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -28.02 -7.39 -35.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260986675.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.661 kcal (2) G-P(sol) polarization free energy of solvation -28.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds