Wall clock time and date at job start Mon Mar 30 2020 02:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47159 * 2 1 4 4 C 1.53006 * 109.47155 * 179.97438 * 3 2 1 5 5 H 1.08997 * 110.64376 * 56.69523 * 4 3 2 6 6 C 1.54937 * 110.72059 * 293.54176 * 4 3 2 7 7 N 1.48537 * 103.22597 * 204.22864 * 6 4 3 8 8 C 1.47906 * 105.82131 * 39.20772 * 7 6 4 9 9 C 1.53999 * 107.05554 * 334.67046 * 8 7 6 10 10 H 1.09003 * 110.30434 * 120.14057 * 9 8 7 11 11 C 1.50695 * 110.30619 * 242.30863 * 9 8 7 12 12 H 1.08003 * 120.00011 * 115.72277 * 11 9 8 13 13 C 1.37881 * 119.99765 * 295.71676 * 11 9 8 14 14 N 1.31515 * 120.00227 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99636 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47119 * 89.99801 * 15 13 11 17 17 H 1.48494 * 109.46932 * 209.99896 * 15 13 11 18 18 H 1.48500 * 109.47173 * 329.99685 * 15 13 11 19 19 H 1.09000 * 109.47154 * 300.00772 * 1 2 3 20 20 H 1.09002 * 109.46816 * 60.00302 * 1 2 3 21 21 H 1.08999 * 109.47469 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47792 * 239.99556 * 2 1 3 23 23 H 1.09000 * 109.46840 * 119.99144 * 2 1 3 24 24 H 1.09000 * 109.47718 * 59.99574 * 3 2 1 25 25 H 1.09002 * 109.47010 * 299.99579 * 3 2 1 26 26 H 1.09001 * 110.66856 * 322.66102 * 6 4 3 27 27 H 1.08995 * 110.66672 * 85.62685 * 6 4 3 28 28 H 1.00898 * 110.99720 * 278.69139 * 7 6 4 29 29 H 1.09000 * 109.91331 * 94.01793 * 8 7 6 30 30 H 1.08993 * 109.91618 * 215.31906 * 8 7 6 31 31 H 0.96995 * 119.99886 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9547 0.8823 -0.8516 6 6 4.1177 0.8639 1.3295 7 7 5.4712 1.4673 1.4307 8 6 5.3290 2.8593 0.9515 9 6 4.1171 2.8884 0.0017 10 1 3.3606 3.5789 0.3748 11 6 4.5498 3.2850 -1.3863 12 1 4.4513 2.5854 -2.2032 13 6 5.0714 4.5409 -1.6133 14 7 5.1918 5.3927 -0.6185 15 14 5.6072 5.0327 -3.3339 16 1 4.4628 5.6499 -4.0512 17 1 6.7212 6.0105 -3.2450 18 1 6.0635 3.8284 -4.0734 19 1 -0.3633 0.5140 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 1.8934 -0.5139 -0.8899 23 1 1.8932 -0.5137 0.8901 24 1 1.6766 1.9564 0.8899 25 1 1.6767 1.9563 -0.8900 26 1 3.4950 1.1728 2.1692 27 1 4.1810 -0.2230 1.2786 28 1 6.1370 0.9578 0.8693 29 1 5.1552 3.5266 1.7956 30 1 6.2285 3.1610 0.4150 31 1 5.5584 6.2763 -0.7783 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260986675.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:39 Heat of formation + Delta-G solvation = -45.919841 kcal Electronic energy + Delta-G solvation = -11451.553274 eV Core-core repulsion = 9537.750264 eV Total energy + Delta-G solvation = -1913.803010 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.72257 -35.60376 -34.66413 -31.29769 -29.91588 -26.66304 -25.62109 -22.91612 -21.63571 -20.60637 -18.38868 -17.14812 -16.25107 -16.14270 -15.60079 -14.54942 -14.43002 -14.02485 -13.79240 -13.34076 -13.00550 -12.81684 -12.65435 -12.43694 -12.17937 -12.08244 -11.76640 -11.48656 -11.28076 -10.92485 -10.73396 -10.62272 -9.34704 -8.16182 -6.25743 1.38229 1.39071 1.49091 2.40066 3.14715 3.59537 4.01215 4.13685 4.26780 4.39394 4.48574 4.60786 4.77847 4.85983 4.96550 4.99184 5.03287 5.12328 5.26866 5.33297 5.36338 5.49292 5.54660 5.57290 5.73114 5.82961 6.09996 6.29999 6.65808 6.86950 7.41398 8.93034 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.040532 B = 0.012475 C = 0.010399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.652705 B = 2244.005020 C = 2691.791719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.096 4.096 4 C -0.111 4.111 5 H 0.057 0.943 6 C 0.053 3.947 7 N -0.684 5.684 8 C 0.079 3.921 9 C 0.021 3.979 10 H -0.003 1.003 11 C -0.527 4.527 12 H 0.051 0.949 13 C 0.010 3.990 14 N -0.919 5.919 15 Si 0.953 3.047 16 H -0.277 1.277 17 H -0.283 1.283 18 H -0.267 1.267 19 H 0.053 0.947 20 H 0.047 0.953 21 H 0.068 0.932 22 H 0.058 0.942 23 H 0.071 0.929 24 H 0.050 0.950 25 H 0.040 0.960 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.334 0.666 29 H 0.029 0.971 30 H 0.037 0.963 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.897 -9.353 0.686 10.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.134 4.134 4 C -0.131 4.131 5 H 0.076 0.924 6 C -0.076 4.076 7 N -0.310 5.310 8 C -0.051 4.051 9 C 0.002 3.998 10 H 0.016 0.984 11 C -0.565 4.565 12 H 0.069 0.931 13 C -0.188 4.188 14 N -0.559 5.559 15 Si 0.779 3.221 16 H -0.202 1.202 17 H -0.209 1.209 18 H -0.192 1.192 19 H 0.073 0.927 20 H 0.066 0.934 21 H 0.087 0.913 22 H 0.077 0.923 23 H 0.090 0.910 24 H 0.069 0.931 25 H 0.059 0.941 26 H 0.088 0.912 27 H 0.108 0.892 28 H 0.149 0.851 29 H 0.047 0.953 30 H 0.056 0.944 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.821 -9.029 1.475 10.342 hybrid contribution 0.295 0.885 -1.836 2.059 sum -4.526 -8.145 -0.361 9.325 Atomic orbital electron populations 1.21761 0.95142 1.02128 1.01606 1.21514 0.96371 0.95400 1.02177 1.21421 0.93999 0.97496 1.00523 1.22718 0.96061 0.96562 0.97758 0.92423 1.23138 0.89769 0.98838 0.95859 1.62860 1.08680 1.03499 1.55991 1.22391 0.99162 0.88470 0.95070 1.19864 0.93222 0.92322 0.94433 0.98449 1.21499 1.41397 0.98957 0.94691 0.93082 1.25789 0.95939 0.96662 1.00454 1.70095 1.46118 1.06954 1.32686 0.85623 0.77914 0.78139 0.80412 1.20240 1.20910 1.19174 0.92745 0.93370 0.91319 0.92292 0.91034 0.93104 0.94065 0.91239 0.89226 0.85116 0.95260 0.94426 0.92994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 9.91 71.98 0.71 -2.64 16 2 C -0.12 -3.09 5.78 30.59 0.18 -2.91 16 3 C -0.10 -3.36 4.60 30.60 0.14 -3.22 16 4 C -0.11 -4.44 2.62 -9.59 -0.03 -4.47 16 5 H 0.06 2.36 7.69 -2.39 -0.02 2.35 16 6 C 0.05 1.87 6.17 86.65 0.53 2.40 16 7 N -0.68 -27.44 7.51 -502.18 -3.77 -31.22 16 8 C 0.08 3.91 6.42 86.45 0.55 4.46 16 9 C 0.02 1.09 2.45 -10.66 -0.03 1.07 16 10 H 0.00 -0.15 7.85 -2.39 -0.02 -0.17 16 11 C -0.53 -29.25 8.33 25.60 0.21 -29.04 16 12 H 0.05 2.79 7.55 -2.91 -0.02 2.77 16 13 C 0.01 0.59 5.12 84.66 0.43 1.02 16 14 N -0.92 -54.30 12.55 21.45 0.27 -54.03 16 15 Si 0.95 44.04 29.54 68.60 2.03 46.06 16 16 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 17 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 18 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 19 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 20 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 21 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 22 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.07 1.70 7.42 -2.39 -0.02 1.69 16 24 H 0.05 1.79 8.10 -2.39 -0.02 1.77 16 25 H 0.04 1.57 8.14 -2.39 -0.02 1.56 16 26 H 0.07 2.42 8.02 -2.39 -0.02 2.40 16 27 H 0.09 2.56 8.04 -2.39 -0.02 2.54 16 28 H 0.33 12.38 8.92 -89.70 -0.80 11.58 16 29 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.04 2.03 7.31 -2.39 -0.02 2.01 16 31 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -60.28 250.38 1.52 -58.76 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.28 Total: 13.74 kcal Atomic # 6 Polarization: -36.04 SS G_CDS: 2.72 Total: -33.32 kcal Atomic # 7 Polarization: -81.74 SS G_CDS: -3.50 Total: -85.25 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Total: -60.28 1.52 -58.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260986675.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.841 kcal (2) G-P(sol) polarization free energy of solvation -60.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds