Wall clock time and date at job start Mon Mar 30 2020 02:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47211 * 2 1 4 4 N 1.46899 * 109.47015 * 120.00418 * 2 1 3 5 5 C 1.47963 * 110.99843 * 276.92948 * 4 2 1 6 6 C 1.53935 * 86.18093 * 222.41673 * 5 4 2 7 7 C 1.47964 * 110.99850 * 177.57559 * 4 2 1 8 8 H 1.08996 * 113.86154 * 23.25031 * 7 4 2 9 9 C 1.53001 * 113.75643 * 251.90018 * 7 4 2 10 10 C 1.50696 * 109.47381 * 68.93459 * 9 7 4 11 11 H 1.08002 * 119.99818 * 359.97438 * 10 9 7 12 12 C 1.37877 * 120.00137 * 180.27719 * 10 9 7 13 13 N 1.31520 * 119.99947 * 359.72222 * 12 10 9 14 14 Si 1.86799 * 120.00134 * 179.72605 * 12 10 9 15 15 H 1.48494 * 109.47227 * 89.99741 * 14 12 10 16 16 H 1.48504 * 109.47051 * 209.99904 * 14 12 10 17 17 H 1.48498 * 109.46902 * 329.99353 * 14 12 10 18 18 H 1.09005 * 109.47467 * 300.00132 * 1 2 3 19 19 H 1.09000 * 109.47347 * 59.99605 * 1 2 3 20 20 H 1.08999 * 109.47535 * 179.97438 * 1 2 3 21 21 H 1.08995 * 109.46904 * 240.00393 * 2 1 3 22 22 H 1.08996 * 109.47275 * 170.00140 * 3 2 1 23 23 H 1.08993 * 109.47145 * 290.00757 * 3 2 1 24 24 H 1.09009 * 109.46803 * 50.00671 * 3 2 1 25 25 H 1.09007 * 113.75189 * 108.10274 * 5 4 2 26 26 H 1.08999 * 113.85879 * 336.75647 * 5 4 2 27 27 H 1.08993 * 113.73693 * 269.36287 * 6 5 4 28 28 H 1.09007 * 113.72519 * 138.07937 * 6 5 4 29 29 H 1.09001 * 109.46841 * 308.92955 * 9 7 4 30 30 H 1.09000 * 109.47050 * 188.93703 * 9 7 4 31 31 H 0.96994 * 120.00048 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 2.0392 0.2172 2.3661 6 6 3.4065 -0.4064 2.6994 7 6 3.4975 -0.7631 1.2047 8 1 3.9778 0.0048 0.5984 9 6 4.0486 -2.1653 0.9380 10 6 3.7700 -2.5510 -0.4919 11 1 3.2514 -1.8649 -1.1450 12 6 4.1718 -3.7824 -0.9645 13 7 4.8030 -4.6181 -0.1690 14 14 3.8197 -4.2635 -2.7348 15 1 4.9518 -3.8401 -3.5974 16 1 3.6535 -5.7366 -2.8237 17 1 2.5736 -3.5966 -3.1905 18 1 -0.3634 0.5139 0.8900 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3634 -1.0276 -0.0005 21 1 1.8932 -0.5138 -0.8900 22 1 3.1152 1.4477 0.1784 23 1 1.8296 1.9022 -0.9656 24 1 1.5383 2.0052 0.7874 25 1 1.2665 0.0014 3.1041 26 1 2.0909 1.2732 2.1010 27 1 3.3446 -1.2751 3.3547 28 1 4.1524 0.3195 3.0234 29 1 3.5670 -2.8783 1.6072 30 1 5.1244 -2.1722 1.1132 31 1 5.0859 -5.4842 -0.5016 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261027590.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:11 Heat of formation + Delta-G solvation = 26.531028 kcal Electronic energy + Delta-G solvation = -11602.625289 eV Core-core repulsion = 9691.963984 eV Total energy + Delta-G solvation = -1910.661305 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.72299 -33.62771 -32.68629 -29.07384 -26.95715 -26.60671 -24.56337 -21.75948 -20.15832 -18.14882 -16.22215 -16.02647 -14.66473 -14.38673 -13.74189 -13.35105 -12.87727 -12.49780 -12.13609 -11.88746 -11.25186 -11.13375 -11.04104 -10.84957 -10.64825 -10.49040 -10.37043 -9.97534 -9.87024 -9.10943 -8.87879 -8.27042 -7.83862 -5.90437 -3.90256 3.36531 3.42860 3.46334 4.52441 4.63841 5.25421 5.32022 5.37246 5.46261 5.60494 5.64085 5.88000 5.90152 6.00013 6.10028 6.15346 6.31198 6.33093 6.35828 6.56287 6.62851 6.77803 6.99061 7.26387 7.69876 7.74648 8.06741 8.14913 8.52859 9.13944 9.71496 11.21218 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.043232 B = 0.013312 C = 0.011093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.514375 B = 2102.875185 C = 2523.549260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.039 3.961 3 C -0.183 4.183 4 N -0.454 5.454 5 C -0.020 4.020 6 C -0.149 4.149 7 C 0.046 3.954 8 H 0.065 0.935 9 C 0.038 3.962 10 C -0.502 4.502 11 H 0.053 0.947 12 C 0.055 3.945 13 N -0.898 5.898 14 Si 0.888 3.112 15 H -0.283 1.283 16 H -0.287 1.287 17 H -0.275 1.275 18 H 0.046 0.954 19 H 0.048 0.952 20 H 0.061 0.939 21 H 0.091 0.909 22 H 0.060 0.940 23 H 0.053 0.947 24 H 0.056 0.944 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.056 0.944 29 H 0.025 0.975 30 H 0.019 0.981 31 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.021 9.914 2.075 11.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.070 4.070 3 C -0.241 4.241 4 N -0.177 5.177 5 C -0.148 4.148 6 C -0.187 4.187 7 C -0.063 4.063 8 H 0.083 0.917 9 C 0.001 3.999 10 C -0.541 4.541 11 H 0.071 0.929 12 C -0.145 4.145 13 N -0.538 5.538 14 Si 0.716 3.284 15 H -0.209 1.209 16 H -0.213 1.213 17 H -0.200 1.200 18 H 0.065 0.935 19 H 0.067 0.933 20 H 0.080 0.920 21 H 0.109 0.891 22 H 0.079 0.921 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.103 0.897 28 H 0.075 0.925 29 H 0.043 0.957 30 H 0.038 0.962 31 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.353 9.130 2.073 10.785 hybrid contribution 0.220 0.441 -1.178 1.277 sum -5.133 9.571 0.895 10.898 Atomic orbital electron populations 1.21686 0.95166 1.02026 1.00227 1.22122 0.95525 0.92436 0.96949 1.22523 1.01694 0.98572 1.01322 1.68770 1.13296 1.34340 1.01299 1.24083 0.98013 0.96800 0.95947 1.23456 0.96025 1.00388 0.98873 1.23649 0.88312 1.01242 0.93064 0.91672 1.18994 0.95255 0.88635 0.97021 1.21118 1.36000 1.00616 0.96338 0.92904 1.24983 0.95573 0.96676 0.97302 1.69958 1.40100 1.08482 1.35285 0.86661 0.78521 0.77626 0.85583 1.20897 1.21328 1.19988 0.93537 0.93300 0.92002 0.89111 0.92124 0.92765 0.92561 0.90856 0.91127 0.89707 0.92490 0.95668 0.96246 0.93186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 9.38 37.16 0.35 -1.72 16 2 C 0.04 0.70 3.02 -67.72 -0.20 0.49 16 3 C -0.18 -2.72 7.81 37.16 0.29 -2.43 16 4 N -0.45 -9.04 5.92 -222.73 -1.32 -10.36 16 5 C -0.02 -0.32 7.43 -2.76 -0.02 -0.34 16 6 C -0.15 -2.64 7.85 -25.80 -0.20 -2.84 16 7 C 0.05 0.97 2.96 -66.65 -0.20 0.77 16 8 H 0.07 1.35 6.01 -51.93 -0.31 1.04 16 9 C 0.04 1.01 5.02 -27.88 -0.14 0.87 16 10 C -0.50 -14.32 9.05 -34.44 -0.31 -14.63 16 11 H 0.05 1.47 5.98 -52.49 -0.31 1.16 16 12 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 13 N -0.90 -27.47 13.29 55.43 0.74 -26.73 16 14 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 15 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 17 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 18 H 0.05 0.66 8.00 -51.93 -0.42 0.25 16 19 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 20 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 21 H 0.09 1.87 6.38 -51.93 -0.33 1.54 16 22 H 0.06 0.94 5.96 -51.93 -0.31 0.63 16 23 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.06 0.75 6.39 -51.92 -0.33 0.42 16 25 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.07 1.03 4.99 -51.93 -0.26 0.77 16 27 H 0.08 1.55 8.08 -51.93 -0.42 1.13 16 28 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 29 H 0.02 0.72 8.12 -51.93 -0.42 0.30 16 30 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 245.13 15.07 3.69 3.69 Total: -1.00 -30.17 245.13 -7.23 -37.40 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: -4.79 Total: -2.79 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: -0.54 Total: -18.33 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: -0.58 Total: -37.09 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -30.17 -7.23 -37.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261027590.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.928 kcal (2) G-P(sol) polarization free energy of solvation -30.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds