Wall clock time and date at job start Mon Mar 30 2020 02:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47211 * 2 1 4 4 N 1.46899 * 109.47015 * 120.00418 * 2 1 3 5 5 C 1.47963 * 110.99843 * 276.92948 * 4 2 1 6 6 C 1.53935 * 86.18093 * 222.41673 * 5 4 2 7 7 C 1.47964 * 110.99850 * 177.57559 * 4 2 1 8 8 H 1.08996 * 113.86154 * 23.25031 * 7 4 2 9 9 C 1.53001 * 113.75643 * 251.90018 * 7 4 2 10 10 C 1.50696 * 109.47381 * 68.93459 * 9 7 4 11 11 H 1.08002 * 119.99818 * 359.97438 * 10 9 7 12 12 C 1.37877 * 120.00137 * 180.27719 * 10 9 7 13 13 N 1.31520 * 119.99947 * 359.72222 * 12 10 9 14 14 Si 1.86799 * 120.00134 * 179.72605 * 12 10 9 15 15 H 1.48494 * 109.47227 * 89.99741 * 14 12 10 16 16 H 1.48504 * 109.47051 * 209.99904 * 14 12 10 17 17 H 1.48498 * 109.46902 * 329.99353 * 14 12 10 18 18 H 1.09005 * 109.47467 * 300.00132 * 1 2 3 19 19 H 1.09000 * 109.47347 * 59.99605 * 1 2 3 20 20 H 1.08999 * 109.47535 * 179.97438 * 1 2 3 21 21 H 1.08995 * 109.46904 * 240.00393 * 2 1 3 22 22 H 1.08996 * 109.47275 * 170.00140 * 3 2 1 23 23 H 1.08993 * 109.47145 * 290.00757 * 3 2 1 24 24 H 1.09009 * 109.46803 * 50.00671 * 3 2 1 25 25 H 1.09007 * 113.75189 * 108.10274 * 5 4 2 26 26 H 1.08999 * 113.85879 * 336.75647 * 5 4 2 27 27 H 1.08993 * 113.73693 * 269.36287 * 6 5 4 28 28 H 1.09007 * 113.72519 * 138.07937 * 6 5 4 29 29 H 1.09001 * 109.46841 * 308.92955 * 9 7 4 30 30 H 1.09000 * 109.47050 * 188.93703 * 9 7 4 31 31 H 0.96994 * 120.00048 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 2.0392 0.2172 2.3661 6 6 3.4065 -0.4064 2.6994 7 6 3.4975 -0.7631 1.2047 8 1 3.9778 0.0048 0.5984 9 6 4.0486 -2.1653 0.9380 10 6 3.7700 -2.5510 -0.4919 11 1 3.2514 -1.8649 -1.1450 12 6 4.1718 -3.7824 -0.9645 13 7 4.8030 -4.6181 -0.1690 14 14 3.8197 -4.2635 -2.7348 15 1 4.9518 -3.8401 -3.5974 16 1 3.6535 -5.7366 -2.8237 17 1 2.5736 -3.5966 -3.1905 18 1 -0.3634 0.5139 0.8900 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3634 -1.0276 -0.0005 21 1 1.8932 -0.5138 -0.8900 22 1 3.1152 1.4477 0.1784 23 1 1.8296 1.9022 -0.9656 24 1 1.5383 2.0052 0.7874 25 1 1.2665 0.0014 3.1041 26 1 2.0909 1.2732 2.1010 27 1 3.3446 -1.2751 3.3547 28 1 4.1524 0.3195 3.0234 29 1 3.5670 -2.8783 1.6072 30 1 5.1244 -2.1722 1.1132 31 1 5.0859 -5.4842 -0.5016 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261027590.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:11 Heat of formation + Delta-G solvation = 5.874987 kcal Electronic energy + Delta-G solvation = -11603.521002 eV Core-core repulsion = 9691.963984 eV Total energy + Delta-G solvation = -1911.557018 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.19509 -35.34809 -34.54205 -31.08652 -28.18219 -27.98194 -26.49747 -23.54067 -21.63457 -19.68423 -18.39385 -17.44701 -16.61211 -15.88584 -15.34308 -14.85940 -14.37902 -14.08394 -13.67205 -13.20815 -13.11566 -13.07346 -12.66481 -12.50673 -12.25804 -12.13824 -11.80962 -11.66581 -11.36990 -10.96136 -10.82576 -10.51245 -9.31672 -8.14809 -6.22556 1.37521 1.39348 1.49840 2.42231 3.14525 3.24358 3.83354 3.99344 4.06748 4.28511 4.33762 4.51224 4.63766 4.74258 4.77568 4.93645 4.97026 4.98431 5.01459 5.18134 5.23923 5.31290 5.44500 5.51652 5.62622 5.85565 5.93587 6.31470 6.52069 6.91454 7.43901 8.97228 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.043232 B = 0.013312 C = 0.011093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.514375 B = 2102.875185 C = 2523.549260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.033 3.967 3 C -0.174 4.174 4 N -0.486 5.486 5 C -0.004 4.004 6 C -0.142 4.142 7 C 0.041 3.959 8 H 0.071 0.929 9 C 0.044 3.956 10 C -0.515 4.515 11 H 0.056 0.944 12 C -0.004 4.004 13 N -0.937 5.937 14 Si 0.958 3.042 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.267 1.267 18 H 0.063 0.937 19 H 0.069 0.931 20 H 0.041 0.959 21 H 0.053 0.947 22 H 0.051 0.949 23 H 0.068 0.932 24 H 0.079 0.921 25 H 0.087 0.913 26 H 0.098 0.902 27 H 0.071 0.929 28 H 0.083 0.917 29 H -0.010 1.010 30 H -0.006 1.006 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.113 11.783 1.627 13.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.076 4.076 3 C -0.232 4.232 4 N -0.209 5.209 5 C -0.132 4.132 6 C -0.180 4.180 7 C -0.068 4.068 8 H 0.089 0.911 9 C 0.006 3.994 10 C -0.553 4.553 11 H 0.074 0.926 12 C -0.200 4.200 13 N -0.578 5.578 14 Si 0.783 3.217 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.192 1.192 18 H 0.082 0.918 19 H 0.088 0.912 20 H 0.060 0.940 21 H 0.071 0.929 22 H 0.070 0.930 23 H 0.087 0.913 24 H 0.098 0.902 25 H 0.105 0.895 26 H 0.115 0.885 27 H 0.090 0.910 28 H 0.102 0.898 29 H 0.008 0.992 30 H 0.012 0.988 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.453 11.019 1.627 12.873 hybrid contribution 0.556 -0.150 -1.013 1.165 sum -5.897 10.869 0.615 12.381 Atomic orbital electron populations 1.21633 0.93305 1.01356 1.02140 1.22145 0.97022 0.93759 0.94684 1.22424 1.01148 0.96553 1.03124 1.68686 1.11886 1.36922 1.03385 1.24121 0.97246 0.97482 0.94323 1.23383 0.97992 1.00690 0.95931 1.23431 0.89595 0.97781 0.95972 0.91142 1.18829 0.93590 0.91511 0.95445 1.21502 1.35560 1.00859 0.97425 0.92630 1.25908 0.95382 0.96757 1.01985 1.70098 1.41266 1.08948 1.37483 0.85550 0.78801 0.77266 0.80054 1.19711 1.20949 1.19169 0.91766 0.91183 0.94003 0.92863 0.92997 0.91276 0.90213 0.89456 0.88478 0.91022 0.89805 0.99168 0.98774 0.93056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.64 9.38 71.98 0.68 -2.97 16 2 C 0.03 1.13 3.02 44.91 0.14 1.27 16 3 C -0.17 -4.64 7.81 71.98 0.56 -4.08 16 4 N -0.49 -18.86 5.92 -858.59 -5.08 -23.94 16 5 C 0.00 -0.11 7.43 86.41 0.64 0.53 16 6 C -0.14 -4.81 7.85 31.24 0.25 -4.57 16 7 C 0.04 1.74 2.96 45.02 0.13 1.87 16 8 H 0.07 2.88 6.01 -2.39 -0.01 2.87 16 9 C 0.04 2.39 5.02 29.85 0.15 2.54 16 10 C -0.52 -30.12 9.05 25.60 0.23 -29.89 16 11 H 0.06 3.15 5.98 -2.91 -0.02 3.14 16 12 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 13 N -0.94 -58.85 13.29 21.45 0.28 -58.56 16 14 Si 0.96 45.95 29.54 68.60 2.03 47.98 16 15 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 16 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 17 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 18 H 0.06 1.61 8.00 -2.38 -0.02 1.59 16 19 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 20 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 21 H 0.05 2.20 6.38 -2.39 -0.02 2.18 16 22 H 0.05 1.47 5.96 -2.39 -0.01 1.46 16 23 H 0.07 1.63 8.14 -2.39 -0.02 1.62 16 24 H 0.08 1.75 6.39 -2.38 -0.02 1.74 16 25 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 26 H 0.10 2.39 4.99 -2.39 -0.01 2.37 16 27 H 0.07 2.60 8.08 -2.39 -0.02 2.58 16 28 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 29 H -0.01 -0.61 8.12 -2.39 -0.02 -0.63 16 30 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 31 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -66.32 245.13 1.55 -64.77 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: 1.09 Total: 4.80 kcal Atomic # 6 Polarization: -38.29 SS G_CDS: 3.24 Total: -35.05 kcal Atomic # 7 Polarization: -77.71 SS G_CDS: -4.80 Total: -82.51 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -66.32 1.55 -64.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261027590.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.647 kcal (2) G-P(sol) polarization free energy of solvation -66.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds