Wall clock time and date at job start Mon Mar 30 2020 01:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47229 * 2 1 4 4 C 1.53005 * 109.90570 * 63.90044 * 3 2 1 5 5 N 1.47904 * 109.91550 * 302.59441 * 3 2 1 6 6 C 1.48540 * 105.81480 * 215.31325 * 5 3 2 7 7 C 1.55094 * 103.28506 * 39.15660 * 6 5 3 8 8 C 1.53991 * 109.92071 * 185.00290 * 3 2 1 9 9 H 1.09005 * 110.30972 * 239.59738 * 8 3 2 10 10 C 1.50706 * 110.30432 * 1.65821 * 8 3 2 11 11 H 1.07999 * 120.00193 * 358.62024 * 10 8 3 12 12 C 1.37879 * 119.99398 * 178.61105 * 10 8 3 13 13 N 1.31514 * 119.99350 * 180.02562 * 12 10 8 14 14 Si 1.86798 * 120.00608 * 0.02562 * 12 10 8 15 15 H 1.48493 * 109.47326 * 270.00340 * 14 12 10 16 16 H 1.48506 * 109.46545 * 30.00090 * 14 12 10 17 17 H 1.48498 * 109.47210 * 149.99801 * 14 12 10 18 18 H 1.09004 * 109.47392 * 59.99523 * 1 2 3 19 19 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 20 20 H 1.09008 * 109.46737 * 299.99765 * 1 2 3 21 21 H 1.08995 * 109.46853 * 240.00365 * 2 1 3 22 22 H 1.09000 * 109.47282 * 120.00007 * 2 1 3 23 23 H 1.09001 * 109.46987 * 181.10454 * 4 3 2 24 24 H 1.09010 * 109.46929 * 301.10196 * 4 3 2 25 25 H 1.08993 * 109.47052 * 61.10055 * 4 3 2 26 26 H 1.00900 * 111.00309 * 94.80828 * 5 3 2 27 27 H 1.09003 * 110.66211 * 157.64421 * 6 5 3 28 28 H 1.08993 * 110.66977 * 280.60191 * 6 5 3 29 29 H 1.09002 * 110.80819 * 204.33752 * 7 6 5 30 30 H 1.08995 * 110.71589 * 80.99839 * 7 6 5 31 31 H 0.97005 * 119.99661 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6170 2.1446 1.2919 5 7 1.5017 2.1672 -1.1716 6 6 2.5778 3.0960 -1.6026 7 6 3.8688 2.2569 -1.4157 8 6 3.5747 1.4564 -0.1263 9 1 4.0208 1.9513 0.7364 10 6 4.1018 0.0501 -0.2519 11 1 3.4200 -0.7869 -0.2215 12 6 5.4546 -0.1677 -0.4056 13 7 5.9145 -1.3949 -0.5158 14 14 6.6339 1.2799 -0.4576 15 1 6.7996 1.7334 -1.8619 16 1 6.0881 2.3925 0.3607 17 1 7.9515 0.8649 0.0873 18 1 -0.3634 0.5139 -0.8900 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8901 21 1 1.8932 -0.5138 -0.8900 22 1 1.8933 -0.5138 0.8900 23 1 1.9669 3.1768 1.2758 24 1 0.5300 2.1307 1.3739 25 1 2.0524 1.6266 2.1463 26 1 0.6629 2.6732 -0.9297 27 1 2.4485 3.3758 -2.6481 28 1 2.5982 3.9821 -0.9683 29 1 4.7349 2.9043 -1.2785 30 1 4.0179 1.5853 -2.2610 31 1 6.8662 -1.5482 -0.6243 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261109871.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:57 Heat of formation + Delta-G solvation = -22.033685 kcal Electronic energy + Delta-G solvation = -11953.774020 eV Core-core repulsion = 10041.006791 eV Total energy + Delta-G solvation = -1912.767229 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.35994 -34.78984 -34.31591 -31.70214 -30.12532 -27.70353 -25.27859 -23.88271 -21.82377 -19.79080 -18.34772 -17.11516 -16.37570 -15.83992 -15.24187 -15.03321 -14.43209 -14.14711 -13.63740 -13.37299 -13.10121 -12.84784 -12.76238 -12.50897 -12.14662 -11.81166 -11.67657 -11.52672 -11.45429 -10.91602 -10.65976 -10.60444 -9.24497 -8.20912 -6.21915 1.31845 1.33811 1.42873 2.37229 3.12145 3.46233 4.03401 4.10679 4.29930 4.37339 4.46814 4.63493 4.66163 4.78118 4.81488 4.86500 5.01156 5.16118 5.21695 5.24373 5.35102 5.45550 5.50787 5.54994 5.72518 5.84722 6.18357 6.42581 6.77318 6.86502 7.41934 8.94104 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.044304 B = 0.017279 C = 0.014335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.851411 B = 1620.087542 C = 1952.805369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.081 4.081 3 C 0.109 3.891 4 C -0.160 4.160 5 N -0.663 5.663 6 C 0.049 3.951 7 C -0.134 4.134 8 C 0.004 3.996 9 H 0.024 0.976 10 C -0.508 4.508 11 H 0.065 0.935 12 C 0.010 3.990 13 N -0.954 5.954 14 Si 0.933 3.067 15 H -0.270 1.270 16 H -0.249 1.249 17 H -0.298 1.298 18 H 0.062 0.938 19 H 0.046 0.954 20 H 0.062 0.938 21 H 0.038 0.962 22 H 0.039 0.961 23 H 0.055 0.945 24 H 0.077 0.923 25 H 0.051 0.949 26 H 0.341 0.659 27 H 0.086 0.914 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.554 10.026 1.084 13.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.119 4.119 3 C 0.018 3.982 4 C -0.218 4.218 5 N -0.293 5.293 6 C -0.080 4.080 7 C -0.173 4.173 8 C -0.015 4.015 9 H 0.042 0.958 10 C -0.546 4.546 11 H 0.083 0.917 12 C -0.186 4.186 13 N -0.596 5.596 14 Si 0.760 3.240 15 H -0.195 1.195 16 H -0.173 1.173 17 H -0.226 1.226 18 H 0.081 0.919 19 H 0.065 0.935 20 H 0.081 0.919 21 H 0.057 0.943 22 H 0.057 0.943 23 H 0.074 0.926 24 H 0.096 0.904 25 H 0.070 0.930 26 H 0.158 0.842 27 H 0.104 0.896 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.305 9.412 0.557 12.565 hybrid contribution 1.213 0.629 0.596 1.491 sum -7.092 10.041 1.153 12.347 Atomic orbital electron populations 1.21794 0.94916 1.01127 1.02067 1.21313 0.95345 0.95419 0.99845 1.21438 0.93585 0.94092 0.89089 1.22389 1.02041 0.99891 0.97490 1.63047 1.05957 1.27068 1.33224 1.22950 0.90616 0.93607 1.00864 1.22864 0.97009 0.97789 0.99588 1.20063 0.93355 0.94534 0.93589 0.95778 1.21801 0.92693 0.93119 1.46991 0.91698 1.25808 1.00212 0.97527 0.95069 1.70049 1.14256 1.21977 1.53321 0.86037 0.77898 0.80950 0.79160 1.19513 1.17322 1.22563 0.91881 0.93476 0.91932 0.94328 0.94270 0.92632 0.90430 0.93010 0.84215 0.89552 0.93109 0.93167 0.93304 0.92987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.30 9.47 71.98 0.68 -3.62 16 2 C -0.08 -3.26 3.67 30.59 0.11 -3.14 16 3 C 0.11 4.10 0.81 3.67 0.00 4.10 16 4 C -0.16 -4.89 8.01 71.98 0.58 -4.31 16 5 N -0.66 -21.90 6.18 -458.81 -2.83 -24.73 16 6 C 0.05 1.57 7.54 86.70 0.65 2.23 16 7 C -0.13 -5.64 4.85 31.85 0.15 -5.48 16 8 C 0.00 0.19 2.07 -10.66 -0.02 0.16 16 9 H 0.02 1.14 6.72 -2.38 -0.02 1.12 16 10 C -0.51 -28.74 8.11 25.60 0.21 -28.53 16 11 H 0.07 3.98 4.94 -2.91 -0.01 3.96 16 12 C 0.01 0.57 5.46 84.66 0.46 1.03 16 13 N -0.95 -60.63 13.96 21.45 0.30 -60.33 16 14 Si 0.93 45.44 24.78 68.60 1.70 47.14 16 15 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 16 H -0.25 -11.25 6.38 99.48 0.64 -10.61 16 17 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 18 H 0.06 1.82 7.55 -2.38 -0.02 1.80 16 19 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 20 H 0.06 1.62 6.54 -2.38 -0.02 1.61 16 21 H 0.04 1.84 6.67 -2.39 -0.02 1.82 16 22 H 0.04 1.70 7.52 -2.39 -0.02 1.68 16 23 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.08 1.94 6.52 -2.38 -0.02 1.92 16 25 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.34 9.02 8.44 -89.69 -0.76 8.27 16 27 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 28 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.05 2.02 6.05 -2.39 -0.01 2.01 16 30 H 0.05 2.29 7.86 -2.39 -0.02 2.27 16 31 H 0.26 15.68 8.31 -92.70 -0.77 14.91 16 Total: -1.00 -64.42 233.36 2.27 -62.14 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 0.28 Total: 13.36 kcal Atomic # 6 Polarization: -40.40 SS G_CDS: 2.83 Total: -37.57 kcal Atomic # 7 Polarization: -82.53 SS G_CDS: -2.53 Total: -85.07 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.70 Total: 47.14 kcal Total: -64.42 2.27 -62.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261109871.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.109 kcal (2) G-P(sol) polarization free energy of solvation -64.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds