Wall clock time and date at job start Mon Mar 30 2020 02:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47464 * 2 1 4 4 C 1.52995 * 109.47133 * 179.97438 * 3 2 1 5 5 H 1.09001 * 110.01405 * 53.88430 * 4 3 2 6 6 N 1.47735 * 110.06923 * 292.69746 * 4 3 2 7 7 C 1.47849 * 108.59401 * 241.81160 * 6 4 3 8 8 C 1.54905 * 104.79870 * 335.74436 * 7 6 4 9 9 C 1.54322 * 109.89084 * 174.99808 * 4 3 2 10 10 H 1.08995 * 110.70213 * 23.13173 * 9 4 3 11 11 C 1.50695 * 110.70421 * 260.07453 * 9 4 3 12 12 H 1.08004 * 120.00546 * 2.67799 * 11 9 4 13 13 C 1.37885 * 119.99721 * 182.40050 * 11 9 4 14 14 N 1.31514 * 120.00035 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99853 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47093 * 60.00328 * 15 13 11 17 17 H 1.48495 * 109.47002 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47239 * 300.00048 * 15 13 11 19 19 H 1.08995 * 109.47563 * 180.02562 * 1 2 3 20 20 H 1.08999 * 109.47152 * 300.00635 * 1 2 3 21 21 H 1.09003 * 109.47064 * 59.99802 * 1 2 3 22 22 H 1.08999 * 109.47152 * 239.99365 * 2 1 3 23 23 H 1.09003 * 109.47064 * 120.00198 * 2 1 3 24 24 H 1.08998 * 109.46931 * 59.99578 * 3 2 1 25 25 H 1.08998 * 109.46530 * 299.99489 * 3 2 1 26 26 H 1.00902 * 110.85772 * 4.00591 * 6 4 3 27 27 H 1.09005 * 110.37182 * 216.91500 * 7 6 4 28 28 H 1.09004 * 110.37456 * 94.57914 * 7 6 4 29 29 H 1.08995 * 110.99354 * 278.98084 * 8 7 6 30 30 H 1.09004 * 110.98723 * 155.16399 * 8 7 6 31 31 H 0.97000 * 119.99706 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9434 0.8386 -0.8265 6 7 4.0764 0.9071 1.2811 7 6 4.8597 1.9634 1.9568 8 6 5.3284 2.8999 0.8154 9 6 4.0952 2.8880 -0.1259 10 1 3.3445 3.6017 0.2133 11 6 4.5056 3.1834 -1.5455 12 1 4.3684 2.4369 -2.3138 13 6 5.0509 4.4090 -1.8646 14 7 5.2133 5.3199 -0.9300 15 14 5.5602 4.7750 -3.6242 16 1 4.3770 4.6660 -4.5148 17 1 6.1147 6.1502 -3.7030 18 1 6.5944 3.7994 -4.0532 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 1.8933 -0.5139 -0.8899 23 1 1.8933 -0.5139 0.8900 24 1 1.6767 1.9563 0.8899 25 1 1.6768 1.9562 -0.8900 26 1 3.3160 0.5917 1.8645 27 1 5.7188 1.5299 2.4689 28 1 4.2323 2.5089 2.6618 29 1 6.2067 2.4943 0.3133 30 1 5.5238 3.9046 1.1901 31 1 5.5973 6.1819 -1.1544 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261112287.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:25 Heat of formation + Delta-G solvation = -26.203984 kcal Electronic energy + Delta-G solvation = -11456.098281 eV Core-core repulsion = 9543.150214 eV Total energy + Delta-G solvation = -1912.948067 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -37.99790 -34.02694 -32.60633 -29.16234 -28.89130 -25.41413 -23.59819 -21.21057 -19.57065 -19.16287 -16.44562 -15.42505 -14.75543 -14.43224 -13.74631 -13.33726 -12.41579 -12.19816 -12.11079 -11.99086 -11.32800 -10.98023 -10.90627 -10.77979 -10.66203 -10.55244 -10.26334 -9.96345 -9.57939 -9.03350 -8.82978 -8.36085 -7.57418 -5.99906 -4.02104 3.33453 3.37846 3.40745 4.45402 5.14203 5.31023 5.35105 5.37356 5.51869 5.92945 5.94867 6.13419 6.16155 6.18447 6.22445 6.38398 6.49378 6.53292 6.73456 6.81205 6.97106 7.25271 7.28985 7.65220 7.67182 7.93873 8.02942 8.21752 8.46172 8.99210 9.61513 11.10043 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.040583 B = 0.012567 C = 0.010326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.783223 B = 2227.568836 C = 2710.924463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.128 4.128 4 C 0.076 3.924 5 H 0.074 0.926 6 N -0.684 5.684 7 C 0.037 3.963 8 C -0.105 4.105 9 C 0.039 3.961 10 H 0.029 0.971 11 C -0.509 4.509 12 H 0.056 0.944 13 C 0.062 3.938 14 N -0.891 5.891 15 Si 0.891 3.109 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.277 1.277 19 H 0.047 0.953 20 H 0.049 0.951 21 H 0.052 0.948 22 H 0.059 0.941 23 H 0.059 0.941 24 H 0.050 0.950 25 H 0.069 0.931 26 H 0.319 0.681 27 H 0.058 0.942 28 H 0.025 0.975 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.010 -6.306 2.876 8.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.166 4.166 4 C -0.033 4.033 5 H 0.092 0.908 6 N -0.313 5.313 7 C -0.092 4.092 8 C -0.143 4.143 9 C 0.020 3.980 10 H 0.047 0.953 11 C -0.548 4.548 12 H 0.074 0.926 13 C -0.140 4.140 14 N -0.530 5.530 15 Si 0.719 3.281 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.202 1.202 19 H 0.066 0.934 20 H 0.068 0.932 21 H 0.071 0.929 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.068 0.932 25 H 0.088 0.912 26 H 0.135 0.865 27 H 0.076 0.924 28 H 0.043 0.957 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.375 -6.462 2.627 8.234 hybrid contribution -0.409 0.951 -0.612 1.203 sum -4.784 -5.511 2.014 7.571 Atomic orbital electron populations 1.21789 0.96768 1.00752 1.01518 1.21552 0.94784 0.97868 1.01818 1.22063 0.97192 0.95481 1.01902 1.22551 0.91295 0.98193 0.91231 0.90769 1.62258 1.26327 1.36877 1.05850 1.22929 0.96564 0.92595 0.97103 1.22605 0.99892 0.97365 0.94456 1.19854 0.93035 0.89603 0.95508 0.95277 1.21052 1.40983 0.99306 0.93412 0.92600 1.24978 0.95741 0.96239 0.97010 1.69953 1.44788 1.05786 1.32457 0.86682 0.78939 0.77256 0.85271 1.20313 1.21379 1.20249 0.93405 0.93198 0.92916 0.92177 0.92269 0.93170 0.91229 0.86525 0.92404 0.95669 0.92661 0.91305 0.93054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 37.16 0.37 -1.55 16 2 C -0.12 -1.83 5.81 -26.73 -0.16 -1.98 16 3 C -0.13 -2.31 4.42 -26.73 -0.12 -2.43 16 4 C 0.08 1.61 3.06 -66.56 -0.20 1.41 16 5 H 0.07 1.69 7.65 -51.93 -0.40 1.29 16 6 N -0.68 -13.32 7.28 -103.60 -0.75 -14.07 16 7 C 0.04 0.75 7.57 -2.30 -0.02 0.73 16 8 C -0.10 -2.52 5.84 -24.60 -0.14 -2.66 16 9 C 0.04 0.99 2.34 -89.95 -0.21 0.78 16 10 H 0.03 0.80 7.85 -51.93 -0.41 0.39 16 11 C -0.51 -14.07 8.48 -34.44 -0.29 -14.37 16 12 H 0.06 1.53 7.55 -52.48 -0.40 1.13 16 13 C 0.06 1.73 5.35 -17.82 -0.10 1.63 16 14 N -0.89 -25.79 12.28 55.43 0.68 -25.11 16 15 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 20 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 21 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 22 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 23 H 0.06 0.85 7.07 -51.93 -0.37 0.48 16 24 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 26 H 0.32 5.47 7.15 -39.29 -0.28 5.19 16 27 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 1.40 8.04 -51.93 -0.42 0.98 16 30 H 0.07 1.76 7.64 -51.93 -0.40 1.36 16 31 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 249.60 15.07 3.76 3.76 Total: -1.00 -28.15 249.60 -7.38 -35.54 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -5.18 Total: 1.86 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: -0.87 Total: -18.44 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: -0.07 Total: -39.19 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -28.15 -7.38 -35.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261112287.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.331 kcal (2) G-P(sol) polarization free energy of solvation -28.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds