Wall clock time and date at job start Mon Mar 30 2020 02:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47464 * 2 1 4 4 C 1.52995 * 109.47133 * 179.97438 * 3 2 1 5 5 H 1.09001 * 110.01405 * 53.88430 * 4 3 2 6 6 N 1.47735 * 110.06923 * 292.69746 * 4 3 2 7 7 C 1.47849 * 108.59401 * 241.81160 * 6 4 3 8 8 C 1.54905 * 104.79870 * 335.74436 * 7 6 4 9 9 C 1.54322 * 109.89084 * 174.99808 * 4 3 2 10 10 H 1.08995 * 110.70213 * 23.13173 * 9 4 3 11 11 C 1.50695 * 110.70421 * 260.07453 * 9 4 3 12 12 H 1.08004 * 120.00546 * 2.67799 * 11 9 4 13 13 C 1.37885 * 119.99721 * 182.40050 * 11 9 4 14 14 N 1.31514 * 120.00035 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99853 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47093 * 60.00328 * 15 13 11 17 17 H 1.48495 * 109.47002 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47239 * 300.00048 * 15 13 11 19 19 H 1.08995 * 109.47563 * 180.02562 * 1 2 3 20 20 H 1.08999 * 109.47152 * 300.00635 * 1 2 3 21 21 H 1.09003 * 109.47064 * 59.99802 * 1 2 3 22 22 H 1.08999 * 109.47152 * 239.99365 * 2 1 3 23 23 H 1.09003 * 109.47064 * 120.00198 * 2 1 3 24 24 H 1.08998 * 109.46931 * 59.99578 * 3 2 1 25 25 H 1.08998 * 109.46530 * 299.99489 * 3 2 1 26 26 H 1.00902 * 110.85772 * 4.00591 * 6 4 3 27 27 H 1.09005 * 110.37182 * 216.91500 * 7 6 4 28 28 H 1.09004 * 110.37456 * 94.57914 * 7 6 4 29 29 H 1.08995 * 110.99354 * 278.98084 * 8 7 6 30 30 H 1.09004 * 110.98723 * 155.16399 * 8 7 6 31 31 H 0.97000 * 119.99706 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9434 0.8386 -0.8265 6 7 4.0764 0.9071 1.2811 7 6 4.8597 1.9634 1.9568 8 6 5.3284 2.8999 0.8154 9 6 4.0952 2.8880 -0.1259 10 1 3.3445 3.6017 0.2133 11 6 4.5056 3.1834 -1.5455 12 1 4.3684 2.4369 -2.3138 13 6 5.0509 4.4090 -1.8646 14 7 5.2133 5.3199 -0.9300 15 14 5.5602 4.7750 -3.6242 16 1 4.3770 4.6660 -4.5148 17 1 6.1147 6.1502 -3.7030 18 1 6.5944 3.7994 -4.0532 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 1.8933 -0.5139 -0.8899 23 1 1.8933 -0.5139 0.8900 24 1 1.6767 1.9563 0.8899 25 1 1.6768 1.9562 -0.8900 26 1 3.3160 0.5917 1.8645 27 1 5.7188 1.5299 2.4689 28 1 4.2323 2.5089 2.6618 29 1 6.2067 2.4943 0.3133 30 1 5.5238 3.9046 1.1901 31 1 5.5973 6.1819 -1.1544 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261112287.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:25 Heat of formation + Delta-G solvation = -44.129191 kcal Electronic energy + Delta-G solvation = -11456.875576 eV Core-core repulsion = 9543.150214 eV Total energy + Delta-G solvation = -1913.725362 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.72084 -35.47039 -34.59479 -30.98308 -30.51289 -27.18829 -25.34290 -22.60983 -21.33513 -20.93707 -18.53395 -17.04190 -16.56486 -16.10101 -15.39820 -14.70619 -14.16262 -13.91509 -13.58042 -13.50540 -13.02521 -12.80199 -12.65269 -12.53378 -12.38356 -11.98973 -11.92447 -11.56054 -11.37260 -10.92413 -10.78101 -10.47980 -9.20296 -8.14479 -6.23664 1.40063 1.41634 1.49137 2.41975 3.16593 3.52346 4.03275 4.15109 4.17133 4.38315 4.44527 4.57366 4.71325 4.81825 4.91815 4.96955 5.02364 5.09940 5.24916 5.34525 5.36213 5.45673 5.54919 5.61225 5.71918 5.90210 6.15195 6.35936 6.72666 6.84827 7.43445 8.94658 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.040583 B = 0.012567 C = 0.010326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.783223 B = 2227.568836 C = 2710.924463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.120 4.120 4 C 0.085 3.915 5 H 0.058 0.942 6 N -0.678 5.678 7 C 0.048 3.952 8 C -0.102 4.102 9 C 0.031 3.969 10 H 0.001 0.999 11 C -0.528 4.528 12 H 0.052 0.948 13 C 0.012 3.988 14 N -0.920 5.920 15 Si 0.954 3.046 16 H -0.270 1.270 17 H -0.284 1.284 18 H -0.272 1.272 19 H 0.068 0.932 20 H 0.055 0.945 21 H 0.048 0.952 22 H 0.056 0.944 23 H 0.070 0.930 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.338 0.662 27 H 0.079 0.921 28 H 0.039 0.961 29 H 0.035 0.965 30 H 0.045 0.955 31 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.638 -7.519 3.027 9.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C -0.159 4.159 4 C -0.024 4.024 5 H 0.076 0.924 6 N -0.309 5.309 7 C -0.081 4.081 8 C -0.141 4.141 9 C 0.011 3.989 10 H 0.019 0.981 11 C -0.567 4.567 12 H 0.070 0.930 13 C -0.187 4.187 14 N -0.559 5.559 15 Si 0.779 3.221 16 H -0.195 1.195 17 H -0.209 1.209 18 H -0.197 1.197 19 H 0.087 0.913 20 H 0.074 0.926 21 H 0.067 0.933 22 H 0.075 0.925 23 H 0.089 0.911 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.155 0.845 27 H 0.098 0.902 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.017 -7.692 2.785 9.597 hybrid contribution -0.206 1.342 -0.639 1.501 sum -5.223 -6.350 2.146 8.497 Atomic orbital electron populations 1.21756 0.94828 1.02188 1.01709 1.21486 0.96439 0.95199 1.02204 1.21960 0.94824 0.97877 1.01259 1.22293 0.93340 0.95084 0.91693 0.92439 1.62182 1.27026 1.36238 1.05452 1.22838 0.97575 0.91973 0.95722 1.22428 0.98784 0.97098 0.95799 1.19842 0.92896 0.91536 0.94591 0.98115 1.21402 1.41046 0.99506 0.94697 0.92983 1.25763 0.95781 0.96123 1.01023 1.70076 1.45458 1.06064 1.34320 0.85677 0.78763 0.77132 0.80511 1.19491 1.20938 1.19714 0.91348 0.92551 0.93266 0.92540 0.91122 0.92777 0.92967 0.84463 0.90228 0.94265 0.94643 0.93611 0.93075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 9.91 71.98 0.71 -2.63 16 2 C -0.12 -3.18 5.81 30.59 0.18 -3.01 16 3 C -0.12 -4.25 4.42 30.59 0.14 -4.11 16 4 C 0.09 3.57 3.06 45.20 0.14 3.71 16 5 H 0.06 2.61 7.65 -2.39 -0.02 2.59 16 6 N -0.68 -25.10 7.28 -481.70 -3.51 -28.61 16 7 C 0.05 1.85 7.57 86.77 0.66 2.50 16 8 C -0.10 -5.01 5.84 31.98 0.19 -4.82 16 9 C 0.03 1.57 2.34 -10.36 -0.02 1.55 16 10 H 0.00 0.04 7.85 -2.39 -0.02 0.02 16 11 C -0.53 -29.78 8.48 25.60 0.22 -29.56 16 12 H 0.05 2.89 7.55 -2.91 -0.02 2.87 16 13 C 0.01 0.67 5.35 84.66 0.45 1.12 16 14 N -0.92 -54.32 12.28 21.45 0.26 -54.06 16 15 Si 0.95 44.39 29.54 68.60 2.03 46.42 16 16 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 17 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 18 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 19 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 20 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 21 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 22 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.07 1.79 7.07 -2.39 -0.02 1.77 16 24 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.34 10.55 7.15 -89.69 -0.64 9.91 16 27 H 0.08 2.76 8.14 -2.38 -0.02 2.74 16 28 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.03 1.82 8.04 -2.39 -0.02 1.80 16 30 H 0.05 2.40 7.64 -2.38 -0.02 2.38 16 31 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -60.35 249.60 1.88 -58.47 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 0.44 Total: 13.02 kcal Atomic # 6 Polarization: -37.89 SS G_CDS: 2.65 Total: -35.24 kcal Atomic # 7 Polarization: -79.42 SS G_CDS: -3.24 Total: -82.67 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -60.35 1.88 -58.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261112287.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.340 kcal (2) G-P(sol) polarization free energy of solvation -60.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds